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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJEG] seawater metagenome; Sea water
HIT:
78 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182565097
OJEG01000999
[OJEG] seawater metagenome; Sea water
6
82
+
fMet
CAT
[ENA]
¢þ
>WENV182565129
OJEG01003878
[OJEG] seawater metagenome; Sea water
49
124
+
Thr
TGT
[ENA]
¢þ
>WENV182565139
OJEG01007375
[OJEG] seawater metagenome; Sea water
52
128
+
Pro
TGG
[ENA]
¢þ
>WENV182565115
OJEG01002258
[OJEG] seawater metagenome; Sea water
53
129
+
Arg
CCT
[ENA]
¢þ
>WENV182565126
OJEG01003513
[OJEG] seawater metagenome; Sea water
60
136
+
Pro
GGG
[ENA]
¢þ
>WENV182565123
OJEG01002773
[OJEG] seawater metagenome; Sea water
84
8
-
Asp
GTC
[ENA]
¢þ
>WENV182565096
OJEG01000714
[OJEG] seawater metagenome; Sea water
121
196
+
Val
TAC
[ENA]
¢þ
>WENV182565102
OJEG01001427
[OJEG] seawater metagenome; Sea water
128
52
-
Arg
CCG
[ENA]
¢þ
>WENV182565117
OJEG01002442
[OJEG] seawater metagenome; Sea water
129
43
-
Leu
TAA
[ENA]
¢þ
>WENV182565148
OJEG01009247
[OJEG] seawater metagenome; Sea water
137
212
+
Gly
GCC
[ENA]
¢þ
>WENV182565104
OJEG01001984
[OJEG] seawater metagenome; Sea water
150
223
+
Gly
TCC
[ENA]
¢þ
>WENV182565124
OJEG01003265
[OJEG] seawater metagenome; Sea water
163
87
-
His
GTG
[ENA]
¢þ
>WENV182565130
OJEG01003878
[OJEG] seawater metagenome; Sea water
165
249
+
Tyr
GTA
[ENA]
¢þ
>WENV182565122
OJEG01002773
[OJEG] seawater metagenome; Sea water
212
136
-
Asp
GTC
[ENA]
¢þ
>WENV182565128
OJEG01003654
[OJEG] seawater metagenome; Sea water
221
146
-
Glu
TTC
[ENA]
¢þ
>WENV182565105
OJEG01001984
[OJEG] seawater metagenome; Sea water
240
314
+
Thr
GGT
[ENA]
¢þ
>WENV182565149
OJEG01009247
[OJEG] seawater metagenome; Sea water
244
317
+
Cys
GCA
[ENA]
¢þ
>WENV182565127
OJEG01003515
[OJEG] seawater metagenome; Sea water
288
372
+
Ala
AGC
[ENA]
¢þ
>WENV182565118
OJEG01002514
[OJEG] seawater metagenome; Sea water
289
363
+
Gln
TTG
[ENA]
¢þ
>WENV182565131
OJEG01003878
[OJEG] seawater metagenome; Sea water
295
369
+
Gly
TCC
[ENA]
¢þ
>WENV182565140
OJEG01007375
[OJEG] seawater metagenome; Sea water
299
375
+
Arg
TCT
[ENA]
¢þ
>WENV182565121
OJEG01002773
[OJEG] seawater metagenome; Sea water
324
249
-
Val
TAC
[ENA]
¢þ
>WENV182565082
OJEG01000025
[OJEG] seawater metagenome; Sea water
345
260
-
Leu
GAG
[ENA]
¢þ
>WENV182565150
OJEG01009247
[OJEG] seawater metagenome; Sea water
355
441
+
Leu
TAA
[ENA]
¢þ
>WENV182565132
OJEG01003878
[OJEG] seawater metagenome; Sea water
381
456
+
Thr
GGT
[ENA]
¢þ
>WENV182565141
OJEG01007375
[OJEG] seawater metagenome; Sea water
399
474
+
His
GTG
[ENA]
¢þ
>WENV182565146
OJEG01008670
[OJEG] seawater metagenome; Sea water
421
346
-
Ala
TGC
[ENA]
¢þ
>WENV182565147
OJEG01009057
[OJEG] seawater metagenome; Sea water
442
367
-
Trp
CCA
[ENA]
¢þ
>WENV182565144
OJEG01008162
[OJEG] seawater metagenome; Sea water
454
381
-
Met
CAT
[ENA]
¢þ
>WENV182565142
OJEG01007375
[OJEG] seawater metagenome; Sea water
488
564
+
Pro
TGG
[ENA]
¢þ
>WENV182565138
OJEG01007153
[OJEG] seawater metagenome; Sea water
493
569
+
Pro
GGG
[ENA]
¢þ
>WENV182565145
OJEG01008670
[OJEG] seawater metagenome; Sea water
515
439
-
Ile
GAT
[ENA]
¢þ
>WENV182565137
OJEG01006579
[OJEG] seawater metagenome; Sea water
529
453
-
Arg
CCT
[ENA]
¢þ
>WENV182565136
OJEG01006543
[OJEG] seawater metagenome; Sea water
536
610
+
Val
CAC
[ENA]
¢þ
>WENV182565143
OJEG01008162
[OJEG] seawater metagenome; Sea water
590
517
-
Thr
GGT
[ENA]
¢þ
>WENV182565135
OJEG01006322
[OJEG] seawater metagenome; Sea water
641
565
-
Arg
CCT
[ENA]
¢þ
>WENV182565134
OJEG01004536
[OJEG] seawater metagenome; Sea water
773
698
-
Ala
TGC
[ENA]
¢þ
>WENV182565133
OJEG01004536
[OJEG] seawater metagenome; Sea water
867
791
-
Ile
GAT
[ENA]
¢þ
>WENV182565084
OJEG01000048
[OJEG] seawater metagenome; Sea water
895
809
-
Leu
CAA
[ENA]
¢þ
>WENV182565092
OJEG01000613
[OJEG] seawater metagenome; Sea water
995
1085
+
Ser
TGA
[ENA]
¢þ
>WENV182565099
OJEG01001151
[OJEG] seawater metagenome; Sea water
1000
925
-
Asn
GTT
[ENA]
¢þ
>WENV182565125
OJEG01003382
[OJEG] seawater metagenome; Sea water
1008
922
-
Leu
CAG
[ENA]
¢þ
>WENV182565106
OJEG01002078
[OJEG] seawater metagenome; Sea water
1029
1105
+
Pro
TGG
[ENA]
¢þ
>WENV182565114
OJEG01002144
[OJEG] seawater metagenome; Sea water
1035
960
-
Thr
GGT
[ENA]
¢þ
>WENV182565113
OJEG01002144
[OJEG] seawater metagenome; Sea water
1116
1042
-
Gly
TCC
[ENA]
¢þ
>WENV182565116
OJEG01002413
[OJEG] seawater metagenome; Sea water
1122
1048
-
Gln
TTG
[ENA]
¢þ
>WENV182565107
OJEG01002078
[OJEG] seawater metagenome; Sea water
1156
1232
+
Arg
TCT
[ENA]
¢þ
>WENV182565120
OJEG01002682
[OJEG] seawater metagenome; Sea water
1158
1082
-
Met
CAT
[ENA]
¢þ
>WENV182565119
OJEG01002645
[OJEG] seawater metagenome; Sea water
1213
1287
+
Asp
GTC
[ENA]
¢þ
>WENV182565112
OJEG01002144
[OJEG] seawater metagenome; Sea water
1239
1155
-
Tyr
GTA
[ENA]
¢þ
>WENV182565111
OJEG01002144
[OJEG] seawater metagenome; Sea water
1322
1247
-
Thr
TGT
[ENA]
¢þ
>WENV182565108
OJEG01002078
[OJEG] seawater metagenome; Sea water
1327
1402
+
His
GTG
[ENA]
¢þ
>WENV182565109
OJEG01002078
[OJEG] seawater metagenome; Sea water
1458
1542
+
Leu
TAG
[ENA]
¢þ
>WENV182565110
OJEG01002144
[OJEG] seawater metagenome; Sea water
1499
1424
-
Phe
GAA
[ENA]
¢þ
>WENV182565093
OJEG01000638
[OJEG] seawater metagenome; Sea water
1669
1745
+
Pro
TGG
[ENA]
¢þ
>WENV182565089
OJEG01000331
[OJEG] seawater metagenome; Sea water
1695
1771
+
Ile2
CAT
[ENA]
¢þ
>WENV182565094
OJEG01000638
[OJEG] seawater metagenome; Sea water
1772
1848
+
Arg
TCT
[ENA]
¢þ
>WENV182565095
OJEG01000638
[OJEG] seawater metagenome; Sea water
1881
1956
+
His
GTG
[ENA]
¢þ
>WENV182565098
OJEG01001040
[OJEG] seawater metagenome; Sea water
1905
1978
+
Gly
CCC
[ENA]
¢þ
>WENV182565103
OJEG01001546
[OJEG] seawater metagenome; Sea water
1923
1839
-
Leu
TAG
[ENA]
¢þ
>WENV182565101
OJEG01001291
[OJEG] seawater metagenome; Sea water
2013
1938
-
Ala
TGC
[ENA]
¢þ
>WENV182565100
OJEG01001291
[OJEG] seawater metagenome; Sea water
2122
2046
-
Ile
GAT
[ENA]
¢þ
>WENV182565087
OJEG01000160
[OJEG] seawater metagenome; Sea water
2216
2140
-
Asp
GTC
[ENA]
¢þ
>WENV182565091
OJEG01000573
[OJEG] seawater metagenome; Sea water
3570
3657
+
Ser
GGA
[ENA]
¢þ
>WENV182565083
OJEG01000030
[OJEG] seawater metagenome; Sea water
3901
3826
-
Gln
TTG
[ENA]
¢þ
>WENV182565088
OJEG01000279
[OJEG] seawater metagenome; Sea water
4246
4322
+
Ile2
CAT
[ENA]
¢þ
>WENV182565077
OJEG01000016
[OJEG] seawater metagenome; Sea water
4252
4327
+
Thr
TGT
[ENA]
¢þ
>WENV182565078
OJEG01000016
[OJEG] seawater metagenome; Sea water
4405
4488
+
Tyr
GTA
[ENA]
¢þ
>WENV182565079
OJEG01000016
[OJEG] seawater metagenome; Sea water
4567
4640
+
Gly
TCC
[ENA]
¢þ
>WENV182565090
OJEG01000374
[OJEG] seawater metagenome; Sea water
4571
4661
+
Ser
GCT
[ENA]
¢þ
>WENV182565080
OJEG01000016
[OJEG] seawater metagenome; Sea water
4685
4760
+
Thr
GGT
[ENA]
¢þ
>WENV182565085
OJEG01000083
[OJEG] seawater metagenome; Sea water
5204
5279
+
Thr
CGT
[ENA]
¢þ
>WENV182565081
OJEG01000016
[OJEG] seawater metagenome; Sea water
6174
6249
+
Trp
CCA
[ENA]
¢þ
>WENV182565076
OJEG01000014
[OJEG] seawater metagenome; Sea water
6518
6593
+
Lys
TTT
[ENA]
¢þ
>WENV182565086
OJEG01000095
[OJEG] seawater metagenome; Sea water
7366
7290
-
Val
GAC
[ENA]
¢þ
>WENV182565075
OJEG01000009
[OJEG] seawater metagenome; Sea water
12041
11955
-
Leu
TAA
[ENA]
¢þ
>WENV182565074
OJEG01000009
[OJEG] seawater metagenome; Sea water
12248
12175
-
Cys
GCA
[ENA]
¢þ
>WENV182565073
OJEG01000009
[OJEG] seawater metagenome; Sea water
12378
12303
-
Gly
GCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK