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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OIWB] human gut metagenome; faeces
HIT:
35 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182509367
OIWB01000477
[OIWB] human gut metagenome; faeces
56
131
+
Lys
CTT
[ENA]
¢þ
>WENV182509371
OIWB01000561
[OIWB] human gut metagenome; faeces
62
137
+
His
GTG
[ENA]
¢þ
>WENV182509363
OIWB01000353
[OIWB] human gut metagenome; faeces
90
165
+
Ala
TGC
[ENA]
¢þ
>WENV182509383
OIWB01002291
[OIWB] human gut metagenome; faeces
92
168
+
Asp
GTC
[ENA]
¢þ
>WENV182509364
OIWB01000391
[OIWB] human gut metagenome; faeces
119
44
-
Asn
GTT
[ENA]
¢þ
>WENV182509368
OIWB01000477
[OIWB] human gut metagenome; faeces
138
213
+
Val
TAC
[ENA]
¢þ
>WENV182509372
OIWB01000561
[OIWB] human gut metagenome; faeces
147
222
+
Trp
CCA
[ENA]
¢þ
>WENV182509378
OIWB01001466
[OIWB] human gut metagenome; faeces
179
105
-
Glu
CTC
[ENA]
¢þ
>WENV182509384
OIWB01002291
[OIWB] human gut metagenome; faeces
218
293
+
Phe
GAA
[ENA]
¢þ
>WENV182509373
OIWB01000561
[OIWB] human gut metagenome; faeces
230
320
+
Ser
GCT
[ENA]
¢þ
>WENV182509388
OIWB01002606
[OIWB] human gut metagenome; faeces
274
346
+
Arg
CCT
[ENA]
¢þ
>WENV182509385
OIWB01002291
[OIWB] human gut metagenome; faeces
302
377
+
Thr
TGT
[ENA]
¢þ
>WENV182509361
OIWB01000279
[OIWB] human gut metagenome; faeces
329
253
-
Arg
CCT
[ENA]
¢þ
>WENV182509387
OIWB01002420
[OIWB] human gut metagenome; faeces
336
245
-
Ser
GGA
[ENA]
¢þ
>WENV182509381
OIWB01001762
[OIWB] human gut metagenome; faeces
352
427
+
Val
TAC
[ENA]
¢þ
>WENV182509386
OIWB01002291
[OIWB] human gut metagenome; faeces
389
459
+
Gly
TCC
[ENA]
¢þ
>WENV182509379
OIWB01001607
[OIWB] human gut metagenome; faeces
449
525
+
Pro
TGG
[ENA]
¢þ
>WENV182509376
OIWB01000674
[OIWB] human gut metagenome; faeces
458
383
-
Gln
CTG
[ENA]
¢þ
>WENV182509377
OIWB01001197
[OIWB] human gut metagenome; faeces
461
549
+
Ser
CGA
[ENA]
¢þ
>WENV182509382
OIWB01002227
[OIWB] human gut metagenome; faeces
505
431
-
Met
CAT
[ENA]
¢þ
>WENV182509380
OIWB01001607
[OIWB] human gut metagenome; faeces
533
609
+
Arg
TCT
[ENA]
¢þ
>WENV182509360
OIWB01000244
[OIWB] human gut metagenome; faeces
560
484
-
Met
CAT
[ENA]
¢þ
>WENV182509375
OIWB01000668
[OIWB] human gut metagenome; faeces
576
652
+
Pro
CGG
[ENA]
¢þ
>WENV182509362
OIWB01000326
[OIWB] human gut metagenome; faeces
618
693
+
Ala
CGC
[ENA]
¢þ
>WENV182509365
OIWB01000392
[OIWB] human gut metagenome; faeces
633
559
-
Thr
TGT
[ENA]
¢þ
>WENV182509359
OIWB01000244
[OIWB] human gut metagenome; faeces
651
566
-
Tyr
GTA
[ENA]
¢þ
>WENV182509374
OIWB01000667
[OIWB] human gut metagenome; faeces
811
894
+
Leu
CAA
[ENA]
¢þ
>WENV182509370
OIWB01000531
[OIWB] human gut metagenome; faeces
830
754
-
Ile
GAT
[ENA]
¢þ
>WENV182509369
OIWB01000531
[OIWB] human gut metagenome; faeces
909
834
-
Ala
TGC
[ENA]
¢þ
>WENV182509366
OIWB01000406
[OIWB] human gut metagenome; faeces
1082
992
-
Ser
GGA
[ENA]
¢þ
>WENV182509356
OIWB01000089
[OIWB] human gut metagenome; faeces
1309
1232
-
Arg
ACG
[ENA]
¢þ
>WENV182509358
OIWB01000104
[OIWB] human gut metagenome; faeces
1519
1435
-
Leu
GAG
[ENA]
¢þ
>WENV182509357
OIWB01000104
[OIWB] human gut metagenome; faeces
1642
1554
-
Leu
TAA
[ENA]
¢þ
>WENV182509355
OIWB01000071
[OIWB] human gut metagenome; faeces
2165
2080
-
Ser
TGA
[ENA]
¢þ
>WENV182509354
OIWB01000021
[OIWB] human gut metagenome; faeces
3437
3364
-
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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