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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJER] seawater metagenome; Sea water
HIT:
58 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182568191
OJER01001078
[OJER] seawater metagenome; Sea water
47
123
+
fMet
CAT
[ENA]
¢þ
>WENV182568228
OJER01006693
[OJER] seawater metagenome; Sea water
59
135
+
Trp
CCA
[ENA]
¢þ
>WENV182568212
OJER01004450
[OJER] seawater metagenome; Sea water
77
1
-
Asp
GTC
[ENA]
¢þ
>WENV182568232
OJER01006986
[OJER] seawater metagenome; Sea water
80
5
-
Val
TAC
[ENA]
¢þ
>WENV182568220
OJER01006239
[OJER] seawater metagenome; Sea water
102
177
+
Ala
GGC
[ENA]
¢þ
>WENV182568203
OJER01001631
[OJER] seawater metagenome; Sea water
111
187
+
Trp
CCA
[ENA]
¢þ
>WENV182568201
OJER01001407
[OJER] seawater metagenome; Sea water
130
46
-
Leu
GAG
[ENA]
¢þ
>WENV182568189
OJER01000780
[OJER] seawater metagenome; Sea water
178
102
-
Trp
CCA
[ENA]
¢þ
>WENV182568215
OJER01005088
[OJER] seawater metagenome; Sea water
187
262
+
Thr
TGT
[ENA]
¢þ
>WENV182568231
OJER01006986
[OJER] seawater metagenome; Sea water
192
117
-
Val
TAC
[ENA]
¢þ
>WENV182568211
OJER01004450
[OJER] seawater metagenome; Sea water
194
119
-
Val
TAC
[ENA]
¢þ
>WENV182568210
OJER01004255
[OJER] seawater metagenome; Sea water
227
153
-
Arg
CCT
[ENA]
¢þ
>WENV182568224
OJER01006241
[OJER] seawater metagenome; Sea water
250
175
-
His
GTG
[ENA]
¢þ
>WENV182568209
OJER01003041
[OJER] seawater metagenome; Sea water
300
225
-
Ala
GGC
[ENA]
¢þ
>WENV182568216
OJER01005088
[OJER] seawater metagenome; Sea water
303
386
+
Tyr
GTA
[ENA]
¢þ
>WENV182568227
OJER01006628
[OJER] seawater metagenome; Sea water
309
234
-
Thr
GGT
[ENA]
¢þ
>WENV182568221
OJER01006239
[OJER] seawater metagenome; Sea water
314
389
+
Glu
TTC
[ENA]
¢þ
>WENV182568186
OJER01000504
[OJER] seawater metagenome; Sea water
319
393
+
Gln
TTG
[ENA]
¢þ
>WENV182568226
OJER01006628
[OJER] seawater metagenome; Sea water
391
317
-
Gly
TCC
[ENA]
¢þ
>WENV182568217
OJER01005088
[OJER] seawater metagenome; Sea water
397
471
+
Gly
TCC
[ENA]
¢þ
>WENV182568223
OJER01006241
[OJER] seawater metagenome; Sea water
421
345
-
Arg
TCT
[ENA]
¢þ
>WENV182568230
OJER01006986
[OJER] seawater metagenome; Sea water
423
348
-
Val
TAC
[ENA]
¢þ
>WENV182568218
OJER01005088
[OJER] seawater metagenome; Sea water
490
565
+
Thr
GGT
[ENA]
¢þ
>WENV182568225
OJER01006628
[OJER] seawater metagenome; Sea water
509
425
-
Tyr
GTA
[ENA]
¢þ
>WENV182568229
OJER01006986
[OJER] seawater metagenome; Sea water
535
460
-
Val
TAC
[ENA]
¢þ
>WENV182568222
OJER01006241
[OJER] seawater metagenome; Sea water
548
472
-
Pro
TGG
[ENA]
¢þ
>WENV182568219
OJER01005090
[OJER] seawater metagenome; Sea water
578
492
-
Leu
CAA
[ENA]
¢þ
>WENV182568214
OJER01005051
[OJER] seawater metagenome; Sea water
584
510
-
Gly
GCC
[ENA]
¢þ
>WENV182568202
OJER01001591
[OJER] seawater metagenome; Sea water
587
512
-
Phe
GAA
[ENA]
¢þ
>WENV182568213
OJER01004485
[OJER] seawater metagenome; Sea water
597
521
-
Ile
GAT
[ENA]
¢þ
>WENV182568198
OJER01001360
[OJER] seawater metagenome; Sea water
699
774
+
Ala
GGC
[ENA]
¢þ
>WENV182568206
OJER01002471
[OJER] seawater metagenome; Sea water
701
776
+
Gly
GCC
[ENA]
¢þ
>WENV182568207
OJER01002471
[OJER] seawater metagenome; Sea water
791
864
+
Cys
GCA
[ENA]
¢þ
>WENV182568208
OJER01002471
[OJER] seawater metagenome; Sea water
927
1011
+
Leu
TAA
[ENA]
¢þ
>WENV182568205
OJER01002347
[OJER] seawater metagenome; Sea water
1035
959
-
Ile
GAT
[ENA]
¢þ
>WENV182568199
OJER01001360
[OJER] seawater metagenome; Sea water
1048
1123
+
Glu
TTC
[ENA]
¢þ
>WENV182568204
OJER01002035
[OJER] seawater metagenome; Sea water
1099
1025
-
Gln
TTG
[ENA]
¢þ
>WENV182568190
OJER01000796
[OJER] seawater metagenome; Sea water
1133
1057
-
Trp
CCA
[ENA]
¢þ
>WENV182568196
OJER01001109
[OJER] seawater metagenome; Sea water
1159
1084
-
Gln
TTG
[ENA]
¢þ
>WENV182568195
OJER01001109
[OJER] seawater metagenome; Sea water
1248
1164
-
Leu
TAG
[ENA]
¢þ
>WENV182568194
OJER01001109
[OJER] seawater metagenome; Sea water
1331
1256
-
His
GTG
[ENA]
¢þ
>WENV182568200
OJER01001366
[OJER] seawater metagenome; Sea water
1354
1429
+
Asn
GTT
[ENA]
¢þ
>WENV182568197
OJER01001273
[OJER] seawater metagenome; Sea water
1441
1366
-
Thr
GGT
[ENA]
¢þ
>WENV182568193
OJER01001109
[OJER] seawater metagenome; Sea water
1505
1429
-
Arg
TCT
[ENA]
¢þ
>WENV182568192
OJER01001109
[OJER] seawater metagenome; Sea water
1607
1531
-
Pro
TGG
[ENA]
¢þ
>WENV182568180
OJER01000178
[OJER] seawater metagenome; Sea water
1751
1826
+
Thr
TGT
[ENA]
¢þ
>WENV182568188
OJER01000732
[OJER] seawater metagenome; Sea water
1835
1751
-
Leu
GAG
[ENA]
¢þ
>WENV182568181
OJER01000178
[OJER] seawater metagenome; Sea water
1887
1971
+
Tyr
GTA
[ENA]
¢þ
>WENV182568187
OJER01000610
[OJER] seawater metagenome; Sea water
1968
1894
-
Gln
TTG
[ENA]
¢þ
>WENV182568182
OJER01000178
[OJER] seawater metagenome; Sea water
2036
2110
+
Gly
TCC
[ENA]
¢þ
>WENV182568183
OJER01000178
[OJER] seawater metagenome; Sea water
2127
2202
+
Thr
GGT
[ENA]
¢þ
>WENV182568179
OJER01000090
[OJER] seawater metagenome; Sea water
2310
2235
-
Trp
CCA
[ENA]
¢þ
>WENV182568185
OJER01000440
[OJER] seawater metagenome; Sea water
2353
2429
+
Ile2
CAT
[ENA]
¢þ
>WENV182568184
OJER01000211
[OJER] seawater metagenome; Sea water
2950
3025
+
Lys
TTT
[ENA]
¢þ
>WENV182568178
OJER01000090
[OJER] seawater metagenome; Sea water
3873
3798
-
Thr
GGT
[ENA]
¢þ
>WENV182568177
OJER01000090
[OJER] seawater metagenome; Sea water
4059
3986
-
Gly
TCC
[ENA]
¢þ
>WENV182568176
OJER01000090
[OJER] seawater metagenome; Sea water
4236
4152
-
Tyr
GTA
[ENA]
¢þ
>WENV182568175
OJER01000017
[OJER] seawater metagenome; Sea water
7511
7586
+
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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