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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OIVX] human gut metagenome; faeces
HIT:
14 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182508869
OIVX01001730
[OIVX] human gut metagenome; faeces
28
101
+
Gly
CCC
[ENA]
¢þ
>WENV182508857
OIVX01000010
[OIVX] human gut metagenome; faeces
97
21
-
Asp
GTC
[ENA]
¢þ
>WENV182508865
OIVX01000484
[OIVX] human gut metagenome; faeces
124
209
+
Ser
GCT
[ENA]
¢þ
>WENV182508866
OIVX01000484
[OIVX] human gut metagenome; faeces
215
290
+
Arg
ACG
[ENA]
¢þ
>WENV182508860
OIVX01000128
[OIVX] human gut metagenome; faeces
234
308
+
Thr
TGT
[ENA]
¢þ
>WENV182508868
OIVX01000749
[OIVX] human gut metagenome; faeces
238
161
-
Pro
GGG
[ENA]
¢þ
>WENV182508867
OIVX01000731
[OIVX] human gut metagenome; faeces
242
169
-
Lys
CTT
[ENA]
¢þ
>WENV182508861
OIVX01000128
[OIVX] human gut metagenome; faeces
326
408
+
Tyr
GTA
[ENA]
¢þ
>WENV182508859
OIVX01000015
[OIVX] human gut metagenome; faeces
423
349
-
Ala
TGC
[ENA]
¢þ
>WENV182508862
OIVX01000128
[OIVX] human gut metagenome; faeces
503
575
+
Thr
GGT
[ENA]
¢þ
>WENV182508858
OIVX01000015
[OIVX] human gut metagenome; faeces
522
448
-
Ile
GAT
[ENA]
¢þ
>WENV182508864
OIVX01000224
[OIVX] human gut metagenome; faeces
736
809
+
Trp
CCA
[ENA]
¢þ
>WENV182508863
OIVX01000179
[OIVX] human gut metagenome; faeces
1100
1024
-
Ala
GGC
[ENA]
¢þ
>WENV182508856
OIVX01000010
[OIVX] human gut metagenome; faeces
3457
3382
-
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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