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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJDP] seawater metagenome; Sea water
HIT:
132 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182559467
OJDP01013691
[OJDP] seawater metagenome; Sea water
2
77
+
Ala
TGC
[ENA]
¢þ
>WENV182559390
OJDP01001537
[OJDP] seawater metagenome; Sea water
29
105
+
Arg
ACG
[ENA]
¢þ
>WENV182559469
OJDP01014308
[OJDP] seawater metagenome; Sea water
34
109
+
Ala
GGC
[ENA]
¢þ
>WENV182559479
OJDP01016501
[OJDP] seawater metagenome; Sea water
37
113
+
His
GTG
[ENA]
¢þ
>WENV182559456
OJDP01012638
[OJDP] seawater metagenome; Sea water
38
113
+
Thr
CGT
[ENA]
¢þ
>WENV182559387
OJDP01001489
[OJDP] seawater metagenome; Sea water
50
134
+
Tyr
GTA
[ENA]
¢þ
>WENV182559425
OJDP01004727
[OJDP] seawater metagenome; Sea water
52
138
+
Leu
TAA
[ENA]
¢þ
>WENV182559404
OJDP01002268
[OJDP] seawater metagenome; Sea water
56
132
+
Pro
TGG
[ENA]
¢þ
>WENV182559432
OJDP01007163
[OJDP] seawater metagenome; Sea water
57
142
+
Leu
TAG
[ENA]
¢þ
>WENV182559452
OJDP01010787
[OJDP] seawater metagenome; Sea water
73
148
+
Ala
TGC
[ENA]
¢þ
>WENV182559397
OJDP01001791
[OJDP] seawater metagenome; Sea water
77
151
+
Met
CAT
[ENA]
¢þ
>WENV182559493
OJDP01022463
[OJDP] seawater metagenome; Sea water
92
6
-
Leu
GAG
[ENA]
¢þ
>WENV182559463
OJDP01013292
[OJDP] seawater metagenome; Sea water
119
44
-
Val
TAC
[ENA]
¢þ
>WENV182559436
OJDP01007623
[OJDP] seawater metagenome; Sea water
124
51
-
Pro
GGG
[ENA]
¢þ
>WENV182559417
OJDP01003332
[OJDP] seawater metagenome; Sea water
125
50
-
Asn
GTT
[ENA]
¢þ
>WENV182559468
OJDP01013691
[OJDP] seawater metagenome; Sea water
125
201
+
Ile
GAT
[ENA]
¢þ
>WENV182559444
OJDP01009343
[OJDP] seawater metagenome; Sea water
131
204
+
Gly
TCC
[ENA]
¢þ
>WENV182559409
OJDP01002443
[OJDP] seawater metagenome; Sea water
133
60
-
Trp
CCA
[ENA]
¢þ
>WENV182559450
OJDP01010545
[OJDP] seawater metagenome; Sea water
143
68
-
Ile
GAT
[ENA]
¢þ
>WENV182559420
OJDP01003854
[OJDP] seawater metagenome; Sea water
146
70
-
Arg
ACG
[ENA]
¢þ
>WENV182559458
OJDP01013092
[OJDP] seawater metagenome; Sea water
149
232
+
Tyr
GTA
[ENA]
¢þ
>WENV182559439
OJDP01008346
[OJDP] seawater metagenome; Sea water
151
235
+
Leu
TAG
[ENA]
¢þ
>WENV182559419
OJDP01003567
[OJDP] seawater metagenome; Sea water
159
75
-
Leu
CAG
[ENA]
¢þ
>WENV182559405
OJDP01002268
[OJDP] seawater metagenome; Sea water
159
235
+
Arg
TCT
[ENA]
¢þ
>WENV182559491
OJDP01021603
[OJDP] seawater metagenome; Sea water
160
78
-
Tyr
GTA
[ENA]
¢þ
>WENV182559486
OJDP01020125
[OJDP] seawater metagenome; Sea water
162
88
-
Pro
CGG
[ENA]
¢þ
>WENV182559483
OJDP01018088
[OJDP] seawater metagenome; Sea water
167
243
+
Arg
TCT
[ENA]
¢þ
>WENV182559368
OJDP01000200
[OJDP] seawater metagenome; Sea water
172
257
+
Leu
TAG
[ENA]
¢þ
>WENV182559403
OJDP01002170
[OJDP] seawater metagenome; Sea water
174
259
+
Leu
TAG
[ENA]
¢þ
>WENV182559437
OJDP01007634
[OJDP] seawater metagenome; Sea water
180
256
+
Ile
GAT
[ENA]
¢þ
>WENV182559488
OJDP01021163
[OJDP] seawater metagenome; Sea water
189
114
-
Gln
TTG
[ENA]
¢þ
>WENV182559482
OJDP01018039
[OJDP] seawater metagenome; Sea water
202
117
-
Leu
GAG
[ENA]
¢þ
>WENV182559402
OJDP01002149
[OJDP] seawater metagenome; Sea water
205
121
-
Leu
TAG
[ENA]
¢þ
>WENV182559393
OJDP01001620
[OJDP] seawater metagenome; Sea water
205
129
-
Arg
GCG
[ENA]
¢þ
>WENV182559454
OJDP01011046
[OJDP] seawater metagenome; Sea water
206
131
-
Thr
GGT
[ENA]
¢þ
>WENV182559388
OJDP01001489
[OJDP] seawater metagenome; Sea water
210
283
+
Gly
TCC
[ENA]
¢þ
>WENV182559445
OJDP01009343
[OJDP] seawater metagenome; Sea water
216
291
+
Thr
GGT
[ENA]
¢þ
>WENV182559428
OJDP01005785
[OJDP] seawater metagenome; Sea water
251
326
+
Ala
TGC
[ENA]
¢þ
>WENV182559406
OJDP01002268
[OJDP] seawater metagenome; Sea water
268
343
+
His
GTG
[ENA]
¢þ
>WENV182559490
OJDP01021603
[OJDP] seawater metagenome; Sea water
272
198
-
Thr
TGT
[ENA]
¢þ
>WENV182559438
OJDP01007634
[OJDP] seawater metagenome; Sea water
274
347
+
Ala
TGC
[ENA]
¢þ
>WENV182559477
OJDP01016227
[OJDP] seawater metagenome; Sea water
278
203
-
Ala
TGC
[ENA]
¢þ
>WENV182559385
OJDP01001193
[OJDP] seawater metagenome; Sea water
281
355
+
Gln
TTG
[ENA]
¢þ
>WENV182559431
OJDP01006759
[OJDP] seawater metagenome; Sea water
292
205
-
Ser
GGA
[ENA]
¢þ
>WENV182559459
OJDP01013092
[OJDP] seawater metagenome; Sea water
311
384
+
Gly
TCC
[ENA]
¢þ
>WENV182559492
OJDP01022173
[OJDP] seawater metagenome; Sea water
322
396
+
fMet
CAT
[ENA]
¢þ
>WENV182559375
OJDP01000564
[OJDP] seawater metagenome; Sea water
333
408
+
Gln
TTG
[ENA]
¢þ
>WENV182559392
OJDP01001620
[OJDP] seawater metagenome; Sea water
338
246
-
Ser
GCT
[ENA]
¢þ
>WENV182559484
OJDP01018088
[OJDP] seawater metagenome; Sea water
338
413
+
His
GTG
[ENA]
¢þ
>WENV182559472
OJDP01014550
[OJDP] seawater metagenome; Sea water
341
431
+
Ser
GCT
[ENA]
¢þ
>WENV182559362
OJDP01000003
[OJDP] seawater metagenome; Sea water
347
422
+
Thr
TGT
[ENA]
¢þ
>WENV182559429
OJDP01005785
[OJDP] seawater metagenome; Sea water
358
434
+
Ile
GAT
[ENA]
¢þ
>WENV182559489
OJDP01021603
[OJDP] seawater metagenome; Sea water
358
440
+
Tyr
GTA
[ENA]
¢þ
>WENV182559481
OJDP01017825
[OJDP] seawater metagenome; Sea water
364
437
+
Gly
TCC
[ENA]
¢þ
>WENV182559396
OJDP01001674
[OJDP] seawater metagenome; Sea water
369
280
-
Ser
TGA
[ENA]
¢þ
>WENV182559485
OJDP01018133
[OJDP] seawater metagenome; Sea water
391
309
-
Leu
CAG
[ENA]
¢þ
>WENV182559453
OJDP01011046
[OJDP] seawater metagenome; Sea water
401
328
-
Gly
TCC
[ENA]
¢þ
>WENV182559457
OJDP01012719
[OJDP] seawater metagenome; Sea water
417
342
-
Trp
CCA
[ENA]
¢þ
>WENV182559460
OJDP01013092
[OJDP] seawater metagenome; Sea water
429
504
+
Thr
GGT
[ENA]
¢þ
>WENV182559399
OJDP01001922
[OJDP] seawater metagenome; Sea water
443
368
-
Trp
CCA
[ENA]
¢þ
>WENV182559435
OJDP01007369
[OJDP] seawater metagenome; Sea water
443
369
-
Arg
ACG
[ENA]
¢þ
>WENV182559455
OJDP01011786
[OJDP] seawater metagenome; Sea water
444
533
+
Ser
GCT
[ENA]
¢þ
>WENV182559430
OJDP01006759
[OJDP] seawater metagenome; Sea water
447
360
-
Ser
CGA
[ENA]
¢þ
>WENV182559395
OJDP01001674
[OJDP] seawater metagenome; Sea water
460
385
-
Trp
CCA
[ENA]
¢þ
>WENV182559366
OJDP01000078
[OJDP] seawater metagenome; Sea water
461
537
+
Trp
CCA
[ENA]
¢þ
>WENV182559363
OJDP01000003
[OJDP] seawater metagenome; Sea water
468
552
+
Tyr
GTA
[ENA]
¢þ
>WENV182559466
OJDP01013669
[OJDP] seawater metagenome; Sea water
474
401
-
Cys
GCA
[ENA]
¢þ
>WENV182559473
OJDP01014550
[OJDP] seawater metagenome; Sea water
480
556
+
Arg
GCG
[ENA]
¢þ
>WENV182559487
OJDP01020194
[OJDP] seawater metagenome; Sea water
487
411
-
Ile2
CAT
[ENA]
¢þ
>WENV182559476
OJDP01016227
[OJDP] seawater metagenome; Sea water
488
412
-
Ile
GAT
[ENA]
¢þ
>WENV182559465
OJDP01013418
[OJDP] seawater metagenome; Sea water
506
433
-
Gly
TCC
[ENA]
¢þ
>WENV182559480
OJDP01016778
[OJDP] seawater metagenome; Sea water
511
586
+
Val
TAC
[ENA]
¢þ
>WENV182559475
OJDP01015610
[OJDP] seawater metagenome; Sea water
512
437
-
Thr
GGT
[ENA]
¢þ
>WENV182559443
OJDP01008448
[OJDP] seawater metagenome; Sea water
518
443
-
Val
TAC
[ENA]
¢þ
>WENV182559448
OJDP01009839
[OJDP] seawater metagenome; Sea water
527
451
-
Arg
CCG
[ENA]
¢þ
>WENV182559461
OJDP01013246
[OJDP] seawater metagenome; Sea water
544
619
+
Val
TAC
[ENA]
¢þ
>WENV182559471
OJDP01014334
[OJDP] seawater metagenome; Sea water
550
625
+
Thr
CGT
[ENA]
¢þ
>WENV182559478
OJDP01016263
[OJDP] seawater metagenome; Sea water
562
487
-
Glu
CTC
[ENA]
¢þ
>WENV182559474
OJDP01014550
[OJDP] seawater metagenome; Sea water
583
659
+
Arg
ACG
[ENA]
¢þ
>WENV182559364
OJDP01000003
[OJDP] seawater metagenome; Sea water
608
683
+
Gly
TCC
[ENA]
¢þ
>WENV182559470
OJDP01014325
[OJDP] seawater metagenome; Sea water
609
534
-
Thr
GGT
[ENA]
¢þ
>WENV182559423
OJDP01004238
[OJDP] seawater metagenome; Sea water
614
538
-
Met
CAT
[ENA]
¢þ
>WENV182559447
OJDP01009818
[OJDP] seawater metagenome; Sea water
617
542
-
Ala
TGC
[ENA]
¢þ
>WENV182559434
OJDP01007369
[OJDP] seawater metagenome; Sea water
621
534
-
Ser
GCT
[ENA]
¢þ
>WENV182559462
OJDP01013246
[OJDP] seawater metagenome; Sea water
632
708
+
Asp
GTC
[ENA]
¢þ
>WENV182559464
OJDP01013418
[OJDP] seawater metagenome; Sea water
638
553
-
Tyr
GTA
[ENA]
¢þ
>WENV182559451
OJDP01010741
[OJDP] seawater metagenome; Sea water
653
578
-
Trp
CCA
[ENA]
¢þ
>WENV182559442
OJDP01008422
[OJDP] seawater metagenome; Sea water
690
615
-
Thr
GGT
[ENA]
¢þ
>WENV182559365
OJDP01000003
[OJDP] seawater metagenome; Sea water
695
769
+
Thr
GGT
[ENA]
¢þ
>WENV182559433
OJDP01007369
[OJDP] seawater metagenome; Sea water
754
669
-
Ser
TGA
[ENA]
¢þ
>WENV182559446
OJDP01009818
[OJDP] seawater metagenome; Sea water
758
682
-
Ile
GAT
[ENA]
¢þ
>WENV182559441
OJDP01008422
[OJDP] seawater metagenome; Sea water
774
701
-
Gly
TCC
[ENA]
¢þ
>WENV182559421
OJDP01003947
[OJDP] seawater metagenome; Sea water
794
869
+
Thr
CGT
[ENA]
¢þ
>WENV182559449
OJDP01010007
[OJDP] seawater metagenome; Sea water
814
730
-
Leu
TAG
[ENA]
¢þ
>WENV182559440
OJDP01008364
[OJDP] seawater metagenome; Sea water
882
807
-
Thr
GGT
[ENA]
¢þ
>WENV182559427
OJDP01005320
[OJDP] seawater metagenome; Sea water
1015
942
-
Thr
GGT
[ENA]
¢þ
>WENV182559422
OJDP01003994
[OJDP] seawater metagenome; Sea water
1088
1014
-
Gln
TTG
[ENA]
¢þ
>WENV182559391
OJDP01001585
[OJDP] seawater metagenome; Sea water
1102
1026
-
Arg
TCT
[ENA]
¢þ
>WENV182559426
OJDP01005320
[OJDP] seawater metagenome; Sea water
1105
1032
-
Gly
TCC
[ENA]
¢þ
>WENV182559378
OJDP01000664
[OJDP] seawater metagenome; Sea water
1144
1060
-
Ala
AGC
[ENA]
¢þ
>WENV182559407
OJDP01002297
[OJDP] seawater metagenome; Sea water
1198
1274
+
Trp
CCA
[ENA]
¢þ
>WENV182559424
OJDP01004251
[OJDP] seawater metagenome; Sea water
1224
1149
-
Thr
GGT
[ENA]
¢þ
>WENV182559370
OJDP01000204
[OJDP] seawater metagenome; Sea water
1274
1198
-
Asp
GTC
[ENA]
¢þ
>WENV182559415
OJDP01002959
[OJDP] seawater metagenome; Sea water
1345
1261
-
Leu
TAG
[ENA]
¢þ
>WENV182559369
OJDP01000204
[OJDP] seawater metagenome; Sea water
1356
1282
-
Val
TAC
[ENA]
¢þ
>WENV182559416
OJDP01003082
[OJDP] seawater metagenome; Sea water
1382
1456
+
Val
CAC
[ENA]
¢þ
>WENV182559379
OJDP01000718
[OJDP] seawater metagenome; Sea water
1396
1472
+
Asp
GTC
[ENA]
¢þ
>WENV182559418
OJDP01003412
[OJDP] seawater metagenome; Sea water
1418
1343
-
Thr
GGT
[ENA]
¢þ
>WENV182559413
OJDP01002708
[OJDP] seawater metagenome; Sea water
1434
1359
-
Ala
TGC
[ENA]
¢þ
>WENV182559401
OJDP01002115
[OJDP] seawater metagenome; Sea water
1459
1386
-
Gly
TCC
[ENA]
¢þ
>WENV182559414
OJDP01002864
[OJDP] seawater metagenome; Sea water
1466
1392
-
Thr
GGT
[ENA]
¢þ
>WENV182559411
OJDP01002652
[OJDP] seawater metagenome; Sea water
1467
1392
-
Ala
TGC
[ENA]
¢þ
>WENV182559408
OJDP01002443
[OJDP] seawater metagenome; Sea water
1529
1456
-
Thr
GGT
[ENA]
¢þ
>WENV182559412
OJDP01002708
[OJDP] seawater metagenome; Sea water
1561
1484
-
Ile
GAT
[ENA]
¢þ
>WENV182559384
OJDP01000962
[OJDP] seawater metagenome; Sea water
1562
1487
-
Thr
GGT
[ENA]
¢þ
>WENV182559410
OJDP01002652
[OJDP] seawater metagenome; Sea water
1595
1519
-
Ile
GAT
[ENA]
¢þ
>WENV182559389
OJDP01001489
[OJDP] seawater metagenome; Sea water
1629
1704
+
Trp
CCA
[ENA]
¢þ
>WENV182559383
OJDP01000962
[OJDP] seawater metagenome; Sea water
1654
1581
-
Gly
TCC
[ENA]
¢þ
>WENV182559400
OJDP01002115
[OJDP] seawater metagenome; Sea water
1680
1596
-
Tyr
GTA
[ENA]
¢þ
>WENV182559382
OJDP01000962
[OJDP] seawater metagenome; Sea water
1818
1735
-
Tyr
GTA
[ENA]
¢þ
>WENV182559398
OJDP01001922
[OJDP] seawater metagenome; Sea water
1824
1749
-
Thr
GGT
[ENA]
¢þ
>WENV182559394
OJDP01001674
[OJDP] seawater metagenome; Sea water
1860
1785
-
Thr
GGT
[ENA]
¢þ
>WENV182559381
OJDP01000962
[OJDP] seawater metagenome; Sea water
1961
1886
-
Thr
TGT
[ENA]
¢þ
>WENV182559386
OJDP01001453
[OJDP] seawater metagenome; Sea water
2048
1974
-
Gln
TTG
[ENA]
¢þ
>WENV182559380
OJDP01000883
[OJDP] seawater metagenome; Sea water
2108
2183
+
Trp
CCA
[ENA]
¢þ
>WENV182559372
OJDP01000264
[OJDP] seawater metagenome; Sea water
2340
2265
-
Trp
CCA
[ENA]
¢þ
>WENV182559367
OJDP01000131
[OJDP] seawater metagenome; Sea water
2649
2574
-
Trp
CCA
[ENA]
¢þ
>WENV182559377
OJDP01000650
[OJDP] seawater metagenome; Sea water
2662
2586
-
Ile
GAT
[ENA]
¢þ
>WENV182559376
OJDP01000650
[OJDP] seawater metagenome; Sea water
2762
2687
-
Ala
TGC
[ENA]
¢þ
>WENV182559374
OJDP01000323
[OJDP] seawater metagenome; Sea water
3438
3365
-
Ala
TGC
[ENA]
¢þ
>WENV182559373
OJDP01000323
[OJDP] seawater metagenome; Sea water
3580
3505
-
Ile
GAT
[ENA]
¢þ
>WENV182559371
OJDP01000264
[OJDP] seawater metagenome; Sea water
3780
3706
-
Thr
GGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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