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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OIVU] human gut metagenome; faeces
HIT:
32 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182508771
OIVU01000589
[OIVU] human gut metagenome; faeces
32
105
+
Gly
GCC
[ENA]
¢þ
>WENV182508766
OIVU01000227
[OIVU] human gut metagenome; faeces
79
4
-
Asp
GTC
[ENA]
¢þ
>WENV182508777
OIVU01000774
[OIVU] human gut metagenome; faeces
111
27
-
Leu
TAG
[ENA]
¢þ
>WENV182508772
OIVU01000589
[OIVU] human gut metagenome; faeces
121
206
+
Leu
TAA
[ENA]
¢þ
>WENV182508769
OIVU01000505
[OIVU] human gut metagenome; faeces
143
69
-
Thr
TGT
[ENA]
¢þ
>WENV182508778
OIVU01000891
[OIVU] human gut metagenome; faeces
163
252
+
Ser
GCT
[ENA]
¢þ
>WENV182508785
OIVU01001894
[OIVU] human gut metagenome; faeces
178
107
-
Gly
CCC
[ENA]
¢þ
>WENV182508770
OIVU01000521
[OIVU] human gut metagenome; faeces
238
162
-
Ile
GAT
[ENA]
¢þ
>WENV182508779
OIVU01000891
[OIVU] human gut metagenome; faeces
256
329
+
Lys
CTT
[ENA]
¢þ
>WENV182508776
OIVU01000711
[OIVU] human gut metagenome; faeces
263
348
+
Ser
TGA
[ENA]
¢þ
>WENV182508784
OIVU01001894
[OIVU] human gut metagenome; faeces
283
210
-
Thr
CGT
[ENA]
¢þ
>WENV182508782
OIVU01001270
[OIVU] human gut metagenome; faeces
387
461
+
Pro
TGG
[ENA]
¢þ
>WENV182508767
OIVU01000347
[OIVU] human gut metagenome; faeces
429
357
-
Arg
CCT
[ENA]
¢þ
>WENV182508773
OIVU01000609
[OIVU] human gut metagenome; faeces
724
799
+
Val
TAC
[ENA]
¢þ
>WENV182508775
OIVU01000685
[OIVU] human gut metagenome; faeces
740
667
-
fMet
CAT
[ENA]
¢þ
>WENV182508783
OIVU01001305
[OIVU] human gut metagenome; faeces
769
682
-
Leu
TAA
[ENA]
¢þ
>WENV182508781
OIVU01001043
[OIVU] human gut metagenome; faeces
784
859
+
Arg
TCT
[ENA]
¢þ
>WENV182508780
OIVU01001022
[OIVU] human gut metagenome; faeces
939
1012
+
Phe
GAA
[ENA]
¢þ
>WENV182508774
OIVU01000643
[OIVU] human gut metagenome; faeces
1787
1713
-
Cys
GCA
[ENA]
¢þ
>WENV182508759
OIVU01000105
[OIVU] human gut metagenome; faeces
1905
1834
-
Gln
CTG
[ENA]
¢þ
>WENV182508761
OIVU01000149
[OIVU] human gut metagenome; faeces
2169
2098
-
Gln
TTG
[ENA]
¢þ
>WENV182508768
OIVU01000444
[OIVU] human gut metagenome; faeces
2223
2297
+
Asn
GTT
[ENA]
¢þ
>WENV182508755
OIVU01000010
[OIVU] human gut metagenome; faeces
2247
2159
-
Ser
GGA
[ENA]
¢þ
>WENV182508760
OIVU01000138
[OIVU] human gut metagenome; faeces
2409
2335
-
Asp
GTC
[ENA]
¢þ
>WENV182508754
OIVU01000006
[OIVU] human gut metagenome; faeces
3009
3093
+
Leu
CAA
[ENA]
¢þ
>WENV182508765
OIVU01000227
[OIVU] human gut metagenome; faeces
3359
3285
-
Ala
TGC
[ENA]
¢þ
>WENV182508764
OIVU01000227
[OIVU] human gut metagenome; faeces
3450
3376
-
Ile
GAT
[ENA]
¢þ
>WENV182508763
OIVU01000158
[OIVU] human gut metagenome; faeces
4116
4190
+
Ile2
CAT
[ENA]
¢þ
>WENV182508762
OIVU01000154
[OIVU] human gut metagenome; faeces
4303
4376
+
Lys
TTT
[ENA]
¢þ
>WENV182508756
OIVU01000052
[OIVU] human gut metagenome; faeces
4461
4543
+
Tyr
GTA
[ENA]
¢þ
>WENV182508757
OIVU01000052
[OIVU] human gut metagenome; faeces
4643
4715
+
Thr
GGT
[ENA]
¢þ
>WENV182508758
OIVU01000052
[OIVU] human gut metagenome; faeces
6043
6116
+
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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