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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJCO] seawater metagenome; Sea water
HIT:
51 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182552721
OJCO01000422
[OJCO] seawater metagenome; Sea water
56
132
+
Arg
CCT
[ENA]
¢þ
>WENV182552733
OJCO01001464
[OJCO] seawater metagenome; Sea water
78
3
-
Gly
GCC
[ENA]
¢þ
>WENV182552747
OJCO01003935
[OJCO] seawater metagenome; Sea water
80
155
+
Thr
GGT
[ENA]
¢þ
>WENV182552726
OJCO01000952
[OJCO] seawater metagenome; Sea water
91
16
-
Asn
GTT
[ENA]
¢þ
>WENV182552728
OJCO01001031
[OJCO] seawater metagenome; Sea water
124
49
-
Asn
GTT
[ENA]
¢þ
>WENV182552736
OJCO01001906
[OJCO] seawater metagenome; Sea water
130
55
-
Thr
CGT
[ENA]
¢þ
>WENV182552722
OJCO01000444
[OJCO] seawater metagenome; Sea water
137
61
-
Ile2
CAT
[ENA]
¢þ
>WENV182552725
OJCO01000851
[OJCO] seawater metagenome; Sea water
151
76
-
Val
TAC
[ENA]
¢þ
>WENV182552699
OJCO01000006
[OJCO] seawater metagenome; Sea water
170
253
+
Tyr
GTA
[ENA]
¢þ
>WENV182552742
OJCO01002570
[OJCO] seawater metagenome; Sea water
198
124
-
Thr
GGT
[ENA]
¢þ
>WENV182552698
OJCO01000003
[OJCO] seawater metagenome; Sea water
199
123
-
Met
CAT
[ENA]
¢þ
>WENV182552706
OJCO01000014
[OJCO] seawater metagenome; Sea water
210
296
+
Leu
TAA
[ENA]
¢þ
>WENV182552720
OJCO01000377
[OJCO] seawater metagenome; Sea water
214
138
-
Ile2
CAT
[ENA]
¢þ
>WENV182552741
OJCO01002570
[OJCO] seawater metagenome; Sea water
288
215
-
Gly
TCC
[ENA]
¢þ
>WENV182552746
OJCO01002645
[OJCO] seawater metagenome; Sea water
296
224
-
Thr
GGT
[ENA]
¢þ
>WENV182552748
OJCO01004245
[OJCO] seawater metagenome; Sea water
317
391
+
Gln
TTG
[ENA]
¢þ
>WENV182552700
OJCO01000006
[OJCO] seawater metagenome; Sea water
330
403
+
Gly
TCC
[ENA]
¢þ
>WENV182552719
OJCO01000344
[OJCO] seawater metagenome; Sea water
347
262
-
Leu
GAG
[ENA]
¢þ
>WENV182552740
OJCO01002570
[OJCO] seawater metagenome; Sea water
396
312
-
Tyr
GTA
[ENA]
¢þ
>WENV182552737
OJCO01002219
[OJCO] seawater metagenome; Sea water
435
508
+
Lys
CTT
[ENA]
¢þ
>WENV182552701
OJCO01000006
[OJCO] seawater metagenome; Sea water
448
523
+
Thr
GGT
[ENA]
¢þ
>WENV182552745
OJCO01002645
[OJCO] seawater metagenome; Sea water
484
411
-
Gly
TCC
[ENA]
¢þ
>WENV182552723
OJCO01000716
[OJCO] seawater metagenome; Sea water
503
578
+
Thr
CGT
[ENA]
¢þ
>WENV182552729
OJCO01001172
[OJCO] seawater metagenome; Sea water
504
428
-
Pro
GGG
[ENA]
¢þ
>WENV182552738
OJCO01002406
[OJCO] seawater metagenome; Sea water
528
456
-
Met
CAT
[ENA]
¢þ
>WENV182552744
OJCO01002645
[OJCO] seawater metagenome; Sea water
582
500
-
Tyr
GTA
[ENA]
¢þ
>WENV182552717
OJCO01000073
[OJCO] seawater metagenome; Sea water
660
736
+
Arg
CCG
[ENA]
¢þ
>WENV182552743
OJCO01002645
[OJCO] seawater metagenome; Sea water
699
625
-
Thr
TGT
[ENA]
¢þ
>WENV182552730
OJCO01001319
[OJCO] seawater metagenome; Sea water
727
803
+
Pro
TGG
[ENA]
¢þ
>WENV182552739
OJCO01002466
[OJCO] seawater metagenome; Sea water
749
663
-
Leu
CAG
[ENA]
¢þ
>WENV182552731
OJCO01001319
[OJCO] seawater metagenome; Sea water
854
930
+
Arg
TCT
[ENA]
¢þ
>WENV182552735
OJCO01001776
[OJCO] seawater metagenome; Sea water
964
889
-
Thr
GGT
[ENA]
¢þ
>WENV182552732
OJCO01001319
[OJCO] seawater metagenome; Sea water
1025
1100
+
His
GTG
[ENA]
¢þ
>WENV182552734
OJCO01001518
[OJCO] seawater metagenome; Sea water
1078
1003
-
Trp
CCA
[ENA]
¢þ
>WENV182552727
OJCO01001027
[OJCO] seawater metagenome; Sea water
1124
1200
+
Pro
GGG
[ENA]
¢þ
>WENV182552703
OJCO01000013
[OJCO] seawater metagenome; Sea water
1191
1267
+
Pro
TGG
[ENA]
¢þ
>WENV182552704
OJCO01000013
[OJCO] seawater metagenome; Sea water
1292
1368
+
Arg
TCT
[ENA]
¢þ
>WENV182552724
OJCO01000794
[OJCO] seawater metagenome; Sea water
1312
1237
-
Gln
TTG
[ENA]
¢þ
>WENV182552705
OJCO01000013
[OJCO] seawater metagenome; Sea water
1399
1474
+
His
GTG
[ENA]
¢þ
>WENV182552702
OJCO01000006
[OJCO] seawater metagenome; Sea water
1937
2012
+
Trp
CCA
[ENA]
¢þ
>WENV182552718
OJCO01000290
[OJCO] seawater metagenome; Sea water
2574
2663
+
Ser
GCT
[ENA]
¢þ
>WENV182552716
OJCO01000023
[OJCO] seawater metagenome; Sea water
3866
3794
-
Glu
TTC
[ENA]
¢þ
>WENV182552715
OJCO01000019
[OJCO] seawater metagenome; Sea water
5114
5033
-
Ser
TGA
[ENA]
¢þ
>WENV182552714
OJCO01000019
[OJCO] seawater metagenome; Sea water
5260
5190
-
Trp
CCA
[ENA]
¢þ
>WENV182552713
OJCO01000019
[OJCO] seawater metagenome; Sea water
5369
5295
-
Gln
TTG
[ENA]
¢þ
>WENV182552712
OJCO01000019
[OJCO] seawater metagenome; Sea water
5447
5375
-
Ile
GAT
[ENA]
¢þ
>WENV182552711
OJCO01000019
[OJCO] seawater metagenome; Sea water
5524
5454
-
Met
CAT
[ENA]
¢þ
>WENV182552710
OJCO01000019
[OJCO] seawater metagenome; Sea water
5599
5527
-
Lys
TTT
[ENA]
¢þ
>WENV182552709
OJCO01000019
[OJCO] seawater metagenome; Sea water
5780
5699
-
Leu
TAA
[ENA]
¢þ
>WENV182552708
OJCO01000019
[OJCO] seawater metagenome; Sea water
5869
5797
-
Cys
GCA
[ENA]
¢þ
>WENV182552707
OJCO01000019
[OJCO] seawater metagenome; Sea water
5949
5876
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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