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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJCN] seawater metagenome; Sea water
HIT:
70 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182552674
OJCN01004860
[OJCN] seawater metagenome; Sea water
11
86
+
Lys
TTT
[ENA]
¢þ
>WENV182552677
OJCN01006191
[OJCN] seawater metagenome; Sea water
88
162
+
Met
CAT
[ENA]
¢þ
>WENV182552689
OJCN01007578
[OJCN] seawater metagenome; Sea water
94
166
+
Cys
GCA
[ENA]
¢þ
>WENV182552679
OJCN01006247
[OJCN] seawater metagenome; Sea water
103
175
+
Phe
GAA
[ENA]
¢þ
>WENV182552628
OJCN01000027
[OJCN] seawater metagenome; Sea water
108
183
+
Ala
TGC
[ENA]
¢þ
>WENV182552697
OJCN01008445
[OJCN] seawater metagenome; Sea water
111
39
-
Arg
TCG
[ENA]
¢þ
>WENV182552657
OJCN01001165
[OJCN] seawater metagenome; Sea water
114
38
-
fMet
CAT
[ENA]
¢þ
>WENV182552694
OJCN01008097
[OJCN] seawater metagenome; Sea water
117
207
+
Ser
TGA
[ENA]
¢þ
>WENV182552645
OJCN01000563
[OJCN] seawater metagenome; Sea water
138
66
-
Thr
GGT
[ENA]
¢þ
>WENV182552665
OJCN01003367
[OJCN] seawater metagenome; Sea water
149
74
-
Val
TAC
[ENA]
¢þ
>WENV182552670
OJCN01004157
[OJCN] seawater metagenome; Sea water
167
93
-
Glu
CTC
[ENA]
¢þ
>WENV182552690
OJCN01007767
[OJCN] seawater metagenome; Sea water
182
271
+
Ser
CGA
[ENA]
¢þ
>WENV182552683
OJCN01007154
[OJCN] seawater metagenome; Sea water
187
263
+
Arg
ACG
[ENA]
¢þ
>WENV182552678
OJCN01006191
[OJCN] seawater metagenome; Sea water
191
264
+
Lys
CTT
[ENA]
¢þ
>WENV182552675
OJCN01005098
[OJCN] seawater metagenome; Sea water
202
272
+
Gly
GCC
[ENA]
¢þ
>WENV182552696
OJCN01008201
[OJCN] seawater metagenome; Sea water
204
130
-
Gly
GCC
[ENA]
¢þ
>WENV182552681
OJCN01006778
[OJCN] seawater metagenome; Sea water
214
287
+
Arg
TCT
[ENA]
¢þ
>WENV182552644
OJCN01000563
[OJCN] seawater metagenome; Sea water
229
157
-
Gly
GCC
[ENA]
¢þ
>WENV182552692
OJCN01007852
[OJCN] seawater metagenome; Sea water
243
170
-
Gly
TCC
[ENA]
¢þ
>WENV182552688
OJCN01007496
[OJCN] seawater metagenome; Sea water
249
176
-
Arg
CCG
[ENA]
¢þ
>WENV182552668
OJCN01004112
[OJCN] seawater metagenome; Sea water
294
222
-
Val
GAC
[ENA]
¢þ
>WENV182552631
OJCN01000104
[OJCN] seawater metagenome; Sea water
296
379
+
Tyr
GTA
[ENA]
¢þ
>WENV182552641
OJCN01000462
[OJCN] seawater metagenome; Sea water
305
231
-
Asp
GTC
[ENA]
¢þ
>WENV182552686
OJCN01007427
[OJCN] seawater metagenome; Sea water
305
380
+
Glu
TTC
[ENA]
¢þ
>WENV182552659
OJCN01001784
[OJCN] seawater metagenome; Sea water
308
224
-
Ser
CGA
[ENA]
¢þ
>WENV182552695
OJCN01008201
[OJCN] seawater metagenome; Sea water
309
234
-
Glu
TTC
[ENA]
¢þ
>WENV182552684
OJCN01007229
[OJCN] seawater metagenome; Sea water
314
388
+
Glu
TTC
[ENA]
¢þ
>WENV182552676
OJCN01006032
[OJCN] seawater metagenome; Sea water
347
431
+
Leu
CAA
[ENA]
¢þ
>WENV182552667
OJCN01004100
[OJCN] seawater metagenome; Sea water
351
267
-
Leu
GAG
[ENA]
¢þ
>WENV182552640
OJCN01000439
[OJCN] seawater metagenome; Sea water
363
438
+
Thr
CGT
[ENA]
¢þ
>WENV182552643
OJCN01000563
[OJCN] seawater metagenome; Sea water
369
443
+
Val
CAC
[ENA]
¢þ
>WENV182552691
OJCN01007852
[OJCN] seawater metagenome; Sea water
375
290
-
Tyr
GTA
[ENA]
¢þ
>WENV182552666
OJCN01003887
[OJCN] seawater metagenome; Sea water
381
298
-
Ser
TGA
[ENA]
¢þ
>WENV182552687
OJCN01007427
[OJCN] seawater metagenome; Sea water
390
465
+
Gly
GCC
[ENA]
¢þ
>WENV182552682
OJCN01006877
[OJCN] seawater metagenome; Sea water
393
477
+
Leu
TAA
[ENA]
¢þ
>WENV182552672
OJCN01004754
[OJCN] seawater metagenome; Sea water
406
480
+
Arg
ACG
[ENA]
¢þ
>WENV182552660
OJCN01001826
[OJCN] seawater metagenome; Sea water
411
338
-
Gly
CCC
[ENA]
¢þ
>WENV182552664
OJCN01002154
[OJCN] seawater metagenome; Sea water
414
329
-
Leu
CAA
[ENA]
¢þ
>WENV182552669
OJCN01004140
[OJCN] seawater metagenome; Sea water
414
341
-
Gly
CCC
[ENA]
¢þ
>WENV182552649
OJCN01000964
[OJCN] seawater metagenome; Sea water
446
538
+
Ser
GCT
[ENA]
¢þ
>WENV182552680
OJCN01006254
[OJCN] seawater metagenome; Sea water
449
534
+
Leu
GAG
[ENA]
¢þ
>WENV182552632
OJCN01000104
[OJCN] seawater metagenome; Sea water
450
523
+
Gly
TCC
[ENA]
¢þ
>WENV182552693
OJCN01007992
[OJCN] seawater metagenome; Sea water
464
389
-
Thr
TGT
[ENA]
¢þ
>WENV182552653
OJCN01001007
[OJCN] seawater metagenome; Sea water
498
572
+
Val
TAC
[ENA]
¢þ
>WENV182552671
OJCN01004356
[OJCN] seawater metagenome; Sea water
510
582
+
Ala
CGC
[ENA]
¢þ
>WENV182552685
OJCN01007351
[OJCN] seawater metagenome; Sea water
513
418
-
SeC
TCA
[ENA]
¢þ
>WENV182552673
OJCN01004845
[OJCN] seawater metagenome; Sea water
538
612
+
Arg
TCG
[ENA]
¢þ
>WENV182552650
OJCN01000964
[OJCN] seawater metagenome; Sea water
547
623
+
Arg
ACG
[ENA]
¢þ
>WENV182552633
OJCN01000104
[OJCN] seawater metagenome; Sea water
549
624
+
Thr
GGT
[ENA]
¢þ
>WENV182552662
OJCN01001928
[OJCN] seawater metagenome; Sea water
553
628
+
Val
TAC
[ENA]
¢þ
>WENV182552647
OJCN01000564
[OJCN] seawater metagenome; Sea water
576
502
-
Pro
TGG
[ENA]
¢þ
>WENV182552658
OJCN01001625
[OJCN] seawater metagenome; Sea water
599
526
-
Arg
CCG
[ENA]
¢þ
>WENV182552630
OJCN01000034
[OJCN] seawater metagenome; Sea water
613
541
-
Ile2
CAT
[ENA]
¢þ
>WENV182552661
OJCN01001851
[OJCN] seawater metagenome; Sea water
623
699
+
Val
GAC
[ENA]
¢þ
>WENV182552663
OJCN01001928
[OJCN] seawater metagenome; Sea water
683
759
+
Asp
GTC
[ENA]
¢þ
>WENV182552651
OJCN01000971
[OJCN] seawater metagenome; Sea water
716
642
-
Thr
GGT
[ENA]
¢þ
>WENV182552646
OJCN01000564
[OJCN] seawater metagenome; Sea water
723
794
+
Gly
TCC
[ENA]
¢þ
>WENV182552652
OJCN01000972
[OJCN] seawater metagenome; Sea water
795
868
+
Trp
CCA
[ENA]
¢þ
>WENV182552655
OJCN01001067
[OJCN] seawater metagenome; Sea water
903
831
-
Gln
TTG
[ENA]
¢þ
>WENV182552656
OJCN01001122
[OJCN] seawater metagenome; Sea water
970
1052
+
Leu
TAG
[ENA]
¢þ
>WENV182552654
OJCN01001063
[OJCN] seawater metagenome; Sea water
976
1050
+
Phe
GAA
[ENA]
¢þ
>WENV182552648
OJCN01000859
[OJCN] seawater metagenome; Sea water
1034
1110
+
Arg
TCT
[ENA]
¢þ
>WENV182552642
OJCN01000529
[OJCN] seawater metagenome; Sea water
1105
1021
-
Leu
GAG
[ENA]
¢þ
>WENV182552636
OJCN01000157
[OJCN] seawater metagenome; Sea water
1386
1462
+
Ile
GAT
[ENA]
¢þ
>WENV182552637
OJCN01000157
[OJCN] seawater metagenome; Sea water
1469
1544
+
Ala
TGC
[ENA]
¢þ
>WENV182552635
OJCN01000153
[OJCN] seawater metagenome; Sea water
1473
1544
+
Cys
GCA
[ENA]
¢þ
>WENV182552638
OJCN01000197
[OJCN] seawater metagenome; Sea water
1534
1607
+
Glu
TTC
[ENA]
¢þ
>WENV182552639
OJCN01000197
[OJCN] seawater metagenome; Sea water
1626
1700
+
Asp
GTC
[ENA]
¢þ
>WENV182552634
OJCN01000104
[OJCN] seawater metagenome; Sea water
2103
2178
+
Trp
CCA
[ENA]
¢þ
>WENV182552629
OJCN01000033
[OJCN] seawater metagenome; Sea water
2826
2736
-
Ser
GCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK