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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJDF] seawater metagenome; Sea water
HIT:
66 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182556024
OJDF01004562
[OJDF] seawater metagenome; Sea water
58
133
+
Phe
GAA
[ENA]
¢þ
>WENV182556032
OJDF01005187
[OJDF] seawater metagenome; Sea water
60
136
+
Pro
TGG
[ENA]
¢þ
>WENV182556037
OJDF01005801
[OJDF] seawater metagenome; Sea water
61
147
+
Leu
CAG
[ENA]
¢þ
>WENV182556029
OJDF01004648
[OJDF] seawater metagenome; Sea water
86
161
+
Gly
GCC
[ENA]
¢þ
>WENV182556044
OJDF01006625
[OJDF] seawater metagenome; Sea water
104
28
-
Asp
GTC
[ENA]
¢þ
>WENV182556010
OJDF01001386
[OJDF] seawater metagenome; Sea water
136
49
-
Ser
GGA
[ENA]
¢þ
>WENV182556031
OJDF01005054
[OJDF] seawater metagenome; Sea water
166
250
+
Leu
TAG
[ENA]
¢þ
>WENV182556033
OJDF01005187
[OJDF] seawater metagenome; Sea water
167
243
+
Arg
TCT
[ENA]
¢þ
>WENV182556021
OJDF01004141
[OJDF] seawater metagenome; Sea water
178
251
+
Gly
TCC
[ENA]
¢þ
>WENV182556043
OJDF01006625
[OJDF] seawater metagenome; Sea water
189
114
-
Val
TAC
[ENA]
¢þ
>WENV182556025
OJDF01004562
[OJDF] seawater metagenome; Sea water
194
269
+
Thr
TGT
[ENA]
¢þ
>WENV182556017
OJDF01003178
[OJDF] seawater metagenome; Sea water
196
122
-
Thr
GGT
[ENA]
¢þ
>WENV182556019
OJDF01003772
[OJDF] seawater metagenome; Sea water
225
141
-
Leu
TAG
[ENA]
¢þ
>WENV182556040
OJDF01005841
[OJDF] seawater metagenome; Sea water
229
154
-
Ala
TGC
[ENA]
¢þ
>WENV182555982
OJDF01000013
[OJDF] seawater metagenome; Sea water
231
306
+
Trp
CCA
[ENA]
¢þ
>WENV182556022
OJDF01004141
[OJDF] seawater metagenome; Sea water
257
332
+
Thr
GGT
[ENA]
¢þ
>WENV182556026
OJDF01004562
[OJDF] seawater metagenome; Sea water
310
394
+
Tyr
GTA
[ENA]
¢þ
>WENV182556039
OJDF01005841
[OJDF] seawater metagenome; Sea water
326
250
-
Ile
GAT
[ENA]
¢þ
>WENV182556034
OJDF01005187
[OJDF] seawater metagenome; Sea water
363
439
+
Pro
TGG
[ENA]
¢þ
>WENV182555987
OJDF01000081
[OJDF] seawater metagenome; Sea water
375
290
-
Leu
GAG
[ENA]
¢þ
>WENV182556042
OJDF01006573
[OJDF] seawater metagenome; Sea water
407
332
-
Ala
TGC
[ENA]
¢þ
>WENV182556027
OJDF01004562
[OJDF] seawater metagenome; Sea water
440
514
+
Gly
TCC
[ENA]
¢þ
>WENV182556036
OJDF01005736
[OJDF] seawater metagenome; Sea water
442
369
-
Lys
CTT
[ENA]
¢þ
>WENV182556030
OJDF01004648
[OJDF] seawater metagenome; Sea water
464
537
+
Cys
GCA
[ENA]
¢þ
>WENV182556035
OJDF01005187
[OJDF] seawater metagenome; Sea water
498
574
+
Arg
TCT
[ENA]
¢þ
>WENV182556041
OJDF01006573
[OJDF] seawater metagenome; Sea water
501
425
-
Ile
GAT
[ENA]
¢þ
>WENV182556038
OJDF01005841
[OJDF] seawater metagenome; Sea water
502
427
-
Ala
TGC
[ENA]
¢þ
>WENV182556028
OJDF01004562
[OJDF] seawater metagenome; Sea water
526
601
+
Thr
GGT
[ENA]
¢þ
>WENV182556023
OJDF01004505
[OJDF] seawater metagenome; Sea water
608
533
-
Trp
CCA
[ENA]
¢þ
>WENV182556018
OJDF01003691
[OJDF] seawater metagenome; Sea water
695
619
-
Ile2
CAT
[ENA]
¢þ
>WENV182556020
OJDF01003873
[OJDF] seawater metagenome; Sea water
728
653
-
Gln
TTG
[ENA]
¢þ
>WENV182556001
OJDF01000985
[OJDF] seawater metagenome; Sea water
814
739
-
His
GTG
[ENA]
¢þ
>WENV182556016
OJDF01002974
[OJDF] seawater metagenome; Sea water
837
913
+
Val
GAC
[ENA]
¢þ
>WENV182556000
OJDF01000985
[OJDF] seawater metagenome; Sea water
918
842
-
Arg
TCT
[ENA]
¢þ
>WENV182556002
OJDF01000999
[OJDF] seawater metagenome; Sea water
993
1068
+
Trp
CCA
[ENA]
¢þ
>WENV182556007
OJDF01001232
[OJDF] seawater metagenome; Sea water
1021
945
-
Pro
GGG
[ENA]
¢þ
>WENV182555999
OJDF01000985
[OJDF] seawater metagenome; Sea water
1021
945
-
Pro
TGG
[ENA]
¢þ
>WENV182555998
OJDF01000985
[OJDF] seawater metagenome; Sea water
1107
1032
-
Asn
GTT
[ENA]
¢þ
>WENV182556015
OJDF01002132
[OJDF] seawater metagenome; Sea water
1141
1217
+
Met
CAT
[ENA]
¢þ
>WENV182556014
OJDF01002088
[OJDF] seawater metagenome; Sea water
1174
1248
+
Arg
ACG
[ENA]
¢þ
>WENV182556013
OJDF01001924
[OJDF] seawater metagenome; Sea water
1199
1284
+
Leu
GAG
[ENA]
¢þ
>WENV182556011
OJDF01001635
[OJDF] seawater metagenome; Sea water
1201
1291
+
Ser
TGA
[ENA]
¢þ
>WENV182555990
OJDF01000150
[OJDF] seawater metagenome; Sea water
1225
1150
-
Gln
TTG
[ENA]
¢þ
>WENV182556012
OJDF01001814
[OJDF] seawater metagenome; Sea water
1338
1413
+
Asn
GTT
[ENA]
¢þ
>WENV182555994
OJDF01000955
[OJDF] seawater metagenome; Sea water
1486
1561
+
Thr
TGT
[ENA]
¢þ
>WENV182556008
OJDF01001234
[OJDF] seawater metagenome; Sea water
1508
1598
+
Ser
GCT
[ENA]
¢þ
>WENV182555995
OJDF01000955
[OJDF] seawater metagenome; Sea water
1639
1722
+
Tyr
GTA
[ENA]
¢þ
>WENV182556009
OJDF01001234
[OJDF] seawater metagenome; Sea water
1682
1758
+
Arg
ACG
[ENA]
¢þ
>WENV182556005
OJDF01001057
[OJDF] seawater metagenome; Sea water
1772
1698
-
Gln
TTG
[ENA]
¢þ
>WENV182555996
OJDF01000955
[OJDF] seawater metagenome; Sea water
1799
1872
+
Gly
TCC
[ENA]
¢þ
>WENV182556006
OJDF01001099
[OJDF] seawater metagenome; Sea water
1829
1755
-
Gln
TTG
[ENA]
¢þ
>WENV182556004
OJDF01001057
[OJDF] seawater metagenome; Sea water
1861
1777
-
Leu
TAG
[ENA]
¢þ
>WENV182555997
OJDF01000955
[OJDF] seawater metagenome; Sea water
1917
1992
+
Thr
GGT
[ENA]
¢þ
>WENV182555986
OJDF01000041
[OJDF] seawater metagenome; Sea water
1943
1867
-
Asp
GTC
[ENA]
¢þ
>WENV182556003
OJDF01001057
[OJDF] seawater metagenome; Sea water
1983
1907
-
Met
CAT
[ENA]
¢þ
>WENV182555991
OJDF01000190
[OJDF] seawater metagenome; Sea water
2846
2922
+
Asp
GTC
[ENA]
¢þ
>WENV182555989
OJDF01000129
[OJDF] seawater metagenome; Sea water
3315
3390
+
Phe
GAA
[ENA]
¢þ
>WENV182555993
OJDF01000274
[OJDF] seawater metagenome; Sea water
4218
4293
+
Arg
CCT
[ENA]
¢þ
>WENV182555992
OJDF01000196
[OJDF] seawater metagenome; Sea water
4724
4649
-
Trp
CCA
[ENA]
¢þ
>WENV182555988
OJDF01000120
[OJDF] seawater metagenome; Sea water
5931
6004
+
Gly
CCC
[ENA]
¢þ
>WENV182555985
OJDF01000041
[OJDF] seawater metagenome; Sea water
8771
8696
-
His
GTG
[ENA]
¢þ
>WENV182555984
OJDF01000041
[OJDF] seawater metagenome; Sea water
8878
8802
-
Arg
TCT
[ENA]
¢þ
>WENV182555983
OJDF01000041
[OJDF] seawater metagenome; Sea water
8979
8903
-
Pro
TGG
[ENA]
¢þ
>WENV182555981
OJDF01000001
[OJDF] seawater metagenome; Sea water
17110
17024
-
Leu
TAA
[ENA]
¢þ
>WENV182555980
OJDF01000001
[OJDF] seawater metagenome; Sea water
17331
17258
-
Cys
GCA
[ENA]
¢þ
>WENV182555979
OJDF01000001
[OJDF] seawater metagenome; Sea water
17459
17384
-
Gly
GCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK