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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OJAK] seawater metagenome; Sea water
HIT:
33 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182540589
OJAK01001122
[OJAK] seawater metagenome; Sea water
1
76
+
Val
TAC
[ENA]
¢þ
>WENV182540595
OJAK01001347
[OJAK] seawater metagenome; Sea water
28
104
+
Pro
TGG
[ENA]
¢þ
>WENV182540587
OJAK01001060
[OJAK] seawater metagenome; Sea water
55
131
+
Ile
GAT
[ENA]
¢þ
>WENV182540599
OJAK01001378
[OJAK] seawater metagenome; Sea water
63
150
+
Ser
GGA
[ENA]
¢þ
>WENV182540600
OJAK01001459
[OJAK] seawater metagenome; Sea water
85
158
+
Cys
GCA
[ENA]
¢þ
>WENV182540607
OJAK01001757
[OJAK] seawater metagenome; Sea water
97
173
+
Trp
CCA
[ENA]
¢þ
>WENV182540583
OJAK01000209
[OJAK] seawater metagenome; Sea water
101
185
+
Tyr
GTA
[ENA]
¢þ
>WENV182540590
OJAK01001122
[OJAK] seawater metagenome; Sea water
104
180
+
Asp
GTC
[ENA]
¢þ
>WENV182540604
OJAK01001690
[OJAK] seawater metagenome; Sea water
107
197
+
Ser
TGA
[ENA]
¢þ
>WENV182540596
OJAK01001347
[OJAK] seawater metagenome; Sea water
135
211
+
Arg
TCT
[ENA]
¢þ
>WENV182540588
OJAK01001060
[OJAK] seawater metagenome; Sea water
168
243
+
Ala
TGC
[ENA]
¢þ
>WENV182540601
OJAK01001459
[OJAK] seawater metagenome; Sea water
195
281
+
Leu
TAA
[ENA]
¢þ
>WENV182540608
OJAK01001874
[OJAK] seawater metagenome; Sea water
203
278
+
Val
TAC
[ENA]
¢þ
>WENV182540582
OJAK01000112
[OJAK] seawater metagenome; Sea water
212
137
-
His
GTG
[ENA]
¢þ
>WENV182540577
OJAK01000036
[OJAK] seawater metagenome; Sea water
230
305
+
Trp
CCA
[ENA]
¢þ
>WENV182540584
OJAK01000209
[OJAK] seawater metagenome; Sea water
231
305
+
Gly
TCC
[ENA]
¢þ
>WENV182540591
OJAK01001122
[OJAK] seawater metagenome; Sea water
232
307
+
Val
TAC
[ENA]
¢þ
>WENV182540605
OJAK01001690
[OJAK] seawater metagenome; Sea water
247
339
+
Ser
GCT
[ENA]
¢þ
>WENV182540586
OJAK01000305
[OJAK] seawater metagenome; Sea water
275
361
+
Leu
GAG
[ENA]
¢þ
>WENV182540585
OJAK01000209
[OJAK] seawater metagenome; Sea water
317
392
+
Thr
GGT
[ENA]
¢þ
>WENV182540578
OJAK01000084
[OJAK] seawater metagenome; Sea water
320
394
+
Gln
TTG
[ENA]
¢þ
>WENV182540581
OJAK01000112
[OJAK] seawater metagenome; Sea water
329
253
-
Arg
TCT
[ENA]
¢þ
>WENV182540597
OJAK01001347
[OJAK] seawater metagenome; Sea water
330
406
+
Pro
TGG
[ENA]
¢þ
>WENV182540592
OJAK01001122
[OJAK] seawater metagenome; Sea water
335
411
+
Asp
GTC
[ENA]
¢þ
>WENV182540606
OJAK01001690
[OJAK] seawater metagenome; Sea water
375
451
+
Arg
GCG
[ENA]
¢þ
>WENV182540602
OJAK01001459
[OJAK] seawater metagenome; Sea water
409
484
+
Gly
GCC
[ENA]
¢þ
>WENV182540580
OJAK01000112
[OJAK] seawater metagenome; Sea water
434
358
-
Pro
TGG
[ENA]
¢þ
>WENV182540609
OJAK01001874
[OJAK] seawater metagenome; Sea water
434
509
+
Val
TAC
[ENA]
¢þ
>WENV182540593
OJAK01001122
[OJAK] seawater metagenome; Sea water
439
514
+
Val
TAC
[ENA]
¢þ
>WENV182540598
OJAK01001347
[OJAK] seawater metagenome; Sea water
465
541
+
Arg
TCT
[ENA]
¢þ
>WENV182540603
OJAK01001459
[OJAK] seawater metagenome; Sea water
523
598
+
Gly
GCC
[ENA]
¢þ
>WENV182540579
OJAK01000112
[OJAK] seawater metagenome; Sea water
550
475
-
Asn
GTT
[ENA]
¢þ
>WENV182540594
OJAK01001122
[OJAK] seawater metagenome; Sea water
598
674
+
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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