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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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|
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HOW TO USE
tRNA gene List
[OIVR] human gut metagenome; faeces
HIT:
32 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182508683
OIVR01001510
[OIVR] human gut metagenome; faeces
18
100
+
Tyr
GTA
[ENA]
¢þ
>WENV182508695
OIVR01002939
[OIVR] human gut metagenome; faeces
22
95
+
Arg
CCT
[ENA]
¢þ
>WENV182508670
OIVR01000212
[OIVR] human gut metagenome; faeces
66
148
+
Leu
TAG
[ENA]
¢þ
>WENV182508672
OIVR01000294
[OIVR] human gut metagenome; faeces
79
161
+
Tyr
GTA
[ENA]
¢þ
>WENV182508687
OIVR01002189
[OIVR] human gut metagenome; faeces
104
179
+
Ala
TGC
[ENA]
¢þ
>WENV182508694
OIVR01002845
[OIVR] human gut metagenome; faeces
159
247
+
Ser
GGA
[ENA]
¢þ
>WENV182508676
OIVR01000393
[OIVR] human gut metagenome; faeces
231
305
+
Asp
GTC
[ENA]
¢þ
>WENV182508673
OIVR01000294
[OIVR] human gut metagenome; faeces
263
335
+
Thr
GGT
[ENA]
¢þ
>WENV182508693
OIVR01002775
[OIVR] human gut metagenome; faeces
275
202
-
fMet
CAT
[ENA]
¢þ
>WENV182508665
OIVR01000024
[OIVR] human gut metagenome; faeces
311
237
-
Ile2
CAT
[ENA]
¢þ
>WENV182508692
OIVR01002383
[OIVR] human gut metagenome; faeces
338
263
-
Arg
TCT
[ENA]
¢þ
>WENV182508691
OIVR01002251
[OIVR] human gut metagenome; faeces
381
305
-
Met
CAT
[ENA]
¢þ
>WENV182508685
OIVR01001810
[OIVR] human gut metagenome; faeces
427
500
+
Lys
CTT
[ENA]
¢þ
>WENV182508686
OIVR01001977
[OIVR] human gut metagenome; faeces
433
359
-
Met
CAT
[ENA]
¢þ
>WENV182508696
OIVR01003490
[OIVR] human gut metagenome; faeces
457
532
+
Arg
TCT
[ENA]
¢þ
>WENV182508690
OIVR01002251
[OIVR] human gut metagenome; faeces
460
385
-
Thr
GGT
[ENA]
¢þ
>WENV182508689
OIVR01002251
[OIVR] human gut metagenome; faeces
547
472
-
fMet
CAT
[ENA]
¢þ
>WENV182508688
OIVR01002251
[OIVR] human gut metagenome; faeces
641
557
-
Tyr
GTA
[ENA]
¢þ
>WENV182508684
OIVR01001772
[OIVR] human gut metagenome; faeces
655
581
-
Pro
TGG
[ENA]
¢þ
>WENV182508666
OIVR01000053
[OIVR] human gut metagenome; faeces
819
891
+
Arg
CCT
[ENA]
¢þ
>WENV182508682
OIVR01001001
[OIVR] human gut metagenome; faeces
1082
1008
-
Ala
TGC
[ENA]
¢þ
>WENV182508667
OIVR01000075
[OIVR] human gut metagenome; faeces
1082
1156
+
Thr
TGT
[ENA]
¢þ
>WENV182508681
OIVR01000969
[OIVR] human gut metagenome; faeces
1083
1007
-
Ala
TGC
[ENA]
¢þ
>WENV182508680
OIVR01000968
[OIVR] human gut metagenome; faeces
1108
1034
-
Asn
GTT
[ENA]
¢þ
>WENV182508679
OIVR01000782
[OIVR] human gut metagenome; faeces
1179
1102
-
Pro
GGG
[ENA]
¢þ
>WENV182508668
OIVR01000075
[OIVR] human gut metagenome; faeces
1270
1341
+
Gly
CCC
[ENA]
¢þ
>WENV182508678
OIVR01000465
[OIVR] human gut metagenome; faeces
1275
1348
+
Lys
TTT
[ENA]
¢þ
>WENV182508674
OIVR01000294
[OIVR] human gut metagenome; faeces
1663
1736
+
Trp
CCA
[ENA]
¢þ
>WENV182508677
OIVR01000434
[OIVR] human gut metagenome; faeces
1786
1714
-
Glu
TTC
[ENA]
¢þ
>WENV182508675
OIVR01000310
[OIVR] human gut metagenome; faeces
1896
1812
-
Leu
CAA
[ENA]
¢þ
>WENV182508671
OIVR01000278
[OIVR] human gut metagenome; faeces
2049
1978
-
Gln
CTG
[ENA]
¢þ
>WENV182508669
OIVR01000124
[OIVR] human gut metagenome; faeces
2473
2386
-
Leu
TAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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