This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJCD] seawater metagenome; Sea water
HIT:
54 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182551564
OJCD01002282
[OJCD] seawater metagenome; Sea water
85
10
-
Gly
TCC
[ENA]
¢þ
>WENV182551572
OJCD01003318
[OJCD] seawater metagenome; Sea water
98
174
+
Pro
GGG
[ENA]
¢þ
>WENV182551527
OJCD01000047
[OJCD] seawater metagenome; Sea water
174
100
-
Gln
TTG
[ENA]
¢þ
>WENV182551544
OJCD01000818
[OJCD] seawater metagenome; Sea water
215
290
+
Glu
TTC
[ENA]
¢þ
>WENV182551557
OJCD01001412
[OJCD] seawater metagenome; Sea water
217
141
-
Arg
ACG
[ENA]
¢þ
>WENV182551553
OJCD01000955
[OJCD] seawater metagenome; Sea water
232
156
-
Ala
TGC
[ENA]
¢þ
>WENV182551541
OJCD01000586
[OJCD] seawater metagenome; Sea water
244
325
+
Leu
TAG
[ENA]
¢þ
>WENV182551569
OJCD01002895
[OJCD] seawater metagenome; Sea water
252
177
-
Thr
TGT
[ENA]
¢þ
>WENV182551555
OJCD01001259
[OJCD] seawater metagenome; Sea water
253
166
-
Ser
GGA
[ENA]
¢þ
>WENV182551566
OJCD01002325
[OJCD] seawater metagenome; Sea water
263
348
+
Leu
GAG
[ENA]
¢þ
>WENV182551526
OJCD01000047
[OJCD] seawater metagenome; Sea water
270
181
-
Ser
ACT
[ENA]
¢þ
>WENV182551565
OJCD01002320
[OJCD] seawater metagenome; Sea water
271
186
-
Leu
TAA
[ENA]
¢þ
>WENV182551568
OJCD01002764
[OJCD] seawater metagenome; Sea water
328
400
+
Glu
CTC
[ENA]
¢þ
>WENV182551571
OJCD01003229
[OJCD] seawater metagenome; Sea water
336
262
-
His
GTG
[ENA]
¢þ
>WENV182551567
OJCD01002402
[OJCD] seawater metagenome; Sea water
338
411
+
Ile
GAT
[ENA]
¢þ
>WENV182551550
OJCD01000848
[OJCD] seawater metagenome; Sea water
342
415
+
Ile
GAT
[ENA]
¢þ
>WENV182551549
OJCD01000830
[OJCD] seawater metagenome; Sea water
349
267
-
Tyr
GTA
[ENA]
¢þ
>WENV182551525
OJCD01000047
[OJCD] seawater metagenome; Sea water
352
277
-
Asn
GTT
[ENA]
¢þ
>WENV182551545
OJCD01000818
[OJCD] seawater metagenome; Sea water
368
443
+
Gly
GCC
[ENA]
¢þ
>WENV182551552
OJCD01000955
[OJCD] seawater metagenome; Sea water
402
328
-
Ile
GAT
[ENA]
¢þ
>WENV182551551
OJCD01000848
[OJCD] seawater metagenome; Sea water
418
492
+
Ala
TGC
[ENA]
¢þ
>WENV182551559
OJCD01001778
[OJCD] seawater metagenome; Sea water
434
361
-
Gly
TCC
[ENA]
¢þ
>WENV182551548
OJCD01000830
[OJCD] seawater metagenome; Sea water
435
362
-
Gly
GCC
[ENA]
¢þ
>WENV182551546
OJCD01000818
[OJCD] seawater metagenome; Sea water
450
523
+
Cys
GCA
[ENA]
¢þ
>WENV182551570
OJCD01003103
[OJCD] seawater metagenome; Sea water
455
382
-
Lys
CTT
[ENA]
¢þ
>WENV182551562
OJCD01001931
[OJCD] seawater metagenome; Sea water
509
435
-
Gln
TTG
[ENA]
¢þ
>WENV182551563
OJCD01002211
[OJCD] seawater metagenome; Sea water
551
626
+
Val
TAC
[ENA]
¢þ
>WENV182551558
OJCD01001778
[OJCD] seawater metagenome; Sea water
566
481
-
Tyr
GTA
[ENA]
¢þ
>WENV182551560
OJCD01001826
[OJCD] seawater metagenome; Sea water
572
663
+
Ser
GCT
[ENA]
¢þ
>WENV182551547
OJCD01000830
[OJCD] seawater metagenome; Sea water
576
503
-
Gln
TTG
[ENA]
¢þ
>WENV182551561
OJCD01001931
[OJCD] seawater metagenome; Sea water
611
535
-
Met
CAT
[ENA]
¢þ
>WENV182551524
OJCD01000047
[OJCD] seawater metagenome; Sea water
616
542
-
Ile2
CAT
[ENA]
¢þ
>WENV182551542
OJCD01000760
[OJCD] seawater metagenome; Sea water
639
726
+
Ser
TGA
[ENA]
¢þ
>WENV182551531
OJCD01000102
[OJCD] seawater metagenome; Sea water
654
580
-
Thr
GGT
[ENA]
¢þ
>WENV182551523
OJCD01000047
[OJCD] seawater metagenome; Sea water
709
626
-
Leu
TAA
[ENA]
¢þ
>WENV182551556
OJCD01001373
[OJCD] seawater metagenome; Sea water
721
648
-
Gln
TTG
[ENA]
¢þ
>WENV182551530
OJCD01000102
[OJCD] seawater metagenome; Sea water
798
724
-
Gly
TCC
[ENA]
¢þ
>WENV182551522
OJCD01000047
[OJCD] seawater metagenome; Sea water
800
724
-
Arg
TCT
[ENA]
¢þ
>WENV182551554
OJCD01001089
[OJCD] seawater metagenome; Sea water
812
736
-
Asp
GTC
[ENA]
¢þ
>WENV182551543
OJCD01000808
[OJCD] seawater metagenome; Sea water
864
789
-
Val
TAC
[ENA]
¢þ
>WENV182551529
OJCD01000102
[OJCD] seawater metagenome; Sea water
888
805
-
Tyr
GTA
[ENA]
¢þ
>WENV182551534
OJCD01000169
[OJCD] seawater metagenome; Sea water
921
997
+
Arg
TCT
[ENA]
¢þ
>WENV182551528
OJCD01000102
[OJCD] seawater metagenome; Sea water
986
911
-
Thr
TGT
[ENA]
¢þ
>WENV182551533
OJCD01000126
[OJCD] seawater metagenome; Sea water
1246
1322
+
fMet
CAT
[ENA]
¢þ
>WENV182551540
OJCD01000265
[OJCD] seawater metagenome; Sea water
1271
1196
-
Thr
GGT
[ENA]
¢þ
>WENV182551539
OJCD01000265
[OJCD] seawater metagenome; Sea water
1362
1289
-
Gly
TCC
[ENA]
¢þ
>WENV182551538
OJCD01000183
[OJCD] seawater metagenome; Sea water
1387
1462
+
Ile2
CAT
[ENA]
¢þ
>WENV182551537
OJCD01000175
[OJCD] seawater metagenome; Sea water
1638
1555
-
Leu
TAG
[ENA]
¢þ
>WENV182551536
OJCD01000175
[OJCD] seawater metagenome; Sea water
1720
1647
-
Gly
TCC
[ENA]
¢þ
>WENV182551532
OJCD01000118
[OJCD] seawater metagenome; Sea water
1739
1814
+
Phe
GAA
[ENA]
¢þ
>WENV182551535
OJCD01000175
[OJCD] seawater metagenome; Sea water
1900
1825
-
Thr
TGT
[ENA]
¢þ
>WENV182551521
OJCD01000040
[OJCD] seawater metagenome; Sea water
3274
3199
-
Ala
TGC
[ENA]
¢þ
>WENV182551520
OJCD01000040
[OJCD] seawater metagenome; Sea water
3373
3296
-
Ile
GAT
[ENA]
¢þ
>WENV182551519
OJCD01000017
[OJCD] seawater metagenome; Sea water
3768
3695
-
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK