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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJCV] seawater metagenome; Sea water
HIT:
38 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182554580
OJCV01003730
[OJCV] seawater metagenome; Sea water
49
124
+
Gly
GCC
[ENA]
¢þ
>WENV182554570
OJCV01002947
[OJCV] seawater metagenome; Sea water
60
138
+
Met
CAT
[ENA]
¢þ
>WENV182554574
OJCV01003389
[OJCV] seawater metagenome; Sea water
93
166
+
Cys
GCA
[ENA]
¢þ
>WENV182554545
OJCV01000008
[OJCV] seawater metagenome; Sea water
127
203
+
fMet
CAT
[ENA]
¢þ
>WENV182554568
OJCV01002437
[OJCV] seawater metagenome; Sea water
179
104
-
Val
TAC
[ENA]
¢þ
>WENV182554581
OJCV01003730
[OJCV] seawater metagenome; Sea water
179
252
+
Cys
GCA
[ENA]
¢þ
>WENV182554579
OJCV01003719
[OJCV] seawater metagenome; Sea water
205
129
-
Ile
GAT
[ENA]
¢þ
>WENV182554575
OJCV01003389
[OJCV] seawater metagenome; Sea water
217
302
+
Leu
TAA
[ENA]
¢þ
>WENV182554572
OJCV01003214
[OJCV] seawater metagenome; Sea water
223
299
+
Asp
GTC
[ENA]
¢þ
>WENV182554571
OJCV01002947
[OJCV] seawater metagenome; Sea water
255
331
+
Ile
GAT
[ENA]
¢þ
>WENV182554564
OJCV01001493
[OJCV] seawater metagenome; Sea water
276
202
-
Ile
GAT
[ENA]
¢þ
>WENV182554567
OJCV01002407
[OJCV] seawater metagenome; Sea water
286
211
-
Thr
GGT
[ENA]
¢þ
>WENV182554561
OJCV01000808
[OJCV] seawater metagenome; Sea water
347
422
+
Trp
CCA
[ENA]
¢þ
>WENV182554560
OJCV01000776
[OJCV] seawater metagenome; Sea water
359
434
+
Gln
TTG
[ENA]
¢þ
>WENV182554578
OJCV01003719
[OJCV] seawater metagenome; Sea water
381
306
-
Ala
TGC
[ENA]
¢þ
>WENV182554582
OJCV01003730
[OJCV] seawater metagenome; Sea water
386
472
+
Leu
TAA
[ENA]
¢þ
>WENV182554566
OJCV01002407
[OJCV] seawater metagenome; Sea water
404
331
-
Gly
TCC
[ENA]
¢þ
>WENV182554577
OJCV01003611
[OJCV] seawater metagenome; Sea water
406
331
-
Ala
TGC
[ENA]
¢þ
>WENV182554573
OJCV01003214
[OJCV] seawater metagenome; Sea water
452
528
+
Lys
TTT
[ENA]
¢þ
>WENV182554576
OJCV01003611
[OJCV] seawater metagenome; Sea water
500
424
-
Ile
GAT
[ENA]
¢þ
>WENV182554565
OJCV01002407
[OJCV] seawater metagenome; Sea water
566
483
-
Tyr
GTA
[ENA]
¢þ
>WENV182554569
OJCV01002606
[OJCV] seawater metagenome; Sea water
576
651
+
Phe
GAA
[ENA]
¢þ
>WENV182554549
OJCV01000058
[OJCV] seawater metagenome; Sea water
604
529
-
Trp
CCA
[ENA]
¢þ
>WENV182554563
OJCV01001126
[OJCV] seawater metagenome; Sea water
880
804
-
Pro
CGG
[ENA]
¢þ
>WENV182554546
OJCV01000009
[OJCV] seawater metagenome; Sea water
1143
1218
+
Trp
CCA
[ENA]
¢þ
>WENV182554559
OJCV01000630
[OJCV] seawater metagenome; Sea water
1195
1280
+
Leu
GAG
[ENA]
¢þ
>WENV182554562
OJCV01000862
[OJCV] seawater metagenome; Sea water
1379
1454
+
Asn
GTT
[ENA]
¢þ
>WENV182554557
OJCV01000594
[OJCV] seawater metagenome; Sea water
1552
1635
+
Tyr
GTA
[ENA]
¢þ
>WENV182554558
OJCV01000594
[OJCV] seawater metagenome; Sea water
1715
1785
+
Gly
TCC
[ENA]
¢þ
>WENV182554554
OJCV01000431
[OJCV] seawater metagenome; Sea water
1720
1810
+
Ser
GCT
[ENA]
¢þ
>WENV182554555
OJCV01000431
[OJCV] seawater metagenome; Sea water
1894
1970
+
Arg
ACG
[ENA]
¢þ
>WENV182554556
OJCV01000431
[OJCV] seawater metagenome; Sea water
2015
2091
+
Arg
ACG
[ENA]
¢þ
>WENV182554553
OJCV01000391
[OJCV] seawater metagenome; Sea water
2042
1968
-
Gln
TTG
[ENA]
¢þ
>WENV182554547
OJCV01000015
[OJCV] seawater metagenome; Sea water
2116
2040
-
Asp
GTC
[ENA]
¢þ
>WENV182554552
OJCV01000359
[OJCV] seawater metagenome; Sea water
2205
2294
+
Ser
GGA
[ENA]
¢þ
>WENV182554551
OJCV01000257
[OJCV] seawater metagenome; Sea water
2476
2561
+
Leu
GAG
[ENA]
¢þ
>WENV182554550
OJCV01000131
[OJCV] seawater metagenome; Sea water
2835
2911
+
Asp
GTC
[ENA]
¢þ
>WENV182554548
OJCV01000032
[OJCV] seawater metagenome; Sea water
5845
5930
+
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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