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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OIUT] human gut metagenome; human gut
HIT:
157 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182504317
OIUT01008783
[OIUT] human gut metagenome; human gut
46
121
+
Val
GAC
[ENA]
¢þ
>WENV182504308
OIUT01006368
[OIUT] human gut metagenome; human gut
61
132
+
Gln
CTG
[ENA]
¢þ
>WENV182504255
OIUT01000801
[OIUT] human gut metagenome; human gut
63
137
+
Ala
GGC
[ENA]
¢þ
>WENV182504271
OIUT01001901
[OIUT] human gut metagenome; human gut
66
140
+
Ala
TGC
[ENA]
¢þ
>WENV182504322
OIUT01011533
[OIUT] human gut metagenome; human gut
70
146
+
Met
CAT
[ENA]
¢þ
>WENV182504272
OIUT01002008
[OIUT] human gut metagenome; human gut
73
157
+
Tyr
GTA
[ENA]
¢þ
>WENV182504227
OIUT01000316
[OIUT] human gut metagenome; human gut
77
2
-
His
GTG
[ENA]
¢þ
>WENV182504295
OIUT01004970
[OIUT] human gut metagenome; human gut
78
166
+
Leu
TAA
[ENA]
¢þ
>WENV182504324
OIUT01012720
[OIUT] human gut metagenome; human gut
131
56
-
Gly
GCC
[ENA]
¢þ
>WENV182504288
OIUT01003749
[OIUT] human gut metagenome; human gut
145
219
+
Ala
TGC
[ENA]
¢þ
>WENV182504296
OIUT01004970
[OIUT] human gut metagenome; human gut
174
250
+
fMet
CAT
[ENA]
¢þ
>WENV182504319
OIUT01009679
[OIUT] human gut metagenome; human gut
190
116
-
Thr
GGT
[ENA]
¢þ
>WENV182504294
OIUT01004504
[OIUT] human gut metagenome; human gut
194
270
+
His
GTG
[ENA]
¢þ
>WENV182504309
OIUT01006580
[OIUT] human gut metagenome; human gut
211
287
+
Ile2
CAT
[ENA]
¢þ
>WENV182504289
OIUT01003814
[OIUT] human gut metagenome; human gut
213
141
-
Gly
GCC
[ENA]
¢þ
>WENV182504306
OIUT01005555
[OIUT] human gut metagenome; human gut
243
316
+
Gly
CCC
[ENA]
¢þ
>WENV182504297
OIUT01004970
[OIUT] human gut metagenome; human gut
268
343
+
Gly
TCC
[ENA]
¢þ
>WENV182504325
OIUT01013386
[OIUT] human gut metagenome; human gut
289
362
+
Lys
CTT
[ENA]
¢þ
>WENV182504313
OIUT01007504
[OIUT] human gut metagenome; human gut
327
253
-
Lys
CTT
[ENA]
¢þ
>WENV182504287
OIUT01003595
[OIUT] human gut metagenome; human gut
334
408
+
Gln
TTG
[ENA]
¢þ
>WENV182504293
OIUT01004155
[OIUT] human gut metagenome; human gut
346
273
-
Ala
TGC
[ENA]
¢þ
>WENV182504279
OIUT01003130
[OIUT] human gut metagenome; human gut
349
259
-
Ser
GGA
[ENA]
¢þ
>WENV182504298
OIUT01004970
[OIUT] human gut metagenome; human gut
350
426
+
Arg
TCT
[ENA]
¢þ
>WENV182504318
OIUT01009679
[OIUT] human gut metagenome; human gut
380
295
-
Tyr
GTA
[ENA]
¢þ
>WENV182504268
OIUT01001645
[OIUT] human gut metagenome; human gut
395
320
-
Arg
CCT
[ENA]
¢þ
>WENV182504299
OIUT01004970
[OIUT] human gut metagenome; human gut
436
512
+
Ile2
CAT
[ENA]
¢þ
>WENV182504292
OIUT01004155
[OIUT] human gut metagenome; human gut
444
370
-
Ile
GAT
[ENA]
¢þ
>WENV182504305
OIUT01005450
[OIUT] human gut metagenome; human gut
449
523
+
Gly
TCC
[ENA]
¢þ
>WENV182504323
OIUT01011748
[OIUT] human gut metagenome; human gut
460
387
-
Ile2
CAT
[ENA]
¢þ
>WENV182504320
OIUT01010227
[OIUT] human gut metagenome; human gut
480
406
-
Val
CAC
[ENA]
¢þ
>WENV182504281
OIUT01003351
[OIUT] human gut metagenome; human gut
504
417
-
Leu
TAA
[ENA]
¢þ
>WENV182504300
OIUT01004970
[OIUT] human gut metagenome; human gut
515
589
+
Glu
TTC
[ENA]
¢þ
>WENV182504256
OIUT01000837
[OIUT] human gut metagenome; human gut
532
606
+
Ala
TGC
[ENA]
¢þ
>WENV182504321
OIUT01010704
[OIUT] human gut metagenome; human gut
542
467
-
Asn
GTT
[ENA]
¢þ
>WENV182504247
OIUT01000645
[OIUT] human gut metagenome; human gut
573
502
-
Gln
TTG
[ENA]
¢þ
>WENV182504312
OIUT01007396
[OIUT] human gut metagenome; human gut
603
520
-
Leu
TAG
[ENA]
¢þ
>WENV182504316
OIUT01007895
[OIUT] human gut metagenome; human gut
613
687
+
Asn
GTT
[ENA]
¢þ
>WENV182504301
OIUT01004970
[OIUT] human gut metagenome; human gut
616
699
+
Ser
TGA
[ENA]
¢þ
>WENV182504314
OIUT01007713
[OIUT] human gut metagenome; human gut
624
550
-
Asp
GTC
[ENA]
¢þ
>WENV182504307
OIUT01006333
[OIUT] human gut metagenome; human gut
626
701
+
Val
TAC
[ENA]
¢þ
>WENV182504310
OIUT01006778
[OIUT] human gut metagenome; human gut
629
705
+
Ile2
CAT
[ENA]
¢þ
>WENV182504315
OIUT01007762
[OIUT] human gut metagenome; human gut
642
567
-
Asn
GTT
[ENA]
¢þ
>WENV182504280
OIUT01003351
[OIUT] human gut metagenome; human gut
667
592
-
Gly
GCC
[ENA]
¢þ
>WENV182504311
OIUT01007396
[OIUT] human gut metagenome; human gut
700
625
-
Thr
TGT
[ENA]
¢þ
>WENV182504302
OIUT01004970
[OIUT] human gut metagenome; human gut
708
783
+
Phe
GAA
[ENA]
¢þ
>WENV182504282
OIUT01003418
[OIUT] human gut metagenome; human gut
721
796
+
Pro
TGG
[ENA]
¢þ
>WENV182504274
OIUT01002146
[OIUT] human gut metagenome; human gut
730
657
-
Trp
CCA
[ENA]
¢þ
>WENV182504264
OIUT01001344
[OIUT] human gut metagenome; human gut
751
676
-
Phe
GAA
[ENA]
¢þ
>WENV182504291
OIUT01004069
[OIUT] human gut metagenome; human gut
758
843
+
Leu
TAG
[ENA]
¢þ
>WENV182504283
OIUT01003418
[OIUT] human gut metagenome; human gut
800
870
+
Gly
TCC
[ENA]
¢þ
>WENV182504303
OIUT01004970
[OIUT] human gut metagenome; human gut
803
877
+
Cys
GCA
[ENA]
¢þ
>WENV182504304
OIUT01005212
[OIUT] human gut metagenome; human gut
868
953
+
Ser
TGA
[ENA]
¢þ
>WENV182504284
OIUT01003418
[OIUT] human gut metagenome; human gut
914
989
+
Arg
TCT
[ENA]
¢þ
>WENV182504243
OIUT01000504
[OIUT] human gut metagenome; human gut
985
912
-
Trp
CCA
[ENA]
¢þ
>WENV182504290
OIUT01003997
[OIUT] human gut metagenome; human gut
989
913
-
Val
GAC
[ENA]
¢þ
>WENV182504262
OIUT01001213
[OIUT] human gut metagenome; human gut
993
919
-
Thr
TGT
[ENA]
¢þ
>WENV182504285
OIUT01003418
[OIUT] human gut metagenome; human gut
1025
1099
+
His
GTG
[ENA]
¢þ
>WENV182504216
OIUT01000231
[OIUT] human gut metagenome; human gut
1061
987
-
Arg
TCT
[ENA]
¢þ
>WENV182504286
OIUT01003418
[OIUT] human gut metagenome; human gut
1108
1179
+
Gln
TTG
[ENA]
¢þ
>WENV182504278
OIUT01002485
[OIUT] human gut metagenome; human gut
1110
1034
-
Met
CAT
[ENA]
¢þ
>WENV182504245
OIUT01000634
[OIUT] human gut metagenome; human gut
1178
1104
-
Arg
CCG
[ENA]
¢þ
>WENV182504263
OIUT01001272
[OIUT] human gut metagenome; human gut
1309
1225
-
Leu
TAG
[ENA]
¢þ
>WENV182504275
OIUT01002426
[OIUT] human gut metagenome; human gut
1384
1459
+
Lys
TTT
[ENA]
¢þ
>WENV182504273
OIUT01002140
[OIUT] human gut metagenome; human gut
1436
1510
+
His
GTG
[ENA]
¢þ
>WENV182504277
OIUT01002462
[OIUT] human gut metagenome; human gut
1444
1362
-
Leu
TAG
[ENA]
¢þ
>WENV182504276
OIUT01002426
[OIUT] human gut metagenome; human gut
1485
1560
+
Lys
CTT
[ENA]
¢þ
>WENV182504270
OIUT01001805
[OIUT] human gut metagenome; human gut
1515
1588
+
Trp
CCA
[ENA]
¢þ
>WENV182504258
OIUT01000944
[OIUT] human gut metagenome; human gut
1585
1660
+
Thr
TGT
[ENA]
¢þ
>WENV182504267
OIUT01001624
[OIUT] human gut metagenome; human gut
1693
1780
+
Ser
TGA
[ENA]
¢þ
>WENV182504269
OIUT01001800
[OIUT] human gut metagenome; human gut
1784
1709
-
Ala
CGC
[ENA]
¢þ
>WENV182504260
OIUT01001150
[OIUT] human gut metagenome; human gut
1803
1732
-
Gln
CTG
[ENA]
¢þ
>WENV182504261
OIUT01001155
[OIUT] human gut metagenome; human gut
2122
2193
+
Gln
TTG
[ENA]
¢þ
>WENV182504265
OIUT01001434
[OIUT] human gut metagenome; human gut
2178
2268
+
Ser
CGA
[ENA]
¢þ
>WENV182504266
OIUT01001518
[OIUT] human gut metagenome; human gut
2335
2408
+
Gly
CCC
[ENA]
¢þ
>WENV182504242
OIUT01000504
[OIUT] human gut metagenome; human gut
2350
2278
-
Thr
GGT
[ENA]
¢þ
>WENV182504241
OIUT01000504
[OIUT] human gut metagenome; human gut
2550
2467
-
Tyr
GTA
[ENA]
¢þ
>WENV182504223
OIUT01000287
[OIUT] human gut metagenome; human gut
2563
2490
-
Trp
CCA
[ENA]
¢þ
>WENV182504240
OIUT01000504
[OIUT] human gut metagenome; human gut
2667
2593
-
Thr
TGT
[ENA]
¢þ
>WENV182504259
OIUT01001141
[OIUT] human gut metagenome; human gut
3254
3180
-
Ala
GGC
[ENA]
¢þ
>WENV182504190
OIUT01000043
[OIUT] human gut metagenome; human gut
3766
3693
-
Lys
CTT
[ENA]
¢þ
>WENV182504239
OIUT01000471
[OIUT] human gut metagenome; human gut
3801
3873
+
Cys
GCA
[ENA]
¢þ
>WENV182504189
OIUT01000043
[OIUT] human gut metagenome; human gut
3859
3786
-
Lys
CTT
[ENA]
¢þ
>WENV182504257
OIUT01000837
[OIUT] human gut metagenome; human gut
3859
3932
+
Asn
GTT
[ENA]
¢þ
>WENV182504222
OIUT01000287
[OIUT] human gut metagenome; human gut
3926
3854
-
Thr
GGT
[ENA]
¢þ
>WENV182504188
OIUT01000043
[OIUT] human gut metagenome; human gut
3956
3883
-
Lys
CTT
[ENA]
¢þ
>WENV182504221
OIUT01000287
[OIUT] human gut metagenome; human gut
4026
3943
-
Tyr
GTA
[ENA]
¢þ
>WENV182504252
OIUT01000751
[OIUT] human gut metagenome; human gut
4125
4201
+
Pro
CGG
[ENA]
¢þ
>WENV182504251
OIUT01000712
[OIUT] human gut metagenome; human gut
4128
4053
-
Glu
TTC
[ENA]
¢þ
>WENV182504250
OIUT01000712
[OIUT] human gut metagenome; human gut
4212
4137
-
Ala
GGC
[ENA]
¢þ
>WENV182504220
OIUT01000287
[OIUT] human gut metagenome; human gut
4224
4150
-
Thr
TGT
[ENA]
¢þ
>WENV182504253
OIUT01000751
[OIUT] human gut metagenome; human gut
4308
4384
+
Pro
CGG
[ENA]
¢þ
>WENV182504249
OIUT01000712
[OIUT] human gut metagenome; human gut
4413
4338
-
Glu
TTC
[ENA]
¢þ
>WENV182504248
OIUT01000712
[OIUT] human gut metagenome; human gut
4497
4422
-
Ala
GGC
[ENA]
¢þ
>WENV182504254
OIUT01000762
[OIUT] human gut metagenome; human gut
4646
4569
-
Gln
TTG
[ENA]
¢þ
>WENV182504234
OIUT01000379
[OIUT] human gut metagenome; human gut
4706
4781
+
Trp
CCA
[ENA]
¢þ
>WENV182504206
OIUT01000176
[OIUT] human gut metagenome; human gut
5509
5582
+
Lys
CTT
[ENA]
¢þ
>WENV182504179
OIUT01000014
[OIUT] human gut metagenome; human gut
5575
5493
-
Arg
GCG
[ENA]
¢þ
>WENV182504225
OIUT01000309
[OIUT] human gut metagenome; human gut
5585
5656
+
Gln
TTG
[ENA]
¢þ
>WENV182504207
OIUT01000176
[OIUT] human gut metagenome; human gut
5614
5687
+
Lys
CTT
[ENA]
¢þ
>WENV182504244
OIUT01000559
[OIUT] human gut metagenome; human gut
5803
5730
-
Thr
CGT
[ENA]
¢þ
>WENV182504246
OIUT01000643
[OIUT] human gut metagenome; human gut
6280
6354
+
Arg
TCT
[ENA]
¢þ
>WENV182504193
OIUT01000049
[OIUT] human gut metagenome; human gut
6649
6723
+
Pro
GGG
[ENA]
¢þ
>WENV182504236
OIUT01000452
[OIUT] human gut metagenome; human gut
6693
6619
-
Asp
GTC
[ENA]
¢þ
>WENV182504237
OIUT01000462
[OIUT] human gut metagenome; human gut
6749
6837
+
Ser
GGA
[ENA]
¢þ
>WENV182504226
OIUT01000311
[OIUT] human gut metagenome; human gut
7369
7297
-
Arg
CCT
[ENA]
¢þ
>WENV182504231
OIUT01000350
[OIUT] human gut metagenome; human gut
7371
7446
+
Val
TAC
[ENA]
¢þ
>WENV182504232
OIUT01000350
[OIUT] human gut metagenome; human gut
7481
7556
+
Val
TAC
[ENA]
¢þ
>WENV182504210
OIUT01000195
[OIUT] human gut metagenome; human gut
7551
7625
+
Thr
TGT
[ENA]
¢þ
>WENV182504229
OIUT01000326
[OIUT] human gut metagenome; human gut
7932
7859
-
Phe
GAA
[ENA]
¢þ
>WENV182504230
OIUT01000327
[OIUT] human gut metagenome; human gut
8822
8897
+
Lys
TTT
[ENA]
¢þ
>WENV182504238
OIUT01000466
[OIUT] human gut metagenome; human gut
8947
8874
-
Thr
CGT
[ENA]
¢þ
>WENV182504195
OIUT01000059
[OIUT] human gut metagenome; human gut
9424
9511
+
Ser
GCT
[ENA]
¢þ
>WENV182504196
OIUT01000059
[OIUT] human gut metagenome; human gut
9576
9650
+
Glu
CTC
[ENA]
¢þ
>WENV182504199
OIUT01000079
[OIUT] human gut metagenome; human gut
9882
9956
+
His
GTG
[ENA]
¢þ
>WENV182504211
OIUT01000197
[OIUT] human gut metagenome; human gut
9898
9972
+
Met
CAT
[ENA]
¢þ
>WENV182504235
OIUT01000427
[OIUT] human gut metagenome; human gut
9949
9878
-
Gln
TTG
[ENA]
¢þ
>WENV182504212
OIUT01000197
[OIUT] human gut metagenome; human gut
10033
10107
+
Met
CAT
[ENA]
¢þ
>WENV182504191
OIUT01000046
[OIUT] human gut metagenome; human gut
10132
10047
-
Ser
TGA
[ENA]
¢þ
>WENV182504233
OIUT01000357
[OIUT] human gut metagenome; human gut
10228
10316
+
Ser
GGA
[ENA]
¢þ
>WENV182504217
OIUT01000239
[OIUT] human gut metagenome; human gut
10284
10211
-
Trp
CCA
[ENA]
¢þ
>WENV182504186
OIUT01000042
[OIUT] human gut metagenome; human gut
10871
10798
-
Phe
GAA
[ENA]
¢þ
>WENV182504185
OIUT01000042
[OIUT] human gut metagenome; human gut
11052
11125
+
Pro
CGG
[ENA]
¢þ
>WENV182504203
OIUT01000128
[OIUT] human gut metagenome; human gut
11642
11568
-
Asp
GTC
[ENA]
¢þ
>WENV182504219
OIUT01000259
[OIUT] human gut metagenome; human gut
12235
12161
-
Ala
GGC
[ENA]
¢þ
>WENV182504228
OIUT01000321
[OIUT] human gut metagenome; human gut
13601
13689
+
Ser
GGA
[ENA]
¢þ
>WENV182504184
OIUT01000040
[OIUT] human gut metagenome; human gut
13651
13724
+
Gly
CCC
[ENA]
¢þ
>WENV182504182
OIUT01000029
[OIUT] human gut metagenome; human gut
13657
13742
+
Ser
TGA
[ENA]
¢þ
>WENV182504218
OIUT01000253
[OIUT] human gut metagenome; human gut
14212
14140
-
Cys
GCA
[ENA]
¢þ
>WENV182504224
OIUT01000294
[OIUT] human gut metagenome; human gut
15008
15090
+
Leu
TAG
[ENA]
¢þ
>WENV182504213
OIUT01000203
[OIUT] human gut metagenome; human gut
16472
16398
-
Met
CAT
[ENA]
¢þ
>WENV182504215
OIUT01000228
[OIUT] human gut metagenome; human gut
17797
17871
+
Glu
TTC
[ENA]
¢þ
>WENV182504198
OIUT01000062
[OIUT] human gut metagenome; human gut
18426
18351
-
Pro
GGG
[ENA]
¢þ
>WENV182504194
OIUT01000050
[OIUT] human gut metagenome; human gut
19645
19719
+
Ala
GGC
[ENA]
¢þ
>WENV182504214
OIUT01000207
[OIUT] human gut metagenome; human gut
20648
20721
+
Gly
CCC
[ENA]
¢þ
>WENV182504209
OIUT01000193
[OIUT] human gut metagenome; human gut
22667
22595
-
Glu
CTC
[ENA]
¢þ
>WENV182504208
OIUT01000187
[OIUT] human gut metagenome; human gut
23067
22995
-
Arg
CCT
[ENA]
¢þ
>WENV182504192
OIUT01000048
[OIUT] human gut metagenome; human gut
23960
24034
+
Ile2
CAT
[ENA]
¢þ
>WENV182504174
OIUT01000006
[OIUT] human gut metagenome; human gut
24059
24141
+
Leu
TAG
[ENA]
¢þ
>WENV182504205
OIUT01000148
[OIUT] human gut metagenome; human gut
29017
28944
-
Lys
TTT
[ENA]
¢þ
>WENV182504204
OIUT01000135
[OIUT] human gut metagenome; human gut
30023
29951
-
Arg
CCG
[ENA]
¢þ
>WENV182504202
OIUT01000120
[OIUT] human gut metagenome; human gut
31019
31092
+
fMet
CAT
[ENA]
¢þ
>WENV182504201
OIUT01000118
[OIUT] human gut metagenome; human gut
34080
34153
+
Thr
CGT
[ENA]
¢þ
>WENV182504200
OIUT01000091
[OIUT] human gut metagenome; human gut
39548
39474
-
Ile2
CAT
[ENA]
¢þ
>WENV182504197
OIUT01000062
[OIUT] human gut metagenome; human gut
46536
46607
+
Gln
CTG
[ENA]
¢þ
>WENV182504181
OIUT01000025
[OIUT] human gut metagenome; human gut
49695
49768
+
Lys
TTT
[ENA]
¢þ
>WENV182504180
OIUT01000018
[OIUT] human gut metagenome; human gut
51809
51738
-
Gln
CTG
[ENA]
¢þ
>WENV182504187
OIUT01000043
[OIUT] human gut metagenome; human gut
53113
53188
+
Gly
CCC
[ENA]
¢þ
>WENV182504171
OIUT01000002
[OIUT] human gut metagenome; human gut
54262
54190
-
Arg
CCT
[ENA]
¢þ
>WENV182504183
OIUT01000029
[OIUT] human gut metagenome; human gut
58907
58982
+
His
GTG
[ENA]
¢þ
>WENV182504177
OIUT01000013
[OIUT] human gut metagenome; human gut
72984
73057
+
fMet
CAT
[ENA]
¢þ
>WENV182504178
OIUT01000014
[OIUT] human gut metagenome; human gut
77656
77582
-
Asp
GTC
[ENA]
¢þ
>WENV182504172
OIUT01000003
[OIUT] human gut metagenome; human gut
86687
86760
+
Gly
GCC
[ENA]
¢þ
>WENV182504173
OIUT01000003
[OIUT] human gut metagenome; human gut
86780
86864
+
Leu
TAA
[ENA]
¢þ
>WENV182504176
OIUT01000012
[OIUT] human gut metagenome; human gut
88754
88680
-
Glu
CTC
[ENA]
¢þ
>WENV182504175
OIUT01000007
[OIUT] human gut metagenome; human gut
98606
98534
-
Glu
TTC
[ENA]
¢þ
>WENV182504169
OIUT01000002
[OIUT] human gut metagenome; human gut
121161
121234
+
Gly
GCC
[ENA]
¢þ
>WENV182504170
OIUT01000002
[OIUT] human gut metagenome; human gut
121250
121335
+
Leu
TAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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