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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJAP] seawater metagenome; Sea water
HIT:
119 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182540797
OJAP01010495
[OJAP] seawater metagenome; Sea water
5
81
+
Ile
GAT
[ENA]
¢þ
>WENV182540768
OJAP01007554
[OJAP] seawater metagenome; Sea water
9
84
+
Val
TAC
[ENA]
¢þ
>WENV182540716
OJAP01000685
[OJAP] seawater metagenome; Sea water
40
116
+
Pro
GGG
[ENA]
¢þ
>WENV182540754
OJAP01004581
[OJAP] seawater metagenome; Sea water
47
122
+
Thr
TGT
[ENA]
¢þ
>WENV182540796
OJAP01009921
[OJAP] seawater metagenome; Sea water
57
133
+
Met
CAT
[ENA]
¢þ
>WENV182540788
OJAP01009436
[OJAP] seawater metagenome; Sea water
69
144
+
Ala
GGC
[ENA]
¢þ
>WENV182540727
OJAP01001397
[OJAP] seawater metagenome; Sea water
76
3
-
Gly
CCC
[ENA]
¢þ
>WENV182540767
OJAP01007464
[OJAP] seawater metagenome; Sea water
77
152
+
Val
TAC
[ENA]
¢þ
>WENV182540747
OJAP01002845
[OJAP] seawater metagenome; Sea water
79
154
+
Thr
GGT
[ENA]
¢þ
>WENV182540737
OJAP01001762
[OJAP] seawater metagenome; Sea water
80
155
+
His
GTG
[ENA]
¢þ
>WENV182540741
OJAP01002558
[OJAP] seawater metagenome; Sea water
88
1
-
Ser
GCT
[ENA]
¢þ
>WENV182540765
OJAP01007420
[OJAP] seawater metagenome; Sea water
96
172
+
Ile
GAT
[ENA]
¢þ
>WENV182540798
OJAP01010495
[OJAP] seawater metagenome; Sea water
101
176
+
Ala
TGC
[ENA]
¢þ
>WENV182540746
OJAP01002676
[OJAP] seawater metagenome; Sea water
106
181
+
Glu
TTC
[ENA]
¢þ
>WENV182540752
OJAP01003418
[OJAP] seawater metagenome; Sea water
133
57
-
Arg
ACG
[ENA]
¢þ
>WENV182540713
OJAP01000421
[OJAP] seawater metagenome; Sea water
136
61
-
Trp
CCA
[ENA]
¢þ
>WENV182540799
OJAP01010754
[OJAP] seawater metagenome; Sea water
138
213
+
Gly
GCC
[ENA]
¢þ
>WENV182540787
OJAP01008969
[OJAP] seawater metagenome; Sea water
140
66
-
Gln
TTG
[ENA]
¢þ
>WENV182540717
OJAP01000738
[OJAP] seawater metagenome; Sea water
146
70
-
Pro
CGG
[ENA]
¢þ
>WENV182540753
OJAP01003628
[OJAP] seawater metagenome; Sea water
154
68
-
Leu
CAA
[ENA]
¢þ
>WENV182540755
OJAP01004581
[OJAP] seawater metagenome; Sea water
155
238
+
Tyr
GTA
[ENA]
¢þ
>WENV182540775
OJAP01008641
[OJAP] seawater metagenome; Sea water
161
85
-
Arg
TCT
[ENA]
¢þ
>WENV182540779
OJAP01008838
[OJAP] seawater metagenome; Sea water
162
237
+
Thr
TGT
[ENA]
¢þ
>WENV182540789
OJAP01009436
[OJAP] seawater metagenome; Sea water
164
239
+
Glu
TTC
[ENA]
¢þ
>WENV182540793
OJAP01009857
[OJAP] seawater metagenome; Sea water
167
243
+
Arg
TCT
[ENA]
¢þ
>WENV182540695
OJAP01000179
[OJAP] seawater metagenome; Sea water
173
98
-
His
GTG
[ENA]
¢þ
>WENV182540758
OJAP01005192
[OJAP] seawater metagenome; Sea water
178
103
-
Arg
CCT
[ENA]
¢þ
>WENV182540712
OJAP01000416
[OJAP] seawater metagenome; Sea water
178
103
-
Val
TAC
[ENA]
¢þ
>WENV182540776
OJAP01008685
[OJAP] seawater metagenome; Sea water
179
255
+
Ile
GAT
[ENA]
¢þ
>WENV182540722
OJAP01000875
[OJAP] seawater metagenome; Sea water
194
109
-
Leu
GAG
[ENA]
¢þ
>WENV182540761
OJAP01006975
[OJAP] seawater metagenome; Sea water
211
286
+
Thr
TGT
[ENA]
¢þ
>WENV182540729
OJAP01001513
[OJAP] seawater metagenome; Sea water
223
298
+
Trp
CCA
[ENA]
¢þ
>WENV182540769
OJAP01007554
[OJAP] seawater metagenome; Sea water
226
301
+
Val
TAC
[ENA]
¢þ
>WENV182540723
OJAP01000895
[OJAP] seawater metagenome; Sea water
249
175
-
Thr
GGT
[ENA]
¢þ
>WENV182540756
OJAP01004581
[OJAP] seawater metagenome; Sea water
258
332
+
Gly
TCC
[ENA]
¢þ
>WENV182540786
OJAP01008969
[OJAP] seawater metagenome; Sea water
265
181
-
Leu
TAG
[ENA]
¢þ
>WENV182540766
OJAP01007420
[OJAP] seawater metagenome; Sea water
269
344
+
Ala
TGC
[ENA]
¢þ
>WENV182540760
OJAP01005740
[OJAP] seawater metagenome; Sea water
270
184
-
Leu
TAA
[ENA]
¢þ
>WENV182540800
OJAP01010754
[OJAP] seawater metagenome; Sea water
270
343
+
Cys
GCA
[ENA]
¢þ
>WENV182540777
OJAP01008685
[OJAP] seawater metagenome; Sea water
276
351
+
Ala
TGC
[ENA]
¢þ
>WENV182540694
OJAP01000179
[OJAP] seawater metagenome; Sea water
277
201
-
Arg
TCT
[ENA]
¢þ
>WENV182540780
OJAP01008838
[OJAP] seawater metagenome; Sea water
278
361
+
Tyr
GTA
[ENA]
¢þ
>WENV182540790
OJAP01009436
[OJAP] seawater metagenome; Sea water
279
354
+
Gly
GCC
[ENA]
¢þ
>WENV182540762
OJAP01006975
[OJAP] seawater metagenome; Sea water
294
378
+
Tyr
GTA
[ENA]
¢þ
>WENV182540774
OJAP01008641
[OJAP] seawater metagenome; Sea water
296
220
-
Pro
TGG
[ENA]
¢þ
>WENV182540794
OJAP01009857
[OJAP] seawater metagenome; Sea water
338
413
+
His
GTG
[ENA]
¢þ
>WENV182540757
OJAP01004581
[OJAP] seawater metagenome; Sea water
348
422
+
Thr
GGT
[ENA]
¢þ
>WENV182540801
OJAP01010754
[OJAP] seawater metagenome; Sea water
348
434
+
Leu
TAA
[ENA]
¢þ
>WENV182540781
OJAP01008838
[OJAP] seawater metagenome; Sea water
372
446
+
Gly
TCC
[ENA]
¢þ
>WENV182540693
OJAP01000179
[OJAP] seawater metagenome; Sea water
380
304
-
Pro
TGG
[ENA]
¢þ
>WENV182540763
OJAP01006975
[OJAP] seawater metagenome; Sea water
417
491
+
Gly
TCC
[ENA]
¢þ
>WENV182540791
OJAP01009436
[OJAP] seawater metagenome; Sea water
418
491
+
Cys
GCA
[ENA]
¢þ
>WENV182540785
OJAP01008969
[OJAP] seawater metagenome; Sea water
433
357
-
Met
CAT
[ENA]
¢þ
>WENV182540759
OJAP01005720
[OJAP] seawater metagenome; Sea water
435
508
+
Lys
CTT
[ENA]
¢þ
>WENV182540792
OJAP01009470
[OJAP] seawater metagenome; Sea water
452
377
-
Ala
TGC
[ENA]
¢þ
>WENV182540778
OJAP01008685
[OJAP] seawater metagenome; Sea water
452
528
+
Ile
GAT
[ENA]
¢þ
>WENV182540770
OJAP01007554
[OJAP] seawater metagenome; Sea water
456
531
+
Val
TAC
[ENA]
¢þ
>WENV182540782
OJAP01008838
[OJAP] seawater metagenome; Sea water
465
540
+
Thr
GGT
[ENA]
¢þ
>WENV182540692
OJAP01000179
[OJAP] seawater metagenome; Sea water
466
391
-
Asn
GTT
[ENA]
¢þ
>WENV182540795
OJAP01009857
[OJAP] seawater metagenome; Sea water
469
553
+
Leu
TAG
[ENA]
¢þ
>WENV182540773
OJAP01008641
[OJAP] seawater metagenome; Sea water
492
416
-
Arg
TCT
[ENA]
¢þ
>WENV182540764
OJAP01006975
[OJAP] seawater metagenome; Sea water
498
573
+
Thr
GGT
[ENA]
¢þ
>WENV182540784
OJAP01008969
[OJAP] seawater metagenome; Sea water
513
439
-
Gln
TTG
[ENA]
¢þ
>WENV182540736
OJAP01001756
[OJAP] seawater metagenome; Sea water
540
465
-
Trp
CCA
[ENA]
¢þ
>WENV182540715
OJAP01000553
[OJAP] seawater metagenome; Sea water
545
469
-
Pro
GGG
[ENA]
¢þ
>WENV182540772
OJAP01008641
[OJAP] seawater metagenome; Sea water
599
523
-
Pro
TGG
[ENA]
¢þ
>WENV182540783
OJAP01008969
[OJAP] seawater metagenome; Sea water
638
554
-
Leu
TAG
[ENA]
¢þ
>WENV182540771
OJAP01007998
[OJAP] seawater metagenome; Sea water
680
594
-
Leu
CAG
[ENA]
¢þ
>WENV182540720
OJAP01000752
[OJAP] seawater metagenome; Sea water
737
662
-
Thr
GGT
[ENA]
¢þ
>WENV182540719
OJAP01000752
[OJAP] seawater metagenome; Sea water
816
743
-
Gly
TCC
[ENA]
¢þ
>WENV182540749
OJAP01003396
[OJAP] seawater metagenome; Sea water
818
893
+
Thr
TGT
[ENA]
¢þ
>WENV182540691
OJAP01000169
[OJAP] seawater metagenome; Sea water
839
915
+
Val
GAC
[ENA]
¢þ
>WENV182540750
OJAP01003396
[OJAP] seawater metagenome; Sea water
971
1054
+
Tyr
GTA
[ENA]
¢þ
>WENV182540718
OJAP01000752
[OJAP] seawater metagenome; Sea water
979
896
-
Tyr
GTA
[ENA]
¢þ
>WENV182540751
OJAP01003396
[OJAP] seawater metagenome; Sea water
1131
1204
+
Gly
TCC
[ENA]
¢þ
>WENV182540743
OJAP01002617
[OJAP] seawater metagenome; Sea water
1173
1259
+
Leu
GAG
[ENA]
¢þ
>WENV182540748
OJAP01003111
[OJAP] seawater metagenome; Sea water
1259
1183
-
Trp
CCA
[ENA]
¢þ
>WENV182540744
OJAP01002617
[OJAP] seawater metagenome; Sea water
1308
1384
+
fMet
CAT
[ENA]
¢þ
>WENV182540742
OJAP01002597
[OJAP] seawater metagenome; Sea water
1347
1422
+
Asn
GTT
[ENA]
¢þ
>WENV182540739
OJAP01002221
[OJAP] seawater metagenome; Sea water
1360
1435
+
Asn
GTT
[ENA]
¢þ
>WENV182540738
OJAP01002034
[OJAP] seawater metagenome; Sea water
1364
1274
-
Ser
TGA
[ENA]
¢þ
>WENV182540745
OJAP01002631
[OJAP] seawater metagenome; Sea water
1439
1364
-
Trp
CCA
[ENA]
¢þ
>WENV182540740
OJAP01002555
[OJAP] seawater metagenome; Sea water
1442
1527
+
Leu
GAG
[ENA]
¢þ
>WENV182540732
OJAP01001665
[OJAP] seawater metagenome; Sea water
1839
1765
-
Gln
CTG
[ENA]
¢þ
>WENV182540734
OJAP01001747
[OJAP] seawater metagenome; Sea water
1849
1939
+
Ser
GCT
[ENA]
¢þ
>WENV182540733
OJAP01001719
[OJAP] seawater metagenome; Sea water
1937
1864
-
Gly
CCC
[ENA]
¢þ
>WENV182540731
OJAP01001665
[OJAP] seawater metagenome; Sea water
1966
1890
-
Met
CAT
[ENA]
¢þ
>WENV182540735
OJAP01001756
[OJAP] seawater metagenome; Sea water
1985
1910
-
Thr
GGT
[ENA]
¢þ
>WENV182540728
OJAP01001417
[OJAP] seawater metagenome; Sea water
2030
1956
-
Gln
TTG
[ENA]
¢þ
>WENV182540730
OJAP01001665
[OJAP] seawater metagenome; Sea water
2054
1980
-
Gln
TTG
[ENA]
¢þ
>WENV182540721
OJAP01000844
[OJAP] seawater metagenome; Sea water
2189
2113
-
Asp
GTC
[ENA]
¢þ
>WENV182540726
OJAP01001162
[OJAP] seawater metagenome; Sea water
2475
2389
-
Leu
CAG
[ENA]
¢þ
>WENV182540724
OJAP01001012
[OJAP] seawater metagenome; Sea water
2485
2561
+
Ile2
CAT
[ENA]
¢þ
>WENV182540725
OJAP01001122
[OJAP] seawater metagenome; Sea water
2581
2667
+
Leu
CAA
[ENA]
¢þ
>WENV182540710
OJAP01000393
[OJAP] seawater metagenome; Sea water
2704
2619
-
Leu
TAA
[ENA]
¢þ
>WENV182540709
OJAP01000393
[OJAP] seawater metagenome; Sea water
2828
2755
-
Cys
GCA
[ENA]
¢þ
>WENV182540708
OJAP01000393
[OJAP] seawater metagenome; Sea water
3206
3131
-
Gly
GCC
[ENA]
¢þ
>WENV182540714
OJAP01000502
[OJAP] seawater metagenome; Sea water
3322
3247
-
Trp
CCA
[ENA]
¢þ
>WENV182540705
OJAP01000349
[OJAP] seawater metagenome; Sea water
3352
3426
+
Gln
TTG
[ENA]
¢þ
>WENV182540702
OJAP01000321
[OJAP] seawater metagenome; Sea water
3383
3307
-
fMet
CAT
[ENA]
¢þ
>WENV182540701
OJAP01000321
[OJAP] seawater metagenome; Sea water
3680
3595
-
Leu
GAG
[ENA]
¢þ
>WENV182540685
OJAP01000007
[OJAP] seawater metagenome; Sea water
3887
3812
-
Gln
TTG
[ENA]
¢þ
>WENV182540689
OJAP01000048
[OJAP] seawater metagenome; Sea water
4182
4106
-
Pro
CGG
[ENA]
¢þ
>WENV182540711
OJAP01000414
[OJAP] seawater metagenome; Sea water
4193
4269
+
Met
CAT
[ENA]
¢þ
>WENV182540699
OJAP01000246
[OJAP] seawater metagenome; Sea water
4231
4306
+
Phe
GAA
[ENA]
¢þ
>WENV182540706
OJAP01000380
[OJAP] seawater metagenome; Sea water
4582
4672
+
Ser
GCT
[ENA]
¢þ
>WENV182540707
OJAP01000380
[OJAP] seawater metagenome; Sea water
4756
4832
+
Arg
ACG
[ENA]
¢þ
>WENV182540703
OJAP01000333
[OJAP] seawater metagenome; Sea water
5109
5185
+
Ile2
CAT
[ENA]
¢þ
>WENV182540704
OJAP01000336
[OJAP] seawater metagenome; Sea water
5123
5199
+
Pro
GGG
[ENA]
¢þ
>WENV182540698
OJAP01000205
[OJAP] seawater metagenome; Sea water
5299
5212
-
Ser
GGA
[ENA]
¢þ
>WENV182540700
OJAP01000247
[OJAP] seawater metagenome; Sea water
6249
6325
+
Arg
CCG
[ENA]
¢þ
>WENV182540686
OJAP01000013
[OJAP] seawater metagenome; Sea water
6675
6750
+
Gly
GCC
[ENA]
¢þ
>WENV182540687
OJAP01000013
[OJAP] seawater metagenome; Sea water
6803
6876
+
Cys
GCA
[ENA]
¢þ
>WENV182540696
OJAP01000184
[OJAP] seawater metagenome; Sea water
7000
7075
+
Lys
TTT
[ENA]
¢þ
>WENV182540688
OJAP01000013
[OJAP] seawater metagenome; Sea water
7024
7110
+
Leu
TAA
[ENA]
¢þ
>WENV182540697
OJAP01000188
[OJAP] seawater metagenome; Sea water
7045
6970
-
Lys
TTT
[ENA]
¢þ
>WENV182540683
OJAP01000004
[OJAP] seawater metagenome; Sea water
10348
10438
+
Ser
TGA
[ENA]
¢þ
>WENV182540690
OJAP01000049
[OJAP] seawater metagenome; Sea water
10832
10908
+
Met
CAT
[ENA]
¢þ
>WENV182540684
OJAP01000004
[OJAP] seawater metagenome; Sea water
12700
12610
-
Ser
TGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK