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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJCX] seawater metagenome; Sea water
HIT:
71 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182554880
OJCX01000804
[OJCX] seawater metagenome; Sea water
27
111
+
Tyr
GTA
[ENA]
¢þ
>WENV182554919
OJCX01009184
[OJCX] seawater metagenome; Sea water
49
124
+
Phe
GAA
[ENA]
¢þ
>WENV182554918
OJCX01008306
[OJCX] seawater metagenome; Sea water
50
124
+
Lys
TTT
[ENA]
¢þ
>WENV182554874
OJCX01000713
[OJCX] seawater metagenome; Sea water
61
144
+
Tyr
GTA
[ENA]
¢þ
>WENV182554865
OJCX01000309
[OJCX] seawater metagenome; Sea water
66
142
+
Val
GAC
[ENA]
¢þ
>WENV182554877
OJCX01000742
[OJCX] seawater metagenome; Sea water
83
159
+
Pro
TGG
[ENA]
¢þ
>WENV182554902
OJCX01002986
[OJCX] seawater metagenome; Sea water
88
162
+
Ile
GAT
[ENA]
¢þ
>WENV182554909
OJCX01005583
[OJCX] seawater metagenome; Sea water
111
36
-
Arg
ACG
[ENA]
¢þ
>WENV182554890
OJCX01001490
[OJCX] seawater metagenome; Sea water
125
50
-
Asn
GTT
[ENA]
¢þ
>WENV182554905
OJCX01004661
[OJCX] seawater metagenome; Sea water
135
49
-
Ser
GGA
[ENA]
¢þ
>WENV182554899
OJCX01002394
[OJCX] seawater metagenome; Sea water
136
212
+
Pro
TGG
[ENA]
¢þ
>WENV182554908
OJCX01005429
[OJCX] seawater metagenome; Sea water
145
220
+
Ala
TGC
[ENA]
¢þ
>WENV182554852
OJCX01000007
[OJCX] seawater metagenome; Sea water
170
253
+
Tyr
GTA
[ENA]
¢þ
>WENV182554881
OJCX01000804
[OJCX] seawater metagenome; Sea water
179
252
+
Gly
TCC
[ENA]
¢þ
>WENV182554875
OJCX01000713
[OJCX] seawater metagenome; Sea water
180
253
+
Gly
TCC
[ENA]
¢þ
>WENV182554903
OJCX01002986
[OJCX] seawater metagenome; Sea water
181
255
+
Ala
TGC
[ENA]
¢þ
>WENV182554878
OJCX01000742
[OJCX] seawater metagenome; Sea water
186
262
+
Arg
TCT
[ENA]
¢þ
>WENV182554895
OJCX01001909
[OJCX] seawater metagenome; Sea water
187
98
-
Ser
GCT
[ENA]
¢þ
>WENV182554884
OJCX01000938
[OJCX] seawater metagenome; Sea water
222
137
-
Leu
GAG
[ENA]
¢þ
>WENV182554900
OJCX01002394
[OJCX] seawater metagenome; Sea water
231
306
+
His
GTG
[ENA]
¢þ
>WENV182554920
OJCX01009184
[OJCX] seawater metagenome; Sea water
238
313
+
Thr
TGT
[ENA]
¢þ
>WENV182554860
OJCX01000213
[OJCX] seawater metagenome; Sea water
282
356
+
Gln
TTG
[ENA]
¢þ
>WENV182554879
OJCX01000742
[OJCX] seawater metagenome; Sea water
295
370
+
His
GTG
[ENA]
¢þ
>WENV182554894
OJCX01001841
[OJCX] seawater metagenome; Sea water
302
376
+
Gln
TTG
[ENA]
¢þ
>WENV182554913
OJCX01007127
[OJCX] seawater metagenome; Sea water
326
252
-
Gln
TTG
[ENA]
¢þ
>WENV182554904
OJCX01003714
[OJCX] seawater metagenome; Sea water
329
244
-
Leu
GAG
[ENA]
¢þ
>WENV182554853
OJCX01000007
[OJCX] seawater metagenome; Sea water
332
405
+
Gly
TCC
[ENA]
¢þ
>WENV182554921
OJCX01009184
[OJCX] seawater metagenome; Sea water
349
433
+
Tyr
GTA
[ENA]
¢þ
>WENV182554889
OJCX01001330
[OJCX] seawater metagenome; Sea water
357
432
+
Gln
TTG
[ENA]
¢þ
>WENV182554916
OJCX01007230
[OJCX] seawater metagenome; Sea water
376
301
-
Thr
GGT
[ENA]
¢þ
>WENV182554917
OJCX01007890
[OJCX] seawater metagenome; Sea water
411
335
-
Ile2
CAT
[ENA]
¢þ
>WENV182554871
OJCX01000558
[OJCX] seawater metagenome; Sea water
421
496
+
Thr
GGT
[ENA]
¢þ
>WENV182554876
OJCX01000713
[OJCX] seawater metagenome; Sea water
426
500
+
Thr
GGT
[ENA]
¢þ
>WENV182554854
OJCX01000007
[OJCX] seawater metagenome; Sea water
450
525
+
Thr
GGT
[ENA]
¢þ
>WENV182554915
OJCX01007230
[OJCX] seawater metagenome; Sea water
458
385
-
Gly
TCC
[ENA]
¢þ
>WENV182554911
OJCX01005955
[OJCX] seawater metagenome; Sea water
504
429
-
Thr
GGT
[ENA]
¢þ
>WENV182554912
OJCX01006627
[OJCX] seawater metagenome; Sea water
580
494
-
Leu
CAA
[ENA]
¢þ
>WENV182554914
OJCX01007230
[OJCX] seawater metagenome; Sea water
584
501
-
Tyr
GTA
[ENA]
¢þ
>WENV182554882
OJCX01000843
[OJCX] seawater metagenome; Sea water
587
514
-
Trp
CCA
[ENA]
¢þ
>WENV182554910
OJCX01005955
[OJCX] seawater metagenome; Sea water
597
524
-
Gly
TCC
[ENA]
¢þ
>WENV182554907
OJCX01005132
[OJCX] seawater metagenome; Sea water
597
683
+
Leu
CAA
[ENA]
¢þ
>WENV182554869
OJCX01000389
[OJCX] seawater metagenome; Sea water
609
525
-
Leu
TAA
[ENA]
¢þ
>WENV182554906
OJCX01005016
[OJCX] seawater metagenome; Sea water
728
653
-
Ala
TGC
[ENA]
¢þ
>WENV182554868
OJCX01000389
[OJCX] seawater metagenome; Sea water
736
663
-
Cys
GCA
[ENA]
¢þ
>WENV182554858
OJCX01000081
[OJCX] seawater metagenome; Sea water
776
701
-
Ala
TGC
[ENA]
¢þ
>WENV182554898
OJCX01002160
[OJCX] seawater metagenome; Sea water
856
783
-
Trp
CCA
[ENA]
¢þ
>WENV182554897
OJCX01002052
[OJCX] seawater metagenome; Sea water
939
864
-
Gln
TTG
[ENA]
¢þ
>WENV182554857
OJCX01000081
[OJCX] seawater metagenome; Sea water
949
873
-
Ile
GAT
[ENA]
¢þ
>WENV182554901
OJCX01002673
[OJCX] seawater metagenome; Sea water
959
1046
+
Ser
GCT
[ENA]
¢þ
>WENV182554893
OJCX01001792
[OJCX] seawater metagenome; Sea water
1037
962
-
Thr
GGT
[ENA]
¢þ
>WENV182554896
OJCX01001914
[OJCX] seawater metagenome; Sea water
1077
1001
-
Arg
TCT
[ENA]
¢þ
>WENV182554864
OJCX01000249
[OJCX] seawater metagenome; Sea water
1099
1174
+
Trp
CCA
[ENA]
¢þ
>WENV182554892
OJCX01001792
[OJCX] seawater metagenome; Sea water
1150
1077
-
Gly
TCC
[ENA]
¢þ
>WENV182554863
OJCX01000223
[OJCX] seawater metagenome; Sea water
1238
1163
-
Trp
CCA
[ENA]
¢þ
>WENV182554891
OJCX01001792
[OJCX] seawater metagenome; Sea water
1272
1189
-
Tyr
GTA
[ENA]
¢þ
>WENV182554888
OJCX01001079
[OJCX] seawater metagenome; Sea water
1331
1256
-
Thr
GGT
[ENA]
¢þ
>WENV182554887
OJCX01001079
[OJCX] seawater metagenome; Sea water
1412
1338
-
Gly
TCC
[ENA]
¢þ
>WENV182554886
OJCX01001079
[OJCX] seawater metagenome; Sea water
1535
1451
-
Tyr
GTA
[ENA]
¢þ
>WENV182554883
OJCX01000868
[OJCX] seawater metagenome; Sea water
1586
1661
+
Glu
TTC
[ENA]
¢þ
>WENV182554885
OJCX01001079
[OJCX] seawater metagenome; Sea water
1618
1543
-
Thr
TGT
[ENA]
¢þ
>WENV182554872
OJCX01000558
[OJCX] seawater metagenome; Sea water
1800
1875
+
Trp
CCA
[ENA]
¢þ
>WENV182554873
OJCX01000558
[OJCX] seawater metagenome; Sea water
1898
1985
+
Ser
TGA
[ENA]
¢þ
>WENV182554855
OJCX01000007
[OJCX] seawater metagenome; Sea water
1939
2014
+
Trp
CCA
[ENA]
¢þ
>WENV182554870
OJCX01000497
[OJCX] seawater metagenome; Sea water
2160
2236
+
Ile2
CAT
[ENA]
¢þ
>WENV182554856
OJCX01000062
[OJCX] seawater metagenome; Sea water
2180
2104
-
Asp
GTC
[ENA]
¢þ
>WENV182554867
OJCX01000389
[OJCX] seawater metagenome; Sea water
2407
2332
-
Gly
GCC
[ENA]
¢þ
>WENV182554866
OJCX01000338
[OJCX] seawater metagenome; Sea water
2493
2568
+
Phe
GAA
[ENA]
¢þ
>WENV182554862
OJCX01000223
[OJCX] seawater metagenome; Sea water
2688
2614
-
Thr
GGT
[ENA]
¢þ
>WENV182554861
OJCX01000223
[OJCX] seawater metagenome; Sea water
2847
2773
-
Gly
TCC
[ENA]
¢þ
>WENV182554859
OJCX01000144
[OJCX] seawater metagenome; Sea water
3414
3338
-
fMet
CAT
[ENA]
¢þ
>WENV182554851
OJCX01000001
[OJCX] seawater metagenome; Sea water
12346
12271
-
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK