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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJAN] seawater metagenome; Sea water
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182540633
OJAN01001154
[OJAN] seawater metagenome; Sea water
56
131
+
Ala
GGC
[ENA]
¢þ
>WENV182540620
OJAN01000169
[OJAN] seawater metagenome; Sea water
59
135
+
Pro
TGG
[ENA]
¢þ
>WENV182540631
OJAN01000872
[OJAN] seawater metagenome; Sea water
65
149
+
Leu
TAG
[ENA]
¢þ
>WENV182540634
OJAN01001154
[OJAN] seawater metagenome; Sea water
137
212
+
Glu
TTC
[ENA]
¢þ
>WENV182540615
OJAN01000033
[OJAN] seawater metagenome; Sea water
143
227
+
Leu
TAG
[ENA]
¢þ
>WENV182540637
OJAN01001547
[OJAN] seawater metagenome; Sea water
147
223
+
Ile
GAT
[ENA]
¢þ
>WENV182540636
OJAN01001544
[OJAN] seawater metagenome; Sea water
148
61
-
Ser
GGA
[ENA]
¢þ
>WENV182540621
OJAN01000169
[OJAN] seawater metagenome; Sea water
160
236
+
Arg
TCT
[ENA]
¢þ
>WENV182540610
OJAN01000001
[OJAN] seawater metagenome; Sea water
171
254
+
Tyr
GTA
[ENA]
¢þ
>WENV182540630
OJAN01000711
[OJAN] seawater metagenome; Sea water
186
111
-
Gly
GCC
[ENA]
¢þ
>WENV182540623
OJAN01000173
[OJAN] seawater metagenome; Sea water
186
269
+
Tyr
GTA
[ENA]
¢þ
>WENV182540626
OJAN01000217
[OJAN] seawater metagenome; Sea water
188
264
+
Arg
TCT
[ENA]
¢þ
>WENV182540638
OJAN01001547
[OJAN] seawater metagenome; Sea water
238
313
+
Ala
TGC
[ENA]
¢þ
>WENV182540635
OJAN01001154
[OJAN] seawater metagenome; Sea water
247
322
+
Gly
GCC
[ENA]
¢þ
>WENV182540622
OJAN01000169
[OJAN] seawater metagenome; Sea water
267
342
+
His
GTG
[ENA]
¢þ
>WENV182540639
OJAN01001784
[OJAN] seawater metagenome; Sea water
297
371
+
Gln
TTG
[ENA]
¢þ
>WENV182540624
OJAN01000173
[OJAN] seawater metagenome; Sea water
326
399
+
Gly
TCC
[ENA]
¢þ
>WENV182540611
OJAN01000001
[OJAN] seawater metagenome; Sea water
331
404
+
Gly
TCC
[ENA]
¢þ
>WENV182540627
OJAN01000217
[OJAN] seawater metagenome; Sea water
345
420
+
His
GTG
[ENA]
¢þ
>WENV182540625
OJAN01000173
[OJAN] seawater metagenome; Sea water
425
499
+
Thr
GGT
[ENA]
¢þ
>WENV182540632
OJAN01000946
[OJAN] seawater metagenome; Sea water
435
508
+
Lys
CTT
[ENA]
¢þ
>WENV182540612
OJAN01000001
[OJAN] seawater metagenome; Sea water
449
524
+
Thr
GGT
[ENA]
¢þ
>WENV182540628
OJAN01000243
[OJAN] seawater metagenome; Sea water
646
722
+
Pro
GGG
[ENA]
¢þ
>WENV182540619
OJAN01000096
[OJAN] seawater metagenome; Sea water
813
737
-
fMet
CAT
[ENA]
¢þ
>WENV182540618
OJAN01000096
[OJAN] seawater metagenome; Sea water
1096
1012
-
Leu
GAG
[ENA]
¢þ
>WENV182540629
OJAN01000309
[OJAN] seawater metagenome; Sea water
1158
1083
-
Gln
TTG
[ENA]
¢þ
>WENV182540613
OJAN01000001
[OJAN] seawater metagenome; Sea water
1938
2013
+
Trp
CCA
[ENA]
¢þ
>WENV182540617
OJAN01000092
[OJAN] seawater metagenome; Sea water
2149
2225
+
Ile2
CAT
[ENA]
¢þ
>WENV182540616
OJAN01000081
[OJAN] seawater metagenome; Sea water
2223
2148
-
Gln
TTG
[ENA]
¢þ
>WENV182540614
OJAN01000001
[OJAN] seawater metagenome; Sea water
18755
18830
+
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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