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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJBQ] seawater metagenome; Sea water
HIT:
39 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182546908
OJBQ01001676
[OJBQ] seawater metagenome; Sea water
42
117
+
Gln
TTG
[ENA]
¢þ
>WENV182546893
OJBQ01000040
[OJBQ] seawater metagenome; Sea water
73
-1
-
Asp
GTC
[ENA]
¢þ
>WENV182546912
OJBQ01002347
[OJBQ] seawater metagenome; Sea water
78
154
+
Pro
TGG
[ENA]
¢þ
>WENV182546905
OJBQ01000997
[OJBQ] seawater metagenome; Sea water
118
189
+
Val
TAC
[ENA]
¢þ
>WENV182546900
OJBQ01000452
[OJBQ] seawater metagenome; Sea water
122
197
+
Thr
GGT
[ENA]
¢þ
>WENV182546913
OJBQ01002347
[OJBQ] seawater metagenome; Sea water
180
256
+
Arg
TCT
[ENA]
¢þ
>WENV182546899
OJBQ01000402
[OJBQ] seawater metagenome; Sea water
234
158
-
Ile2
CAT
[ENA]
¢þ
>WENV182546925
OJBQ01004186
[OJBQ] seawater metagenome; Sea water
252
328
+
Ile
GAT
[ENA]
¢þ
>WENV182546924
OJBQ01003583
[OJBQ] seawater metagenome; Sea water
272
197
-
Thr
GGT
[ENA]
¢þ
>WENV182546902
OJBQ01000497
[OJBQ] seawater metagenome; Sea water
301
375
+
Gln
TTG
[ENA]
¢þ
>WENV182546926
OJBQ01004186
[OJBQ] seawater metagenome; Sea water
346
421
+
Ala
TGC
[ENA]
¢þ
>WENV182546923
OJBQ01003583
[OJBQ] seawater metagenome; Sea water
353
279
-
Gly
TCC
[ENA]
¢þ
>WENV182546914
OJBQ01002347
[OJBQ] seawater metagenome; Sea water
354
429
+
His
GTG
[ENA]
¢þ
>WENV182546915
OJBQ01002347
[OJBQ] seawater metagenome; Sea water
437
521
+
Leu
TAG
[ENA]
¢þ
>WENV182546911
OJBQ01001896
[OJBQ] seawater metagenome; Sea water
438
363
-
Ala
TGC
[ENA]
¢þ
>WENV182546920
OJBQ01003265
[OJBQ] seawater metagenome; Sea water
443
368
-
Glu
TTC
[ENA]
¢þ
>WENV182546922
OJBQ01003583
[OJBQ] seawater metagenome; Sea water
476
392
-
Tyr
GTA
[ENA]
¢þ
>WENV182546919
OJBQ01002859
[OJBQ] seawater metagenome; Sea water
482
396
-
Leu
TAA
[ENA]
¢þ
>WENV182546916
OJBQ01002347
[OJBQ] seawater metagenome; Sea water
526
601
+
Gln
TTG
[ENA]
¢þ
>WENV182546921
OJBQ01003583
[OJBQ] seawater metagenome; Sea water
559
484
-
Thr
TGT
[ENA]
¢þ
>WENV182546910
OJBQ01001896
[OJBQ] seawater metagenome; Sea water
628
552
-
Ile
GAT
[ENA]
¢þ
>WENV182546918
OJBQ01002720
[OJBQ] seawater metagenome; Sea water
631
707
+
Arg
GCG
[ENA]
¢þ
>WENV182546917
OJBQ01002347
[OJBQ] seawater metagenome; Sea water
654
730
+
Met
CAT
[ENA]
¢þ
>WENV182546909
OJBQ01001896
[OJBQ] seawater metagenome; Sea water
868
793
-
Ala
TGC
[ENA]
¢þ
>WENV182546907
OJBQ01001163
[OJBQ] seawater metagenome; Sea water
1100
1026
-
Gln
TTG
[ENA]
¢þ
>WENV182546903
OJBQ01000914
[OJBQ] seawater metagenome; Sea water
1163
1088
-
Gln
TTG
[ENA]
¢þ
>WENV182546906
OJBQ01001163
[OJBQ] seawater metagenome; Sea water
1211
1137
-
Gln
TTG
[ENA]
¢þ
>WENV182546904
OJBQ01000978
[OJBQ] seawater metagenome; Sea water
1349
1424
+
Asn
GTT
[ENA]
¢þ
>WENV182546901
OJBQ01000452
[OJBQ] seawater metagenome; Sea water
1497
1572
+
Trp
CCA
[ENA]
¢þ
>WENV182546895
OJBQ01000278
[OJBQ] seawater metagenome; Sea water
2217
2292
+
Thr
TGT
[ENA]
¢þ
>WENV182546896
OJBQ01000278
[OJBQ] seawater metagenome; Sea water
2370
2453
+
Tyr
GTA
[ENA]
¢þ
>WENV182546897
OJBQ01000278
[OJBQ] seawater metagenome; Sea water
2530
2603
+
Gly
TCC
[ENA]
¢þ
>WENV182546898
OJBQ01000278
[OJBQ] seawater metagenome; Sea water
2648
2723
+
Thr
GGT
[ENA]
¢þ
>WENV182546894
OJBQ01000077
[OJBQ] seawater metagenome; Sea water
3419
3494
+
Trp
CCA
[ENA]
¢þ
>WENV182546892
OJBQ01000040
[OJBQ] seawater metagenome; Sea water
6901
6826
-
His
GTG
[ENA]
¢þ
>WENV182546891
OJBQ01000040
[OJBQ] seawater metagenome; Sea water
7008
6932
-
Arg
TCT
[ENA]
¢þ
>WENV182546890
OJBQ01000040
[OJBQ] seawater metagenome; Sea water
7109
7033
-
Pro
TGG
[ENA]
¢þ
>WENV182546889
OJBQ01000030
[OJBQ] seawater metagenome; Sea water
7633
7558
-
Trp
CCA
[ENA]
¢þ
>WENV182546888
OJBQ01000002
[OJBQ] seawater metagenome; Sea water
11822
11907
+
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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