This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJDR] seawater metagenome; Sea water
HIT:
110 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182560021
OJDR01000296
[OJDR] seawater metagenome; Sea water
3
88
+
Leu
TAA
[ENA]
¢þ
>WENV182560034
OJDR01000490
[OJDR] seawater metagenome; Sea water
68
140
+
fMet
CAT
[ENA]
¢þ
>WENV182560006
OJDR01000157
[OJDR] seawater metagenome; Sea water
83
7
-
Arg
ACG
[ENA]
¢þ
>WENV182560028
OJDR01000385
[OJDR] seawater metagenome; Sea water
96
171
+
Lys
TTT
[ENA]
¢þ
>WENV182559997
OJDR01000122
[OJDR] seawater metagenome; Sea water
114
39
-
Thr
TGT
[ENA]
¢þ
>WENV182560044
OJDR01001364
[OJDR] seawater metagenome; Sea water
125
196
+
Asn
GTT
[ENA]
¢þ
>WENV182560022
OJDR01000296
[OJDR] seawater metagenome; Sea water
129
204
+
Gly
GCC
[ENA]
¢þ
>WENV182560050
OJDR01003502
[OJDR] seawater metagenome; Sea water
142
217
+
Thr
TGT
[ENA]
¢þ
>WENV182560046
OJDR01002911
[OJDR] seawater metagenome; Sea water
162
238
+
Arg
TCT
[ENA]
¢þ
>WENV182560056
OJDR01004859
[OJDR] seawater metagenome; Sea water
168
241
+
Gly
GCC
[ENA]
¢þ
>WENV182560017
OJDR01000220
[OJDR] seawater metagenome; Sea water
198
273
+
Trp
CCA
[ENA]
¢þ
>WENV182560045
OJDR01001364
[OJDR] seawater metagenome; Sea water
199
270
+
Val
TAC
[ENA]
¢þ
>WENV182560057
OJDR01005961
[OJDR] seawater metagenome; Sea water
221
295
+
Gly
GCC
[ENA]
¢þ
>WENV182560051
OJDR01003502
[OJDR] seawater metagenome; Sea water
242
317
+
Asn
GTT
[ENA]
¢þ
>WENV182560054
OJDR01004498
[OJDR] seawater metagenome; Sea water
253
164
-
Ser
GCT
[ENA]
¢þ
>WENV182560023
OJDR01000296
[OJDR] seawater metagenome; Sea water
264
349
+
Leu
TAA
[ENA]
¢þ
>WENV182559996
OJDR01000122
[OJDR] seawater metagenome; Sea water
304
229
-
Phe
GAA
[ENA]
¢þ
>WENV182560053
OJDR01004226
[OJDR] seawater metagenome; Sea water
314
238
-
Arg
ACG
[ENA]
¢þ
>WENV182559963
OJDR01000028
[OJDR] seawater metagenome; Sea water
332
257
-
Asn
GTT
[ENA]
¢þ
>WENV182560035
OJDR01000560
[OJDR] seawater metagenome; Sea water
351
427
+
Arg
CCG
[ENA]
¢þ
>WENV182560005
OJDR01000157
[OJDR] seawater metagenome; Sea water
360
284
-
Arg
ACG
[ENA]
¢þ
>WENV182559972
OJDR01000042
[OJDR] seawater metagenome; Sea water
395
479
+
Tyr
GTA
[ENA]
¢þ
>WENV182560043
OJDR01000900
[OJDR] seawater metagenome; Sea water
422
496
+
Asp
GTC
[ENA]
¢þ
>WENV182560055
OJDR01004794
[OJDR] seawater metagenome; Sea water
473
398
-
Arg
CCT
[ENA]
¢þ
>WENV182560037
OJDR01000619
[OJDR] seawater metagenome; Sea water
487
562
+
Ile2
CAT
[ENA]
¢þ
>WENV182560039
OJDR01000757
[OJDR] seawater metagenome; Sea water
526
597
+
Ile
TAT
[ENA]
¢þ
>WENV182560049
OJDR01003137
[OJDR] seawater metagenome; Sea water
538
465
-
Ala
TGC
[ENA]
¢þ
>WENV182560052
OJDR01003609
[OJDR] seawater metagenome; Sea water
542
616
+
Ala
TGC
[ENA]
¢þ
>WENV182560047
OJDR01002911
[OJDR] seawater metagenome; Sea water
553
628
+
Leu
TAA
[ENA]
¢þ
>WENV182560004
OJDR01000157
[OJDR] seawater metagenome; Sea water
596
505
-
Ser
GCT
[ENA]
¢þ
>WENV182560040
OJDR01000757
[OJDR] seawater metagenome; Sea water
601
674
+
Ile2
CAT
[ENA]
¢þ
>WENV182560048
OJDR01003137
[OJDR] seawater metagenome; Sea water
615
542
-
Ile
GAT
[ENA]
¢þ
>WENV182560038
OJDR01000619
[OJDR] seawater metagenome; Sea water
648
722
+
Leu
TAA
[ENA]
¢þ
>WENV182560024
OJDR01000332
[OJDR] seawater metagenome; Sea water
708
618
-
Ser
TGA
[ENA]
¢þ
>WENV182560025
OJDR01000356
[OJDR] seawater metagenome; Sea water
731
806
+
Ala
GGC
[ENA]
¢þ
>WENV182560042
OJDR01000772
[OJDR] seawater metagenome; Sea water
771
696
-
Ala
TGC
[ENA]
¢þ
>WENV182560041
OJDR01000772
[OJDR] seawater metagenome; Sea water
857
781
-
Ile
GAT
[ENA]
¢þ
>WENV182560026
OJDR01000356
[OJDR] seawater metagenome; Sea water
924
999
+
Glu
TTC
[ENA]
¢þ
>WENV182560027
OJDR01000356
[OJDR] seawater metagenome; Sea water
1178
1253
+
Glu
TTC
[ENA]
¢þ
>WENV182560033
OJDR01000480
[OJDR] seawater metagenome; Sea water
1474
1398
-
Ile
GAT
[ENA]
¢þ
>WENV182560030
OJDR01000418
[OJDR] seawater metagenome; Sea water
1516
1591
+
Arg
TCT
[ENA]
¢þ
>WENV182560036
OJDR01000565
[OJDR] seawater metagenome; Sea water
1553
1628
+
Lys
TTT
[ENA]
¢þ
>WENV182560032
OJDR01000480
[OJDR] seawater metagenome; Sea water
1584
1509
-
Ala
TGC
[ENA]
¢þ
>WENV182560031
OJDR01000418
[OJDR] seawater metagenome; Sea water
1647
1718
+
Gly
TCC
[ENA]
¢þ
>WENV182560029
OJDR01000385
[OJDR] seawater metagenome; Sea water
1681
1768
+
Ser
GGA
[ENA]
¢þ
>WENV182559994
OJDR01000109
[OJDR] seawater metagenome; Sea water
1818
1893
+
Phe
GAA
[ENA]
¢þ
>WENV182560018
OJDR01000232
[OJDR] seawater metagenome; Sea water
2880
2966
+
Leu
GAG
[ENA]
¢þ
>WENV182560011
OJDR01000169
[OJDR] seawater metagenome; Sea water
2954
3029
+
Arg
CCT
[ENA]
¢þ
>WENV182560019
OJDR01000232
[OJDR] seawater metagenome; Sea water
3109
3185
+
fMet
CAT
[ENA]
¢þ
>WENV182559968
OJDR01000040
[OJDR] seawater metagenome; Sea water
4437
4513
+
Pro
TGG
[ENA]
¢þ
>WENV182559969
OJDR01000040
[OJDR] seawater metagenome; Sea water
4779
4855
+
Arg
TCT
[ENA]
¢þ
>WENV182559970
OJDR01000040
[OJDR] seawater metagenome; Sea water
4863
4938
+
His
GTG
[ENA]
¢þ
>WENV182559971
OJDR01000040
[OJDR] seawater metagenome; Sea water
4970
5046
+
Pro
TGG
[ENA]
¢þ
>WENV182560015
OJDR01000201
[OJDR] seawater metagenome; Sea water
5712
5622
-
Ser
TGA
[ENA]
¢þ
>WENV182560000
OJDR01000140
[OJDR] seawater metagenome; Sea water
5789
5865
+
Val
GAC
[ENA]
¢þ
>WENV182560020
OJDR01000287
[OJDR] seawater metagenome; Sea water
6612
6687
+
Gly
GCC
[ENA]
¢þ
>WENV182560014
OJDR01000201
[OJDR] seawater metagenome; Sea water
7283
7193
-
Ser
TGA
[ENA]
¢þ
>WENV182559980
OJDR01000076
[OJDR] seawater metagenome; Sea water
8815
8739
-
Pro
TGG
[ENA]
¢þ
>WENV182559979
OJDR01000076
[OJDR] seawater metagenome; Sea water
8893
8818
-
Asn
GTT
[ENA]
¢þ
>WENV182559978
OJDR01000076
[OJDR] seawater metagenome; Sea water
9138
9062
-
Pro
TGG
[ENA]
¢þ
>WENV182559977
OJDR01000076
[OJDR] seawater metagenome; Sea water
9216
9141
-
Asn
GTT
[ENA]
¢þ
>WENV182559949
OJDR01000003
[OJDR] seawater metagenome; Sea water
9238
9154
-
Leu
CAA
[ENA]
¢þ
>WENV182559992
OJDR01000097
[OJDR] seawater metagenome; Sea water
10813
10738
-
Thr
TGT
[ENA]
¢þ
>WENV182560012
OJDR01000175
[OJDR] seawater metagenome; Sea water
11211
11127
-
Leu
CAA
[ENA]
¢þ
>WENV182560001
OJDR01000140
[OJDR] seawater metagenome; Sea water
13745
13821
+
Pro
GGG
[ENA]
¢þ
>WENV182560016
OJDR01000204
[OJDR] seawater metagenome; Sea water
14873
14799
-
Gln
TTG
[ENA]
¢þ
>WENV182560013
OJDR01000194
[OJDR] seawater metagenome; Sea water
16041
15965
-
Trp
CCA
[ENA]
¢þ
>WENV182560010
OJDR01000167
[OJDR] seawater metagenome; Sea water
18514
18601
+
Ser
GGA
[ENA]
¢þ
>WENV182559961
OJDR01000024
[OJDR] seawater metagenome; Sea water
18932
18856
-
Val
GAC
[ENA]
¢þ
>WENV182560009
OJDR01000165
[OJDR] seawater metagenome; Sea water
20891
20966
+
Lys
TTT
[ENA]
¢þ
>WENV182560008
OJDR01000162
[OJDR] seawater metagenome; Sea water
21903
21827
-
Arg
ACG
[ENA]
¢þ
>WENV182560007
OJDR01000162
[OJDR] seawater metagenome; Sea water
22033
21957
-
Arg
ACG
[ENA]
¢þ
>WENV182559952
OJDR01000005
[OJDR] seawater metagenome; Sea water
22419
22343
-
Arg
CCG
[ENA]
¢þ
>WENV182559993
OJDR01000098
[OJDR] seawater metagenome; Sea water
23609
23533
-
Pro
GGG
[ENA]
¢þ
>WENV182560002
OJDR01000140
[OJDR] seawater metagenome; Sea water
24950
25025
+
Val
TAC
[ENA]
¢þ
>WENV182560003
OJDR01000140
[OJDR] seawater metagenome; Sea water
25075
25151
+
Asp
GTC
[ENA]
¢þ
>WENV182559998
OJDR01000128
[OJDR] seawater metagenome; Sea water
26353
26278
-
Thr
AGT
[ENA]
¢þ
>WENV182559999
OJDR01000131
[OJDR] seawater metagenome; Sea water
26597
26673
+
Arg
TCT
[ENA]
¢þ
>WENV182559986
OJDR01000086
[OJDR] seawater metagenome; Sea water
27450
27374
-
Arg
CCG
[ENA]
¢þ
>WENV182559957
OJDR01000018
[OJDR] seawater metagenome; Sea water
28584
28500
-
Leu
GAG
[ENA]
¢þ
>WENV182559995
OJDR01000110
[OJDR] seawater metagenome; Sea water
31641
31566
-
His
GTG
[ENA]
¢þ
>WENV182559966
OJDR01000035
[OJDR] seawater metagenome; Sea water
33938
33862
-
Met
CAT
[ENA]
¢þ
>WENV182559983
OJDR01000081
[OJDR] seawater metagenome; Sea water
36079
35994
-
Leu
TAA
[ENA]
¢þ
>WENV182559982
OJDR01000081
[OJDR] seawater metagenome; Sea water
36184
36111
-
Cys
GCA
[ENA]
¢þ
>WENV182559981
OJDR01000081
[OJDR] seawater metagenome; Sea water
36359
36285
-
Gly
GCC
[ENA]
¢þ
>WENV182559988
OJDR01000096
[OJDR] seawater metagenome; Sea water
36765
36840
+
Thr
TGT
[ENA]
¢þ
>WENV182559989
OJDR01000096
[OJDR] seawater metagenome; Sea water
36878
36962
+
Tyr
GTA
[ENA]
¢þ
>WENV182559990
OJDR01000096
[OJDR] seawater metagenome; Sea water
36992
37066
+
Gly
TCC
[ENA]
¢þ
>WENV182559991
OJDR01000096
[OJDR] seawater metagenome; Sea water
37082
37157
+
Thr
GGT
[ENA]
¢þ
>WENV182559987
OJDR01000087
[OJDR] seawater metagenome; Sea water
37518
37443
-
Arg
CCT
[ENA]
¢þ
>WENV182559984
OJDR01000085
[OJDR] seawater metagenome; Sea water
39846
39922
+
Asp
GTC
[ENA]
¢þ
>WENV182559985
OJDR01000085
[OJDR] seawater metagenome; Sea water
39974
40050
+
Asp
GTC
[ENA]
¢þ
>WENV182559967
OJDR01000037
[OJDR] seawater metagenome; Sea water
40149
40224
+
Gly
CCC
[ENA]
¢þ
>WENV182559976
OJDR01000065
[OJDR] seawater metagenome; Sea water
40419
40495
+
Ile2
CAT
[ENA]
¢þ
>WENV182559948
OJDR01000002
[OJDR] seawater metagenome; Sea water
46323
46247
-
Ile2
CAT
[ENA]
¢þ
>WENV182559973
OJDR01000061
[OJDR] seawater metagenome; Sea water
47179
47262
+
Tyr
GTA
[ENA]
¢þ
>WENV182559974
OJDR01000061
[OJDR] seawater metagenome; Sea water
47311
47384
+
Gly
TCC
[ENA]
¢þ
>WENV182559975
OJDR01000061
[OJDR] seawater metagenome; Sea water
47391
47466
+
Thr
GGT
[ENA]
¢þ
>WENV182559965
OJDR01000034
[OJDR] seawater metagenome; Sea water
55620
55696
+
Trp
CCA
[ENA]
¢þ
>WENV182559964
OJDR01000030
[OJDR] seawater metagenome; Sea water
66904
66980
+
Met
CAT
[ENA]
¢þ
>WENV182559962
OJDR01000026
[OJDR] seawater metagenome; Sea water
68298
68388
+
Ser
TGA
[ENA]
¢þ
>WENV182559960
OJDR01000024
[OJDR] seawater metagenome; Sea water
70301
70226
-
Asn
GTT
[ENA]
¢þ
>WENV182559959
OJDR01000022
[OJDR] seawater metagenome; Sea water
70800
70716
-
Leu
TAG
[ENA]
¢þ
>WENV182559958
OJDR01000022
[OJDR] seawater metagenome; Sea water
70921
70846
-
His
GTG
[ENA]
¢þ
>WENV182559956
OJDR01000015
[OJDR] seawater metagenome; Sea water
88286
88211
-
Val
TAC
[ENA]
¢þ
>WENV182559955
OJDR01000015
[OJDR] seawater metagenome; Sea water
88402
88327
-
Val
TAC
[ENA]
¢þ
>WENV182559954
OJDR01000013
[OJDR] seawater metagenome; Sea water
91934
92010
+
fMet
CAT
[ENA]
¢þ
>WENV182559953
OJDR01000008
[OJDR] seawater metagenome; Sea water
101553
101478
-
Phe
GAA
[ENA]
¢þ
>WENV182559950
OJDR01000004
[OJDR] seawater metagenome; Sea water
152325
152400
+
Ala
GGC
[ENA]
¢þ
>WENV182559951
OJDR01000004
[OJDR] seawater metagenome; Sea water
152524
152599
+
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK