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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OIUM] human gut metagenome; human gut
HIT:
122 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182502979
OIUM01010038
[OIUM] human gut metagenome; human gut
8
84
+
Cys
GCA
[ENA]
¢þ
>WENV182502963
OIUM01007469
[OIUM] human gut metagenome; human gut
26
117
+
Ser
CGA
[ENA]
¢þ
>WENV182502938
OIUM01003519
[OIUM] human gut metagenome; human gut
55
129
+
Arg
TCT
[ENA]
¢þ
>WENV182502970
OIUM01008100
[OIUM] human gut metagenome; human gut
60
130
+
Gly
TCC
[ENA]
¢þ
>WENV182502980
OIUM01010038
[OIUM] human gut metagenome; human gut
88
164
+
Glu
CTC
[ENA]
¢þ
>WENV182502959
OIUM01006567
[OIUM] human gut metagenome; human gut
116
207
+
Ser
GGA
[ENA]
¢þ
>WENV182502922
OIUM01002226
[OIUM] human gut metagenome; human gut
132
60
-
Glu
TTC
[ENA]
¢þ
>WENV182502971
OIUM01008100
[OIUM] human gut metagenome; human gut
152
226
+
Arg
TCT
[ENA]
¢þ
>WENV182502944
OIUM01005282
[OIUM] human gut metagenome; human gut
183
112
-
Glu
TTC
[ENA]
¢þ
>WENV182502939
OIUM01003939
[OIUM] human gut metagenome; human gut
221
296
+
Ala
TGC
[ENA]
¢þ
>WENV182502931
OIUM01002726
[OIUM] human gut metagenome; human gut
229
143
-
Leu
TAA
[ENA]
¢þ
>WENV182502972
OIUM01008100
[OIUM] human gut metagenome; human gut
231
305
+
His
GTG
[ENA]
¢þ
>WENV182502981
OIUM01010038
[OIUM] human gut metagenome; human gut
255
330
+
Gln
CTG
[ENA]
¢þ
>WENV182502975
OIUM01008787
[OIUM] human gut metagenome; human gut
270
342
+
Gln
CTG
[ENA]
¢þ
>WENV182502967
OIUM01008081
[OIUM] human gut metagenome; human gut
270
346
+
Ile
GAT
[ENA]
¢þ
>WENV182502954
OIUM01005862
[OIUM] human gut metagenome; human gut
312
386
+
Thr
TGT
[ENA]
¢þ
>WENV182502973
OIUM01008100
[OIUM] human gut metagenome; human gut
313
387
+
Gln
TTG
[ENA]
¢þ
>WENV182502940
OIUM01003939
[OIUM] human gut metagenome; human gut
321
397
+
Ile
GAT
[ENA]
¢þ
>WENV182502934
OIUM01003179
[OIUM] human gut metagenome; human gut
336
255
-
Leu
TAG
[ENA]
¢þ
>WENV182502961
OIUM01007390
[OIUM] human gut metagenome; human gut
341
414
+
Ala
TGC
[ENA]
¢þ
>WENV182502943
OIUM01005282
[OIUM] human gut metagenome; human gut
351
275
-
Met
CAT
[ENA]
¢þ
>WENV182502890
OIUM01000534
[OIUM] human gut metagenome; human gut
355
281
-
Ala
GGC
[ENA]
¢þ
>WENV182502930
OIUM01002526
[OIUM] human gut metagenome; human gut
361
435
+
Ala
GGC
[ENA]
¢þ
>WENV182502897
OIUM01000873
[OIUM] human gut metagenome; human gut
377
304
-
Lys
TTT
[ENA]
¢þ
>WENV182502895
OIUM01000848
[OIUM] human gut metagenome; human gut
379
466
+
Ser
TGA
[ENA]
¢þ
>WENV182502978
OIUM01009038
[OIUM] human gut metagenome; human gut
383
300
-
Leu
TAG
[ENA]
¢þ
>WENV182502968
OIUM01008081
[OIUM] human gut metagenome; human gut
399
473
+
Ala
TGC
[ENA]
¢þ
>WENV182502976
OIUM01008832
[OIUM] human gut metagenome; human gut
407
481
+
Cys
GCA
[ENA]
¢þ
>WENV182502910
OIUM01001683
[OIUM] human gut metagenome; human gut
408
484
+
Arg
CCG
[ENA]
¢þ
>WENV182502952
OIUM01005754
[OIUM] human gut metagenome; human gut
411
323
-
Leu
TAA
[ENA]
¢þ
>WENV182502941
OIUM01004378
[OIUM] human gut metagenome; human gut
418
491
+
Gln
CTG
[ENA]
¢þ
>WENV182502962
OIUM01007390
[OIUM] human gut metagenome; human gut
437
511
+
Ile
GAT
[ENA]
¢þ
>WENV182502966
OIUM01007778
[OIUM] human gut metagenome; human gut
460
385
-
Ile2
CAT
[ENA]
¢þ
>WENV182502974
OIUM01008100
[OIUM] human gut metagenome; human gut
472
554
+
Leu
TAG
[ENA]
¢þ
>WENV182502965
OIUM01007595
[OIUM] human gut metagenome; human gut
487
396
-
Ser
GGA
[ENA]
¢þ
>WENV182502896
OIUM01000848
[OIUM] human gut metagenome; human gut
499
592
+
Ser
GCT
[ENA]
¢þ
>WENV182502951
OIUM01005754
[OIUM] human gut metagenome; human gut
504
430
-
Val
TAC
[ENA]
¢þ
>WENV182502977
OIUM01008832
[OIUM] human gut metagenome; human gut
505
578
+
Glu
TTC
[ENA]
¢þ
>WENV182502942
OIUM01004378
[OIUM] human gut metagenome; human gut
526
599
+
Pro
CGG
[ENA]
¢þ
>WENV182502969
OIUM01008081
[OIUM] human gut metagenome; human gut
532
608
+
Ile
GAT
[ENA]
¢þ
>WENV182502957
OIUM01006545
[OIUM] human gut metagenome; human gut
559
634
+
Arg
TCT
[ENA]
¢þ
>WENV182502956
OIUM01006117
[OIUM] human gut metagenome; human gut
563
478
-
Tyr
GTA
[ENA]
¢þ
>WENV182502928
OIUM01002426
[OIUM] human gut metagenome; human gut
589
518
-
Cys
GCA
[ENA]
¢þ
>WENV182502935
OIUM01003289
[OIUM] human gut metagenome; human gut
590
673
+
Leu
TAA
[ENA]
¢þ
>WENV182502960
OIUM01007353
[OIUM] human gut metagenome; human gut
596
522
-
Arg
CCG
[ENA]
¢þ
>WENV182502950
OIUM01005754
[OIUM] human gut metagenome; human gut
609
534
-
Asp
GTC
[ENA]
¢þ
>WENV182502964
OIUM01007595
[OIUM] human gut metagenome; human gut
620
534
-
Ser
TGA
[ENA]
¢þ
>WENV182502861
OIUM01000002
[OIUM] human gut metagenome; human gut
634
708
+
Asn
GTT
[ENA]
¢þ
>WENV182502946
OIUM01005659
[OIUM] human gut metagenome; human gut
641
717
+
Asp
GTC
[ENA]
¢þ
>WENV182502958
OIUM01006545
[OIUM] human gut metagenome; human gut
642
718
+
His
GTG
[ENA]
¢þ
>WENV182502953
OIUM01005833
[OIUM] human gut metagenome; human gut
657
729
+
Arg
CCT
[ENA]
¢þ
>WENV182502888
OIUM01000473
[OIUM] human gut metagenome; human gut
672
745
+
Gly
CCC
[ENA]
¢þ
>WENV182502949
OIUM01005754
[OIUM] human gut metagenome; human gut
698
623
-
Ile2
CAT
[ENA]
¢þ
>WENV182502920
OIUM01002095
[OIUM] human gut metagenome; human gut
717
643
-
Ala
TGC
[ENA]
¢þ
>WENV182502927
OIUM01002426
[OIUM] human gut metagenome; human gut
744
672
-
Asn
GTT
[ENA]
¢þ
>WENV182502937
OIUM01003504
[OIUM] human gut metagenome; human gut
744
818
+
Ile
GAT
[ENA]
¢þ
>WENV182502948
OIUM01005754
[OIUM] human gut metagenome; human gut
774
702
-
Thr
TGT
[ENA]
¢þ
>WENV182502955
OIUM01005962
[OIUM] human gut metagenome; human gut
799
874
+
Ala
GGC
[ENA]
¢þ
>WENV182502919
OIUM01002095
[OIUM] human gut metagenome; human gut
822
746
-
Ile
GAT
[ENA]
¢þ
>WENV182502947
OIUM01005754
[OIUM] human gut metagenome; human gut
864
790
-
Val
TAC
[ENA]
¢þ
>WENV182502904
OIUM01001155
[OIUM] human gut metagenome; human gut
875
804
-
Gln
CTG
[ENA]
¢þ
>WENV182502945
OIUM01005637
[OIUM] human gut metagenome; human gut
919
844
-
Gly
CCC
[ENA]
¢þ
>WENV182502933
OIUM01003086
[OIUM] human gut metagenome; human gut
944
1017
+
Phe
GAA
[ENA]
¢þ
>WENV182502923
OIUM01002229
[OIUM] human gut metagenome; human gut
959
874
-
Ser
TGA
[ENA]
¢þ
>WENV182502926
OIUM01002426
[OIUM] human gut metagenome; human gut
1029
957
-
Glu
TTC
[ENA]
¢þ
>WENV182502932
OIUM01002893
[OIUM] human gut metagenome; human gut
1198
1284
+
Leu
CAG
[ENA]
¢þ
>WENV182502899
OIUM01000934
[OIUM] human gut metagenome; human gut
1216
1290
+
Thr
TGT
[ENA]
¢þ
>WENV182502883
OIUM01000307
[OIUM] human gut metagenome; human gut
1217
1144
-
Lys
CTT
[ENA]
¢þ
>WENV182502900
OIUM01000962
[OIUM] human gut metagenome; human gut
1235
1159
-
Val
CAC
[ENA]
¢þ
>WENV182502916
OIUM01001863
[OIUM] human gut metagenome; human gut
1350
1276
-
Gly
TCC
[ENA]
¢þ
>WENV182502936
OIUM01003454
[OIUM] human gut metagenome; human gut
1573
1645
+
Thr
CGT
[ENA]
¢þ
>WENV182502929
OIUM01002431
[OIUM] human gut metagenome; human gut
1600
1529
-
Gln
TTG
[ENA]
¢þ
>WENV182502925
OIUM01002373
[OIUM] human gut metagenome; human gut
1608
1683
+
Pro
TGG
[ENA]
¢þ
>WENV182502914
OIUM01001755
[OIUM] human gut metagenome; human gut
1657
1584
-
Pro
CGG
[ENA]
¢þ
>WENV182502913
OIUM01001755
[OIUM] human gut metagenome; human gut
1740
1667
-
Phe
GAA
[ENA]
¢þ
>WENV182502907
OIUM01001258
[OIUM] human gut metagenome; human gut
1803
1877
+
Arg
TCT
[ENA]
¢þ
>WENV182502909
OIUM01001610
[OIUM] human gut metagenome; human gut
1829
1901
+
Cys
GCA
[ENA]
¢þ
>WENV182502865
OIUM01000031
[OIUM] human gut metagenome; human gut
1875
1793
-
Leu
TAG
[ENA]
¢þ
>WENV182502915
OIUM01001843
[OIUM] human gut metagenome; human gut
2001
2074
+
Phe
GAA
[ENA]
¢þ
>WENV182502921
OIUM01002222
[OIUM] human gut metagenome; human gut
2025
1952
-
Trp
CCA
[ENA]
¢þ
>WENV182502905
OIUM01001193
[OIUM] human gut metagenome; human gut
2049
1975
-
Arg
TCT
[ENA]
¢þ
>WENV182502917
OIUM01001923
[OIUM] human gut metagenome; human gut
2059
2142
+
Leu
GAG
[ENA]
¢þ
>WENV182502908
OIUM01001535
[OIUM] human gut metagenome; human gut
2074
2159
+
Tyr
GTA
[ENA]
¢þ
>WENV182502924
OIUM01002370
[OIUM] human gut metagenome; human gut
2152
2075
-
Pro
AGG
[ENA]
¢þ
>WENV182502918
OIUM01002011
[OIUM] human gut metagenome; human gut
2505
2592
+
Ser
CGA
[ENA]
¢þ
>WENV182502893
OIUM01000756
[OIUM] human gut metagenome; human gut
2527
2454
-
fMet
CAT
[ENA]
¢þ
>WENV182502911
OIUM01001687
[OIUM] human gut metagenome; human gut
2604
2678
+
Met
CAT
[ENA]
¢þ
>WENV182502902
OIUM01001061
[OIUM] human gut metagenome; human gut
2675
2758
+
Tyr
GTA
[ENA]
¢þ
>WENV182502912
OIUM01001734
[OIUM] human gut metagenome; human gut
2716
2790
+
Asp
GTC
[ENA]
¢þ
>WENV182502894
OIUM01000770
[OIUM] human gut metagenome; human gut
2852
2781
-
Gln
TTG
[ENA]
¢þ
>WENV182502898
OIUM01000906
[OIUM] human gut metagenome; human gut
2858
2774
-
Leu
CAA
[ENA]
¢þ
>WENV182502903
OIUM01001061
[OIUM] human gut metagenome; human gut
2872
2944
+
Thr
GGT
[ENA]
¢þ
>WENV182502891
OIUM01000556
[OIUM] human gut metagenome; human gut
2912
2987
+
Gly
GCC
[ENA]
¢þ
>WENV182502892
OIUM01000556
[OIUM] human gut metagenome; human gut
3017
3091
+
Cys
GCA
[ENA]
¢þ
>WENV182502874
OIUM01000137
[OIUM] human gut metagenome; human gut
3086
3012
-
Thr
TGT
[ENA]
¢þ
>WENV182502901
OIUM01001024
[OIUM] human gut metagenome; human gut
3158
3237
+
Leu
CAA
[ENA]
¢þ
>WENV182502877
OIUM01000185
[OIUM] human gut metagenome; human gut
3357
3282
-
Val
TAC
[ENA]
¢þ
>WENV182502906
OIUM01001197
[OIUM] human gut metagenome; human gut
3492
3565
+
Lys
CTT
[ENA]
¢þ
>WENV182502873
OIUM01000107
[OIUM] human gut metagenome; human gut
3797
3882
+
Ser
TGA
[ENA]
¢þ
>WENV182502889
OIUM01000498
[OIUM] human gut metagenome; human gut
4024
3941
-
Tyr
GTA
[ENA]
¢þ
>WENV182502870
OIUM01000070
[OIUM] human gut metagenome; human gut
4163
4089
-
Ala
GGC
[ENA]
¢þ
>WENV182502878
OIUM01000233
[OIUM] human gut metagenome; human gut
4236
4311
+
Val
TAC
[ENA]
¢þ
>WENV182502884
OIUM01000333
[OIUM] human gut metagenome; human gut
4441
4523
+
Leu
TAG
[ENA]
¢þ
>WENV182502881
OIUM01000257
[OIUM] human gut metagenome; human gut
5337
5262
-
Val
GAC
[ENA]
¢þ
>WENV182502860
OIUM01000001
[OIUM] human gut metagenome; human gut
5713
5785
+
Arg
CCT
[ENA]
¢þ
>WENV182502886
OIUM01000392
[OIUM] human gut metagenome; human gut
5721
5809
+
Ser
GGA
[ENA]
¢þ
>WENV182502887
OIUM01000448
[OIUM] human gut metagenome; human gut
5929
6004
+
Ile2
CAT
[ENA]
¢þ
>WENV182502885
OIUM01000358
[OIUM] human gut metagenome; human gut
6389
6315
-
Pro
GGG
[ENA]
¢þ
>WENV182502882
OIUM01000263
[OIUM] human gut metagenome; human gut
6536
6611
+
Pro
GGG
[ENA]
¢þ
>WENV182502880
OIUM01000253
[OIUM] human gut metagenome; human gut
7429
7355
-
Asp
GTC
[ENA]
¢þ
>WENV182502879
OIUM01000240
[OIUM] human gut metagenome; human gut
7549
7475
-
Ile2
CAT
[ENA]
¢þ
>WENV182502867
OIUM01000049
[OIUM] human gut metagenome; human gut
8565
8639
+
His
GTG
[ENA]
¢þ
>WENV182502871
OIUM01000086
[OIUM] human gut metagenome; human gut
8747
8674
-
Lys
TTT
[ENA]
¢þ
>WENV182502875
OIUM01000151
[OIUM] human gut metagenome; human gut
9431
9502
+
Gln
CTG
[ENA]
¢þ
>WENV182502876
OIUM01000175
[OIUM] human gut metagenome; human gut
9620
9532
-
Ser
GGA
[ENA]
¢þ
>WENV182502869
OIUM01000068
[OIUM] human gut metagenome; human gut
10843
10759
-
Leu
TAA
[ENA]
¢þ
>WENV182502868
OIUM01000068
[OIUM] human gut metagenome; human gut
10930
10857
-
Gly
GCC
[ENA]
¢þ
>WENV182502872
OIUM01000098
[OIUM] human gut metagenome; human gut
12676
12749
+
Thr
CGT
[ENA]
¢þ
>WENV182502866
OIUM01000033
[OIUM] human gut metagenome; human gut
12948
12875
-
Trp
CCA
[ENA]
¢þ
>WENV182502864
OIUM01000015
[OIUM] human gut metagenome; human gut
21815
21742
-
Lys
TTT
[ENA]
¢þ
>WENV182502862
OIUM01000006
[OIUM] human gut metagenome; human gut
35898
35969
+
Gln
TTG
[ENA]
¢þ
>WENV182502863
OIUM01000007
[OIUM] human gut metagenome; human gut
38156
38229
+
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK