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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJBL] seawater metagenome; Sea water
HIT:
151 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182544963
OJBL01001105
[OJBL] seawater metagenome; Sea water
32
116
+
Tyr
GTA
[ENA]
¢þ
>WENV182545050
OJBL01006978
[OJBL] seawater metagenome; Sea water
45
132
+
Leu
TAA
[ENA]
¢þ
>WENV182545062
OJBL01008915
[OJBL] seawater metagenome; Sea water
48
124
+
fMet
CAT
[ENA]
¢þ
>WENV182545034
OJBL01005067
[OJBL] seawater metagenome; Sea water
49
128
+
Leu
TAG
[ENA]
¢þ
>WENV182544969
OJBL01001236
[OJBL] seawater metagenome; Sea water
51
124
+
Gln
TTG
[ENA]
¢þ
>WENV182544917
OJBL01000073
[OJBL] seawater metagenome; Sea water
78
4
-
Glu
TTC
[ENA]
¢þ
>WENV182545006
OJBL01002352
[OJBL] seawater metagenome; Sea water
84
156
+
Thr
GGT
[ENA]
¢þ
>WENV182545061
OJBL01008864
[OJBL] seawater metagenome; Sea water
94
21
-
Cys
GCA
[ENA]
¢þ
>WENV182545005
OJBL01002287
[OJBL] seawater metagenome; Sea water
108
37
-
Pro
AGG
[ENA]
¢þ
>WENV182545053
OJBL01007597
[OJBL] seawater metagenome; Sea water
114
205
+
Ser
TGA
[ENA]
¢þ
>WENV182545029
OJBL01004245
[OJBL] seawater metagenome; Sea water
120
46
-
Arg
TCT
[ENA]
¢þ
>WENV182545011
OJBL01002461
[OJBL] seawater metagenome; Sea water
134
62
-
Lys
CTT
[ENA]
¢þ
>WENV182544983
OJBL01001535
[OJBL] seawater metagenome; Sea water
151
78
-
Gln
TTG
[ENA]
¢þ
>WENV182544964
OJBL01001105
[OJBL] seawater metagenome; Sea water
153
228
+
Gly
TCC
[ENA]
¢þ
>WENV182545026
OJBL01003614
[OJBL] seawater metagenome; Sea water
157
73
-
Leu
CAA
[ENA]
¢þ
>WENV182545059
OJBL01008789
[OJBL] seawater metagenome; Sea water
164
239
+
Gly
GCC
[ENA]
¢þ
>WENV182545048
OJBL01006720
[OJBL] seawater metagenome; Sea water
171
98
-
Pro
TGG
[ENA]
¢þ
>WENV182545007
OJBL01002352
[OJBL] seawater metagenome; Sea water
178
252
+
Met
CAT
[ENA]
¢þ
>WENV182545032
OJBL01004473
[OJBL] seawater metagenome; Sea water
180
105
-
Lys
TTT
[ENA]
¢þ
>WENV182545054
OJBL01007646
[OJBL] seawater metagenome; Sea water
184
259
+
Phe
GAA
[ENA]
¢þ
>WENV182544926
OJBL01000163
[OJBL] seawater metagenome; Sea water
186
111
-
Thr
GGT
[ENA]
¢þ
>WENV182545049
OJBL01006951
[OJBL] seawater metagenome; Sea water
189
262
+
His
GTG
[ENA]
¢þ
>WENV182544998
OJBL01002190
[OJBL] seawater metagenome; Sea water
193
268
+
Asn
GTT
[ENA]
¢þ
>WENV182544966
OJBL01001160
[OJBL] seawater metagenome; Sea water
198
271
+
Glu
TTC
[ENA]
¢þ
>WENV182544990
OJBL01001901
[OJBL] seawater metagenome; Sea water
203
286
+
Leu
CAG
[ENA]
¢þ
>WENV182544956
OJBL01000921
[OJBL] seawater metagenome; Sea water
211
127
-
Leu
TAA
[ENA]
¢þ
>WENV182545038
OJBL01005259
[OJBL] seawater metagenome; Sea water
213
289
+
Ile2
CAT
[ENA]
¢þ
>WENV182545009
OJBL01002461
[OJBL] seawater metagenome; Sea water
227
310
+
Ser
AGA
[ENA]
¢þ
>WENV182545051
OJBL01007184
[OJBL] seawater metagenome; Sea water
265
354
+
Ser
TGA
[ENA]
¢þ
>WENV182545004
OJBL01002287
[OJBL] seawater metagenome; Sea water
275
203
-
Val
CAC
[ENA]
¢þ
>WENV182545008
OJBL01002352
[OJBL] seawater metagenome; Sea water
281
356
+
Lys
CTT
[ENA]
¢þ
>WENV182545055
OJBL01008220
[OJBL] seawater metagenome; Sea water
286
368
+
Leu
CAA
[ENA]
¢þ
>WENV182545042
OJBL01005554
[OJBL] seawater metagenome; Sea water
287
213
-
His
GTG
[ENA]
¢þ
>WENV182545060
OJBL01008789
[OJBL] seawater metagenome; Sea water
287
360
+
Cys
GCA
[ENA]
¢þ
>WENV182544967
OJBL01001160
[OJBL] seawater metagenome; Sea water
290
364
+
Asp
GTC
[ENA]
¢þ
>WENV182545045
OJBL01006292
[OJBL] seawater metagenome; Sea water
319
230
-
Ser
GCT
[ENA]
¢þ
>WENV182545052
OJBL01007211
[OJBL] seawater metagenome; Sea water
340
266
-
Asp
GTC
[ENA]
¢þ
>WENV182545030
OJBL01004381
[OJBL] seawater metagenome; Sea water
343
269
-
Met
CAT
[ENA]
¢þ
>WENV182545000
OJBL01002287
[OJBL] seawater metagenome; Sea water
360
435
+
Arg
ACG
[ENA]
¢þ
>WENV182545024
OJBL01003472
[OJBL] seawater metagenome; Sea water
393
477
+
Ser
GCT
[ENA]
¢þ
>WENV182545057
OJBL01008547
[OJBL] seawater metagenome; Sea water
398
471
+
Val
AAC
[ENA]
¢þ
>WENV182545044
OJBL01005856
[OJBL] seawater metagenome; Sea water
399
475
+
fMet
CAT
[ENA]
¢þ
>WENV182544954
OJBL01000773
[OJBL] seawater metagenome; Sea water
417
489
+
Arg
TCG
[ENA]
¢þ
>WENV182544996
OJBL01002154
[OJBL] seawater metagenome; Sea water
421
346
-
Leu
TAA
[ENA]
¢þ
>WENV182544950
OJBL01000610
[OJBL] seawater metagenome; Sea water
430
354
-
Arg
ACG
[ENA]
¢þ
>WENV182545041
OJBL01005543
[OJBL] seawater metagenome; Sea water
452
368
-
Leu
CAA
[ENA]
¢þ
>WENV182545046
OJBL01006306
[OJBL] seawater metagenome; Sea water
466
390
-
Arg
TCT
[ENA]
¢þ
>WENV182545023
OJBL01003402
[OJBL] seawater metagenome; Sea water
467
383
-
Leu
GAG
[ENA]
¢þ
>WENV182544938
OJBL01000330
[OJBL] seawater metagenome; Sea water
475
399
-
fMet
CAT
[ENA]
¢þ
>WENV182544991
OJBL01001901
[OJBL] seawater metagenome; Sea water
481
555
+
Arg
TCT
[ENA]
¢þ
>WENV182545058
OJBL01008684
[OJBL] seawater metagenome; Sea water
483
554
+
Ala
CGC
[ENA]
¢þ
>WENV182544984
OJBL01001586
[OJBL] seawater metagenome; Sea water
498
572
+
Glu
CTC
[ENA]
¢þ
>WENV182545018
OJBL01002915
[OJBL] seawater metagenome; Sea water
504
431
-
Thr
GGT
[ENA]
¢þ
>WENV182545025
OJBL01003472
[OJBL] seawater metagenome; Sea water
508
583
+
Pro
TGG
[ENA]
¢þ
>WENV182545040
OJBL01005444
[OJBL] seawater metagenome; Sea water
511
585
+
Ala
CGC
[ENA]
¢þ
>WENV182545010
OJBL01002461
[OJBL] seawater metagenome; Sea water
512
582
+
Gly
GCC
[ENA]
¢þ
>WENV182544986
OJBL01001613
[OJBL] seawater metagenome; Sea water
543
467
-
Asp
GTC
[ENA]
¢þ
>WENV182545039
OJBL01005417
[OJBL] seawater metagenome; Sea water
547
621
+
Glu
TTC
[ENA]
¢þ
>WENV182544976
OJBL01001393
[OJBL] seawater metagenome; Sea water
550
475
-
Trp
CCA
[ENA]
¢þ
>WENV182544968
OJBL01001178
[OJBL] seawater metagenome; Sea water
552
468
-
Leu
CAA
[ENA]
¢þ
>WENV182545003
OJBL01002287
[OJBL] seawater metagenome; Sea water
563
489
-
Asn
GTT
[ENA]
¢þ
>WENV182545056
OJBL01008262
[OJBL] seawater metagenome; Sea water
570
498
-
Glu
CTC
[ENA]
¢þ
>WENV182545020
OJBL01003284
[OJBL] seawater metagenome; Sea water
578
651
+
Arg
CCG
[ENA]
¢þ
>WENV182544989
OJBL01001879
[OJBL] seawater metagenome; Sea water
591
665
+
fMet
CAT
[ENA]
¢þ
>WENV182545012
OJBL01002638
[OJBL] seawater metagenome; Sea water
597
669
+
Gly
GCC
[ENA]
¢þ
>WENV182544970
OJBL01001240
[OJBL] seawater metagenome; Sea water
597
673
+
Ile2
CAT
[ENA]
¢þ
>WENV182545035
OJBL01005067
[OJBL] seawater metagenome; Sea water
605
532
-
Asn
GTT
[ENA]
¢þ
>WENV182545033
OJBL01004749
[OJBL] seawater metagenome; Sea water
611
538
-
Gln
TTG
[ENA]
¢þ
>WENV182544947
OJBL01000578
[OJBL] seawater metagenome; Sea water
614
699
+
Tyr
GTA
[ENA]
¢þ
>WENV182544961
OJBL01001067
[OJBL] seawater metagenome; Sea water
619
545
-
Gly
GCC
[ENA]
¢þ
>WENV182545047
OJBL01006315
[OJBL] seawater metagenome; Sea water
626
553
-
Glu
CTC
[ENA]
¢þ
>WENV182544985
OJBL01001613
[OJBL] seawater metagenome; Sea water
632
557
-
Val
TAC
[ENA]
¢þ
>WENV182545021
OJBL01003322
[OJBL] seawater metagenome; Sea water
633
557
-
Met
CAT
[ENA]
¢þ
>WENV182545037
OJBL01005075
[OJBL] seawater metagenome; Sea water
645
572
-
Ala
TGC
[ENA]
¢þ
>WENV182545027
OJBL01003917
[OJBL] seawater metagenome; Sea water
649
576
-
Gly
TCC
[ENA]
¢þ
>WENV182545022
OJBL01003385
[OJBL] seawater metagenome; Sea water
654
725
+
Asp
GTC
[ENA]
¢þ
>WENV182545001
OJBL01002287
[OJBL] seawater metagenome; Sea water
663
734
+
Glu
CTC
[ENA]
¢þ
>WENV182545017
OJBL01002915
[OJBL] seawater metagenome; Sea water
670
597
-
Gly
TCC
[ENA]
¢þ
>WENV182545031
OJBL01004449
[OJBL] seawater metagenome; Sea water
675
748
+
Ala
GGC
[ENA]
¢þ
>WENV182545013
OJBL01002638
[OJBL] seawater metagenome; Sea water
697
781
+
Leu
TAA
[ENA]
¢þ
>WENV182545043
OJBL01005649
[OJBL] seawater metagenome; Sea water
704
630
-
Pro
GGG
[ENA]
¢þ
>WENV182545036
OJBL01005075
[OJBL] seawater metagenome; Sea water
725
652
-
Ile
GAT
[ENA]
¢þ
>WENV182544929
OJBL01000205
[OJBL] seawater metagenome; Sea water
735
661
-
Ala
TGC
[ENA]
¢þ
>WENV182544948
OJBL01000578
[OJBL] seawater metagenome; Sea water
746
819
+
Gly
TCC
[ENA]
¢þ
>WENV182544965
OJBL01001137
[OJBL] seawater metagenome; Sea water
748
665
-
Leu
TAG
[ENA]
¢þ
>WENV182545028
OJBL01004195
[OJBL] seawater metagenome; Sea water
760
669
-
Ser
GCT
[ENA]
¢þ
>WENV182544979
OJBL01001482
[OJBL] seawater metagenome; Sea water
766
841
+
Ala
GGC
[ENA]
¢þ
>WENV182545016
OJBL01002915
[OJBL] seawater metagenome; Sea water
780
698
-
Tyr
GTA
[ENA]
¢þ
>WENV182544994
OJBL01002075
[OJBL] seawater metagenome; Sea water
801
875
+
Ile
GAT
[ENA]
¢þ
>WENV182545014
OJBL01002772
[OJBL] seawater metagenome; Sea water
802
887
+
Leu
GAG
[ENA]
¢þ
>WENV182544992
OJBL01001901
[OJBL] seawater metagenome; Sea water
815
886
+
Cys
GCA
[ENA]
¢þ
>WENV182544971
OJBL01001267
[OJBL] seawater metagenome; Sea water
846
922
+
Val
TAC
[ENA]
¢þ
>WENV182545019
OJBL01003060
[OJBL] seawater metagenome; Sea water
873
797
-
Ile2
CAT
[ENA]
¢þ
>WENV182545015
OJBL01002915
[OJBL] seawater metagenome; Sea water
892
818
-
Thr
TGT
[ENA]
¢þ
>WENV182544995
OJBL01002075
[OJBL] seawater metagenome; Sea water
897
972
+
Ala
TGC
[ENA]
¢þ
>WENV182544928
OJBL01000205
[OJBL] seawater metagenome; Sea water
898
824
-
Ile
GAT
[ENA]
¢þ
>WENV182544981
OJBL01001495
[OJBL] seawater metagenome; Sea water
917
843
-
Val
TAC
[ENA]
¢þ
>WENV182545002
OJBL01002287
[OJBL] seawater metagenome; Sea water
929
846
-
Ser
GCT
[ENA]
¢þ
>WENV182544974
OJBL01001319
[OJBL] seawater metagenome; Sea water
929
1004
+
Trp
CCA
[ENA]
¢þ
>WENV182544987
OJBL01001636
[OJBL] seawater metagenome; Sea water
932
859
-
Arg
TCT
[ENA]
¢þ
>WENV182544972
OJBL01001267
[OJBL] seawater metagenome; Sea water
932
1008
+
Asp
GTC
[ENA]
¢þ
>WENV182544993
OJBL01001901
[OJBL] seawater metagenome; Sea water
1014
943
-
Pro
TGG
[ENA]
¢þ
>WENV182544999
OJBL01002274
[OJBL] seawater metagenome; Sea water
1021
1095
+
Thr
GGT
[ENA]
¢þ
>WENV182544980
OJBL01001489
[OJBL] seawater metagenome; Sea water
1031
1118
+
Ser
TGA
[ENA]
¢þ
>WENV182544997
OJBL01002173
[OJBL] seawater metagenome; Sea water
1051
1127
+
fMet
CAT
[ENA]
¢þ
>WENV182544958
OJBL01000946
[OJBL] seawater metagenome; Sea water
1079
1152
+
Cys
GCA
[ENA]
¢þ
>WENV182544962
OJBL01001077
[OJBL] seawater metagenome; Sea water
1084
1157
+
Trp
CCA
[ENA]
¢þ
>WENV182544977
OJBL01001412
[OJBL] seawater metagenome; Sea water
1110
1185
+
Thr
CGT
[ENA]
¢þ
>WENV182544988
OJBL01001662
[OJBL] seawater metagenome; Sea water
1154
1238
+
Leu
TAA
[ENA]
¢þ
>WENV182544959
OJBL01000946
[OJBL] seawater metagenome; Sea water
1203
1278
+
Asn
GTT
[ENA]
¢þ
>WENV182544982
OJBL01001534
[OJBL] seawater metagenome; Sea water
1246
1321
+
Glu
TTC
[ENA]
¢þ
>WENV182544960
OJBL01000985
[OJBL] seawater metagenome; Sea water
1254
1179
-
Thr
TGT
[ENA]
¢þ
>WENV182544975
OJBL01001329
[OJBL] seawater metagenome; Sea water
1254
1327
+
Cys
GCA
[ENA]
¢þ
>WENV182544978
OJBL01001443
[OJBL] seawater metagenome; Sea water
1259
1334
+
Phe
GAA
[ENA]
¢þ
>WENV182544914
OJBL01000063
[OJBL] seawater metagenome; Sea water
1323
1247
-
Arg
TCG
[ENA]
¢þ
>WENV182544951
OJBL01000713
[OJBL] seawater metagenome; Sea water
1339
1412
+
Trp
CCA
[ENA]
¢þ
>WENV182544973
OJBL01001300
[OJBL] seawater metagenome; Sea water
1403
1490
+
Ser
TGA
[ENA]
¢þ
>WENV182544953
OJBL01000752
[OJBL] seawater metagenome; Sea water
1538
1462
-
Met
CAT
[ENA]
¢þ
>WENV182544957
OJBL01000939
[OJBL] seawater metagenome; Sea water
1542
1624
+
Leu
TAG
[ENA]
¢þ
>WENV182544952
OJBL01000747
[OJBL] seawater metagenome; Sea water
1545
1634
+
Ser
GGA
[ENA]
¢þ
>WENV182544932
OJBL01000236
[OJBL] seawater metagenome; Sea water
1616
1541
-
Lys
TTT
[ENA]
¢þ
>WENV182544944
OJBL01000441
[OJBL] seawater metagenome; Sea water
1669
1584
-
Leu
CAA
[ENA]
¢þ
>WENV182544955
OJBL01000888
[OJBL] seawater metagenome; Sea water
1692
1616
-
Arg
ACG
[ENA]
¢þ
>WENV182544943
OJBL01000434
[OJBL] seawater metagenome; Sea water
1692
1766
+
Arg
TCG
[ENA]
¢þ
>WENV182544945
OJBL01000442
[OJBL] seawater metagenome; Sea water
1729
1657
-
Arg
CCT
[ENA]
¢þ
>WENV182544915
OJBL01000069
[OJBL] seawater metagenome; Sea water
1739
1814
+
Phe
GAA
[ENA]
¢þ
>WENV182544940
OJBL01000374
[OJBL] seawater metagenome; Sea water
1815
1891
+
Pro
TGG
[ENA]
¢þ
>WENV182544935
OJBL01000282
[OJBL] seawater metagenome; Sea water
1820
1896
+
Ile2
CAT
[ENA]
¢þ
>WENV182544925
OJBL01000154
[OJBL] seawater metagenome; Sea water
1953
2028
+
Thr
TGT
[ENA]
¢þ
>WENV182544916
OJBL01000069
[OJBL] seawater metagenome; Sea water
2030
2104
+
His
GTG
[ENA]
¢þ
>WENV182544949
OJBL01000578
[OJBL] seawater metagenome; Sea water
2064
2139
+
Trp
CCA
[ENA]
¢þ
>WENV182544937
OJBL01000318
[OJBL] seawater metagenome; Sea water
2076
2000
-
fMet
CAT
[ENA]
¢þ
>WENV182544941
OJBL01000387
[OJBL] seawater metagenome; Sea water
2140
2216
+
Ile
GAT
[ENA]
¢þ
>WENV182544942
OJBL01000387
[OJBL] seawater metagenome; Sea water
2230
2305
+
Ala
TGC
[ENA]
¢þ
>WENV182544946
OJBL01000520
[OJBL] seawater metagenome; Sea water
2371
2282
-
Ser
GGA
[ENA]
¢þ
>WENV182544930
OJBL01000217
[OJBL] seawater metagenome; Sea water
2408
2481
+
Thr
GGT
[ENA]
¢þ
>WENV182544927
OJBL01000182
[OJBL] seawater metagenome; Sea water
2467
2382
-
Leu
GAG
[ENA]
¢þ
>WENV182544933
OJBL01000260
[OJBL] seawater metagenome; Sea water
2577
2505
-
Gln
TTG
[ENA]
¢þ
>WENV182544939
OJBL01000341
[OJBL] seawater metagenome; Sea water
2608
2693
+
Leu
CAA
[ENA]
¢þ
>WENV182544936
OJBL01000299
[OJBL] seawater metagenome; Sea water
2837
2762
-
Lys
TTT
[ENA]
¢þ
>WENV182544934
OJBL01000280
[OJBL] seawater metagenome; Sea water
3072
3144
+
Gln
CTG
[ENA]
¢þ
>WENV182544924
OJBL01000136
[OJBL] seawater metagenome; Sea water
3088
3013
-
Ala
TGC
[ENA]
¢þ
>WENV182544931
OJBL01000229
[OJBL] seawater metagenome; Sea water
3130
3214
+
Leu
TAG
[ENA]
¢þ
>WENV182544919
OJBL01000101
[OJBL] seawater metagenome; Sea water
3139
3064
-
Ala
TGC
[ENA]
¢þ
>WENV182544923
OJBL01000136
[OJBL] seawater metagenome; Sea water
3172
3095
-
Ile
GAT
[ENA]
¢þ
>WENV182544918
OJBL01000101
[OJBL] seawater metagenome; Sea water
3227
3151
-
Ile
GAT
[ENA]
¢þ
>WENV182544922
OJBL01000126
[OJBL] seawater metagenome; Sea water
3271
3198
-
Ala
TGC
[ENA]
¢þ
>WENV182544921
OJBL01000126
[OJBL] seawater metagenome; Sea water
3351
3275
-
Ile
GAT
[ENA]
¢þ
>WENV182544920
OJBL01000120
[OJBL] seawater metagenome; Sea water
3794
3870
+
Pro
TGG
[ENA]
¢þ
>WENV182544912
OJBL01000019
[OJBL] seawater metagenome; Sea water
4046
4137
+
Ser
GCT
[ENA]
¢þ
>WENV182544913
OJBL01000040
[OJBL] seawater metagenome; Sea water
4502
4428
-
Gly
GCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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