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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJDS] seawater metagenome; Sea water
HIT:
61 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182560069
OJDS01003821
[OJDS] seawater metagenome; Sea water
33
110
+
Ile
GAT
[ENA]
¢þ
>WENV182560074
OJDS01004672
[OJDS] seawater metagenome; Sea water
38
112
+
Thr
TGT
[ENA]
¢þ
>WENV182560081
OJDS01009558
[OJDS] seawater metagenome; Sea water
46
122
+
Pro
CGG
[ENA]
¢þ
>WENV182560079
OJDS01006443
[OJDS] seawater metagenome; Sea water
47
121
+
Thr
GGT
[ENA]
¢þ
>WENV182560099
OJDS01022777
[OJDS] seawater metagenome; Sea water
55
127
+
Asn
GTT
[ENA]
¢þ
>WENV182560115
OJDS01056897
[OJDS] seawater metagenome; Sea water
61
137
+
Ile
GAT
[ENA]
¢þ
>WENV182560080
OJDS01006725
[OJDS] seawater metagenome; Sea water
76
151
+
His
GTG
[ENA]
¢þ
>WENV182560100
OJDS01024028
[OJDS] seawater metagenome; Sea water
88
172
+
Leu
TAG
[ENA]
¢þ
>WENV182560062
OJDS01002603
[OJDS] seawater metagenome; Sea water
114
185
+
Thr
GGT
[ENA]
¢þ
>WENV182560075
OJDS01004672
[OJDS] seawater metagenome; Sea water
120
202
+
Tyr
GTA
[ENA]
¢þ
>WENV182560082
OJDS01009581
[OJDS] seawater metagenome; Sea water
121
46
-
Pro
TGG
[ENA]
¢þ
>WENV182560070
OJDS01003821
[OJDS] seawater metagenome; Sea water
130
205
+
Ala
TGC
[ENA]
¢þ
>WENV182560104
OJDS01035054
[OJDS] seawater metagenome; Sea water
130
211
+
Leu
CAG
[ENA]
¢þ
>WENV182560072
OJDS01004178
[OJDS] seawater metagenome; Sea water
131
204
+
Gly
TCC
[ENA]
¢þ
>WENV182560109
OJDS01049319
[OJDS] seawater metagenome; Sea water
133
63
-
Sup
TCA
[ENA]
¢þ
>WENV182560086
OJDS01013115
[OJDS] seawater metagenome; Sea water
137
53
-
Ala
AGC
[ENA]
¢þ
>WENV182560116
OJDS01056897
[OJDS] seawater metagenome; Sea water
138
211
+
Ala
TGC
[ENA]
¢þ
>WENV182560095
OJDS01016622
[OJDS] seawater metagenome; Sea water
203
276
+
Ile
GAT
[ENA]
¢þ
>WENV182560073
OJDS01004178
[OJDS] seawater metagenome; Sea water
216
291
+
Thr
GGT
[ENA]
¢þ
>WENV182560112
OJDS01053099
[OJDS] seawater metagenome; Sea water
243
168
-
His
GTG
[ENA]
¢þ
>WENV182560117
OJDS01060555
[OJDS] seawater metagenome; Sea water
250
325
+
Ile
GAT
[ENA]
¢þ
>WENV182560094
OJDS01015107
[OJDS] seawater metagenome; Sea water
253
182
-
Gly
CCC
[ENA]
¢þ
>WENV182560114
OJDS01056638
[OJDS] seawater metagenome; Sea water
269
196
-
Asp
GTC
[ENA]
¢þ
>WENV182560096
OJDS01016622
[OJDS] seawater metagenome; Sea water
280
353
+
Ala
TGC
[ENA]
¢þ
>WENV182560076
OJDS01004672
[OJDS] seawater metagenome; Sea water
305
377
+
Thr
GGT
[ENA]
¢þ
>WENV182560118
OJDS01060555
[OJDS] seawater metagenome; Sea water
334
407
+
Ala
TGC
[ENA]
¢þ
>WENV182560113
OJDS01056638
[OJDS] seawater metagenome; Sea water
351
278
-
Val
TAC
[ENA]
¢þ
>WENV182560111
OJDS01053099
[OJDS] seawater metagenome; Sea water
358
282
-
Arg
TCT
[ENA]
¢þ
>WENV182560106
OJDS01043310
[OJDS] seawater metagenome; Sea water
360
285
-
Gly
GCC
[ENA]
¢þ
>WENV182560093
OJDS01015107
[OJDS] seawater metagenome; Sea water
364
292
-
Phe
GAA
[ENA]
¢þ
>WENV182560097
OJDS01017338
[OJDS] seawater metagenome; Sea water
375
447
+
Gly
TCC
[ENA]
¢þ
>WENV182560102
OJDS01033752
[OJDS] seawater metagenome; Sea water
413
332
-
Ser
AGA
[ENA]
¢þ
>WENV182560092
OJDS01015107
[OJDS] seawater metagenome; Sea water
451
378
-
Ile
AAT
[ENA]
¢þ
>WENV182560110
OJDS01053099
[OJDS] seawater metagenome; Sea water
454
378
-
Pro
TGG
[ENA]
¢þ
>WENV182560108
OJDS01049319
[OJDS] seawater metagenome; Sea water
478
397
-
Tyr
GTA
[ENA]
¢þ
>WENV182560061
OJDS01002378
[OJDS] seawater metagenome; Sea water
492
417
-
Trp
CCA
[ENA]
¢þ
>WENV182560101
OJDS01033752
[OJDS] seawater metagenome; Sea water
512
438
-
Val
CAC
[ENA]
¢þ
>WENV182560107
OJDS01044620
[OJDS] seawater metagenome; Sea water
530
456
-
Thr
GGT
[ENA]
¢þ
>WENV182560105
OJDS01043310
[OJDS] seawater metagenome; Sea water
547
472
-
Glu
TTC
[ENA]
¢þ
>WENV182560103
OJDS01034816
[OJDS] seawater metagenome; Sea water
553
479
-
Thr
GGT
[ENA]
¢þ
>WENV182560091
OJDS01015107
[OJDS] seawater metagenome; Sea water
564
479
-
Gly
GCC
[ENA]
¢þ
>WENV182560098
OJDS01017338
[OJDS] seawater metagenome; Sea water
576
648
+
His
GTG
[ENA]
¢þ
>WENV182560088
OJDS01014376
[OJDS] seawater metagenome; Sea water
705
630
-
Ala
TGC
[ENA]
¢þ
>WENV182560087
OJDS01014376
[OJDS] seawater metagenome; Sea water
820
744
-
Ile
GAT
[ENA]
¢þ
>WENV182560083
OJDS01009719
[OJDS] seawater metagenome; Sea water
863
939
+
Trp
CCA
[ENA]
¢þ
>WENV182560085
OJDS01010655
[OJDS] seawater metagenome; Sea water
882
808
-
Gln
TTG
[ENA]
¢þ
>WENV182560090
OJDS01014998
[OJDS] seawater metagenome; Sea water
912
839
-
Ala
TGC
[ENA]
¢þ
>WENV182560084
OJDS01010091
[OJDS] seawater metagenome; Sea water
932
1004
+
Arg
TCT
[ENA]
¢þ
>WENV182560089
OJDS01014998
[OJDS] seawater metagenome; Sea water
989
913
-
Ile
GAT
[ENA]
¢þ
>WENV182560077
OJDS01004973
[OJDS] seawater metagenome; Sea water
1188
1113
-
Gln
TTG
[ENA]
¢þ
>WENV182560078
OJDS01006365
[OJDS] seawater metagenome; Sea water
1410
1326
-
Leu
TAG
[ENA]
¢þ
>WENV182560066
OJDS01002861
[OJDS] seawater metagenome; Sea water
1525
1450
-
Thr
GGT
[ENA]
¢þ
>WENV182560068
OJDS01003705
[OJDS] seawater metagenome; Sea water
1553
1478
-
Thr
GGT
[ENA]
¢þ
>WENV182560067
OJDS01003132
[OJDS] seawater metagenome; Sea water
1560
1634
+
Pro
GGG
[ENA]
¢þ
>WENV182560071
OJDS01004064
[OJDS] seawater metagenome; Sea water
1604
1532
-
Ala
TGC
[ENA]
¢þ
>WENV182560065
OJDS01002861
[OJDS] seawater metagenome; Sea water
1617
1544
-
Gly
TCC
[ENA]
¢þ
>WENV182560064
OJDS01002861
[OJDS] seawater metagenome; Sea water
1781
1698
-
Tyr
GTA
[ENA]
¢þ
>WENV182560063
OJDS01002603
[OJDS] seawater metagenome; Sea water
1885
1960
+
Trp
CCA
[ENA]
¢þ
>WENV182560060
OJDS01002378
[OJDS] seawater metagenome; Sea water
2055
1980
-
Thr
GGT
[ENA]
¢þ
>WENV182560059
OJDS01000145
[OJDS] seawater metagenome; Sea water
4083
4008
-
Trp
CCA
[ENA]
¢þ
>WENV182560058
OJDS01000108
[OJDS] seawater metagenome; Sea water
4413
4338
-
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK