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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OIVV] human gut metagenome; faeces
HIT:
19 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182508790
OIVV01000344
[OIVV] human gut metagenome; faeces
16
104
+
Ser
GGA
[ENA]
¢þ
>WENV182508802
OIVV01002472
[OIVV] human gut metagenome; faeces
23
98
+
Asn
GTT
[ENA]
¢þ
>WENV182508795
OIVV01000784
[OIVV] human gut metagenome; faeces
91
165
+
Ile
GAT
[ENA]
¢þ
>WENV182508788
OIVV01000291
[OIVV] human gut metagenome; faeces
93
20
-
Thr
CGT
[ENA]
¢þ
>WENV182508803
OIVV01002472
[OIVV] human gut metagenome; faeces
100
175
+
Glu
TTC
[ENA]
¢þ
>WENV182508799
OIVV01001535
[OIVV] human gut metagenome; faeces
141
68
-
fMet
CAT
[ENA]
¢þ
>WENV182508798
OIVV01001393
[OIVV] human gut metagenome; faeces
162
88
-
Asn
GTT
[ENA]
¢þ
>WENV182508804
OIVV01002572
[OIVV] human gut metagenome; faeces
164
93
-
Gln
CTG
[ENA]
¢þ
>WENV182508796
OIVV01000784
[OIVV] human gut metagenome; faeces
182
256
+
Ala
TGC
[ENA]
¢þ
>WENV182508794
OIVV01000609
[OIVV] human gut metagenome; faeces
252
181
-
Gln
TTG
[ENA]
¢þ
>WENV182508786
OIVV01000003
[OIVV] human gut metagenome; faeces
402
476
+
Thr
TGT
[ENA]
¢þ
>WENV182508801
OIVV01001830
[OIVV] human gut metagenome; faeces
424
509
+
Ser
TGA
[ENA]
¢þ
>WENV182508787
OIVV01000003
[OIVV] human gut metagenome; faeces
493
575
+
Tyr
GTA
[ENA]
¢þ
>WENV182508800
OIVV01001655
[OIVV] human gut metagenome; faeces
499
572
+
Lys
CTT
[ENA]
¢þ
>WENV182508797
OIVV01000897
[OIVV] human gut metagenome; faeces
1088
1015
-
Phe
GAA
[ENA]
¢þ
>WENV182508793
OIVV01000436
[OIVV] human gut metagenome; faeces
1166
1094
-
Arg
CCT
[ENA]
¢þ
>WENV182508789
OIVV01000298
[OIVV] human gut metagenome; faeces
1338
1411
+
Lys
TTT
[ENA]
¢þ
>WENV182508791
OIVV01000368
[OIVV] human gut metagenome; faeces
1499
1573
+
Asp
GTC
[ENA]
¢þ
>WENV182508792
OIVV01000430
[OIVV] human gut metagenome; faeces
1724
1808
+
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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