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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OIWG] human gut metagenome; faeces
HIT:
25 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182509516
OIWG01003960
[OIWG] human gut metagenome; faeces
88
160
+
Glu
TTC
[ENA]
¢þ
>WENV182509510
OIWG01002606
[OIWG] human gut metagenome; faeces
95
171
+
Arg
ACG
[ENA]
¢þ
>WENV182509512
OIWG01003007
[OIWG] human gut metagenome; faeces
159
87
-
Glu
TTC
[ENA]
¢þ
>WENV182509514
OIWG01003775
[OIWG] human gut metagenome; faeces
206
281
+
Pro
TGG
[ENA]
¢þ
>WENV182509500
OIWG01000651
[OIWG] human gut metagenome; faeces
236
161
-
Val
TAC
[ENA]
¢þ
>WENV182509505
OIWG01001528
[OIWG] human gut metagenome; faeces
246
173
-
Lys
TTT
[ENA]
¢þ
>WENV182509515
OIWG01003775
[OIWG] human gut metagenome; faeces
286
356
+
Gly
TCC
[ENA]
¢þ
>WENV182509511
OIWG01003007
[OIWG] human gut metagenome; faeces
289
215
-
Asn
GTT
[ENA]
¢þ
>WENV182509517
OIWG01004221
[OIWG] human gut metagenome; faeces
305
231
-
Arg
TCT
[ENA]
¢þ
>WENV182509501
OIWG01000940
[OIWG] human gut metagenome; faeces
312
396
+
Leu
CAA
[ENA]
¢þ
>WENV182509508
OIWG01001923
[OIWG] human gut metagenome; faeces
337
410
+
fMet
CAT
[ENA]
¢þ
>WENV182509509
OIWG01002375
[OIWG] human gut metagenome; faeces
354
428
+
Ile2
CAT
[ENA]
¢þ
>WENV182509513
OIWG01003258
[OIWG] human gut metagenome; faeces
383
454
+
Gln
CTG
[ENA]
¢þ
>WENV182509506
OIWG01001535
[OIWG] human gut metagenome; faeces
398
471
+
Gly
GCC
[ENA]
¢þ
>WENV182509497
OIWG01000266
[OIWG] human gut metagenome; faeces
447
375
-
Arg
CCT
[ENA]
¢þ
>WENV182509502
OIWG01001160
[OIWG] human gut metagenome; faeces
464
551
+
Ser
GCT
[ENA]
¢þ
>WENV182509507
OIWG01001607
[OIWG] human gut metagenome; faeces
551
476
-
Pro
GGG
[ENA]
¢þ
>WENV182509503
OIWG01001160
[OIWG] human gut metagenome; faeces
609
681
+
Glu
CTC
[ENA]
¢þ
>WENV182509499
OIWG01000449
[OIWG] human gut metagenome; faeces
654
571
-
Leu
CAG
[ENA]
¢þ
>WENV182509498
OIWG01000309
[OIWG] human gut metagenome; faeces
662
589
-
Trp
CCA
[ENA]
¢þ
>WENV182509504
OIWG01001160
[OIWG] human gut metagenome; faeces
697
770
+
Lys
CTT
[ENA]
¢þ
>WENV182509493
OIWG01000049
[OIWG] human gut metagenome; faeces
1148
1222
+
Thr
TGT
[ENA]
¢þ
>WENV182509494
OIWG01000049
[OIWG] human gut metagenome; faeces
1267
1350
+
Tyr
GTA
[ENA]
¢þ
>WENV182509495
OIWG01000049
[OIWG] human gut metagenome; faeces
1440
1512
+
Thr
GGT
[ENA]
¢þ
>WENV182509496
OIWG01000097
[OIWG] human gut metagenome; faeces
1790
1708
-
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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