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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJCP] seawater metagenome; Sea water
HIT:
26 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182552750
OJCP01000006
[OJCP] seawater metagenome; Sea water
113
188
+
Thr
GGT
[ENA]
¢þ
>WENV182552755
OJCP01000299
[OJCP] seawater metagenome; Sea water
115
42
-
Asn
GTT
[ENA]
¢þ
>WENV182552763
OJCP01000819
[OJCP] seawater metagenome; Sea water
130
202
+
Thr
GGT
[ENA]
¢þ
>WENV182552757
OJCP01000304
[OJCP] seawater metagenome; Sea water
132
56
-
Arg
ACG
[ENA]
¢þ
>WENV182552770
OJCP01002386
[OJCP] seawater metagenome; Sea water
172
88
-
Tyr
GTA
[ENA]
¢þ
>WENV182552774
OJCP01003392
[OJCP] seawater metagenome; Sea water
254
179
-
His
GTG
[ENA]
¢þ
>WENV182552756
OJCP01000304
[OJCP] seawater metagenome; Sea water
285
196
-
Ser
GCT
[ENA]
¢þ
>WENV182552769
OJCP01002386
[OJCP] seawater metagenome; Sea water
287
212
-
Thr
TGT
[ENA]
¢þ
>WENV182552752
OJCP01000251
[OJCP] seawater metagenome; Sea water
298
222
-
Ile2
CAT
[ENA]
¢þ
>WENV182552759
OJCP01000571
[OJCP] seawater metagenome; Sea water
311
225
-
Leu
TAA
[ENA]
¢þ
>WENV182552767
OJCP01001408
[OJCP] seawater metagenome; Sea water
395
310
-
Leu
GAG
[ENA]
¢þ
>WENV182552773
OJCP01003392
[OJCP] seawater metagenome; Sea water
411
335
-
Arg
TCT
[ENA]
¢þ
>WENV182552772
OJCP01003392
[OJCP] seawater metagenome; Sea water
521
445
-
Pro
TGG
[ENA]
¢þ
>WENV182552771
OJCP01002862
[OJCP] seawater metagenome; Sea water
610
684
+
Arg
ACG
[ENA]
¢þ
>WENV182552768
OJCP01001530
[OJCP] seawater metagenome; Sea water
678
754
+
Arg
CCG
[ENA]
¢þ
>WENV182552760
OJCP01000626
[OJCP] seawater metagenome; Sea water
743
818
+
Gly
GCC
[ENA]
¢þ
>WENV182552761
OJCP01000626
[OJCP] seawater metagenome; Sea water
879
952
+
Cys
GCA
[ENA]
¢þ
>WENV182552766
OJCP01001356
[OJCP] seawater metagenome; Sea water
1025
1100
+
Asn
GTT
[ENA]
¢þ
>WENV182552764
OJCP01000989
[OJCP] seawater metagenome; Sea water
1052
976
-
Met
CAT
[ENA]
¢þ
>WENV182552765
OJCP01001040
[OJCP] seawater metagenome; Sea water
1058
1134
+
Val
GAC
[ENA]
¢þ
>WENV182552753
OJCP01000267
[OJCP] seawater metagenome; Sea water
1070
994
-
Asp
GTC
[ENA]
¢þ
>WENV182552762
OJCP01000787
[OJCP] seawater metagenome; Sea water
1165
1090
-
Gln
TTG
[ENA]
¢þ
>WENV182552758
OJCP01000413
[OJCP] seawater metagenome; Sea water
1323
1250
-
Gly
CCC
[ENA]
¢þ
>WENV182552751
OJCP01000006
[OJCP] seawater metagenome; Sea water
1602
1677
+
Trp
CCA
[ENA]
¢þ
>WENV182552754
OJCP01000285
[OJCP] seawater metagenome; Sea water
2036
1962
-
Gln
TTG
[ENA]
¢þ
>WENV182552749
OJCP01000004
[OJCP] seawater metagenome; Sea water
3192
3117
-
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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