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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJET] seawater metagenome; Sea water
HIT:
116 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182568308
OJET01000516
[OJET] seawater metagenome; Sea water
21
94
+
Ile
GAT
[ENA]
¢þ
>WENV182568362
OJET01004862
[OJET] seawater metagenome; Sea water
37
111
+
Asp
GTC
[ENA]
¢þ
>WENV182568353
OJET01003428
[OJET] seawater metagenome; Sea water
50
123
+
Gly
TCC
[ENA]
¢þ
>WENV182568360
OJET01004726
[OJET] seawater metagenome; Sea water
52
128
+
fMet
CAT
[ENA]
¢þ
>WENV182568370
OJET01006378
[OJET] seawater metagenome; Sea water
91
166
+
Ala
TGC
[ENA]
¢þ
>WENV182568309
OJET01000516
[OJET] seawater metagenome; Sea water
101
174
+
Ala
TGC
[ENA]
¢þ
>WENV182568324
OJET01001520
[OJET] seawater metagenome; Sea water
104
180
+
Asp
GTC
[ENA]
¢þ
>WENV182568316
OJET01000819
[OJET] seawater metagenome; Sea water
110
181
+
Val
TAC
[ENA]
¢þ
>WENV182568345
OJET01002740
[OJET] seawater metagenome; Sea water
118
202
+
Leu
TAG
[ENA]
¢þ
>WENV182568371
OJET01006423
[OJET] seawater metagenome; Sea water
131
60
-
Arg
TCT
[ENA]
¢þ
>WENV182568342
OJET01002704
[OJET] seawater metagenome; Sea water
140
225
+
Tyr
GTA
[ENA]
¢þ
>WENV182568312
OJET01000622
[OJET] seawater metagenome; Sea water
147
72
-
Ala
GGC
[ENA]
¢þ
>WENV182568373
OJET01008239
[OJET] seawater metagenome; Sea water
149
222
+
Ala
TGC
[ENA]
¢þ
>WENV182568376
OJET01008462
[OJET] seawater metagenome; Sea water
150
222
+
Met
CAT
[ENA]
¢þ
>WENV182568364
OJET01005200
[OJET] seawater metagenome; Sea water
151
237
+
Leu
TAA
[ENA]
¢þ
>WENV182568350
OJET01003059
[OJET] seawater metagenome; Sea water
155
85
-
Gly
TCC
[ENA]
¢þ
>WENV182568322
OJET01001304
[OJET] seawater metagenome; Sea water
162
88
-
fMet
CAT
[ENA]
¢þ
>WENV182568375
OJET01008346
[OJET] seawater metagenome; Sea water
168
92
-
His
GTG
[ENA]
¢þ
>WENV182568378
OJET01008466
[OJET] seawater metagenome; Sea water
169
99
-
Gly
TCC
[ENA]
¢þ
>WENV182568272
OJET01000015
[OJET] seawater metagenome; Sea water
192
267
+
Glu
TTC
[ENA]
¢þ
>WENV182568305
OJET01000434
[OJET] seawater metagenome; Sea water
198
126
-
fMet
CAT
[ENA]
¢þ
>WENV182568348
OJET01002951
[OJET] seawater metagenome; Sea water
201
127
-
His
GTG
[ENA]
¢þ
>WENV182568357
OJET01004438
[OJET] seawater metagenome; Sea water
216
142
-
Ile2
CAT
[ENA]
¢þ
>WENV182568336
OJET01002225
[OJET] seawater metagenome; Sea water
222
146
-
Asn
GTT
[ENA]
¢þ
>WENV182568349
OJET01003059
[OJET] seawater metagenome; Sea water
233
158
-
Arg
TCT
[ENA]
¢þ
>WENV182568294
OJET01000159
[OJET] seawater metagenome; Sea water
251
176
-
Ala
GGC
[ENA]
¢þ
>WENV182568354
OJET01004255
[OJET] seawater metagenome; Sea water
252
181
-
Gln
TTG
[ENA]
¢þ
>WENV182568343
OJET01002704
[OJET] seawater metagenome; Sea water
272
345
+
Gly
TCC
[ENA]
¢þ
>WENV182568365
OJET01005200
[OJET] seawater metagenome; Sea water
278
366
+
Ser
TGA
[ENA]
¢þ
>WENV182568374
OJET01008346
[OJET] seawater metagenome; Sea water
281
204
-
Pro
TGG
[ENA]
¢þ
>WENV182568304
OJET01000404
[OJET] seawater metagenome; Sea water
284
196
-
Ser
TGA
[ENA]
¢þ
>WENV182568377
OJET01008466
[OJET] seawater metagenome; Sea water
285
357
+
Cys
GCA
[ENA]
¢þ
>WENV182568368
OJET01005936
[OJET] seawater metagenome; Sea water
296
369
+
Arg
ACG
[ENA]
¢þ
>WENV182568315
OJET01000788
[OJET] seawater metagenome; Sea water
348
272
-
Pro
GGG
[ENA]
¢þ
>WENV182568359
OJET01004704
[OJET] seawater metagenome; Sea water
378
464
+
Leu
TAA
[ENA]
¢þ
>WENV182568363
OJET01004970
[OJET] seawater metagenome; Sea water
396
321
-
Trp
CCA
[ENA]
¢þ
>WENV182568372
OJET01007482
[OJET] seawater metagenome; Sea water
412
493
+
Leu
TAG
[ENA]
¢þ
>WENV182568366
OJET01005499
[OJET] seawater metagenome; Sea water
416
340
-
Ile
GAT
[ENA]
¢þ
>WENV182568339
OJET01002488
[OJET] seawater metagenome; Sea water
417
333
-
Leu
TAA
[ENA]
¢þ
>WENV182568341
OJET01002579
[OJET] seawater metagenome; Sea water
426
502
+
Asp
GTC
[ENA]
¢þ
>WENV182568356
OJET01004412
[OJET] seawater metagenome; Sea water
435
507
+
Val
CAC
[ENA]
¢þ
>WENV182568379
OJET01008715
[OJET] seawater metagenome; Sea water
445
361
-
Ser
TGA
[ENA]
¢þ
>WENV182568369
OJET01005936
[OJET] seawater metagenome; Sea water
474
561
+
Ser
TGA
[ENA]
¢þ
>WENV182568347
OJET01002951
[OJET] seawater metagenome; Sea water
492
417
-
Phe
GAA
[ENA]
¢þ
>WENV182568321
OJET01001145
[OJET] seawater metagenome; Sea water
511
424
-
Ser
GGA
[ENA]
¢þ
>WENV182568335
OJET01002221
[OJET] seawater metagenome; Sea water
517
441
-
Arg
TCG
[ENA]
¢þ
>WENV182568346
OJET01002771
[OJET] seawater metagenome; Sea water
543
470
-
Gly
GCC
[ENA]
¢þ
>WENV182568361
OJET01004847
[OJET] seawater metagenome; Sea water
572
647
+
Thr
TGT
[ENA]
¢þ
>WENV182568355
OJET01004365
[OJET] seawater metagenome; Sea water
578
492
-
Leu
TAA
[ENA]
¢þ
>WENV182568358
OJET01004443
[OJET] seawater metagenome; Sea water
587
663
+
Arg
CCT
[ENA]
¢þ
>WENV182568323
OJET01001511
[OJET] seawater metagenome; Sea water
600
526
-
Cys
GCA
[ENA]
¢þ
>WENV182568331
OJET01001842
[OJET] seawater metagenome; Sea water
605
530
-
Thr
TGT
[ENA]
¢þ
>WENV182568367
OJET01005505
[OJET] seawater metagenome; Sea water
668
592
-
fMet
CAT
[ENA]
¢þ
>WENV182568306
OJET01000443
[OJET] seawater metagenome; Sea water
681
608
-
Asp
GTC
[ENA]
¢þ
>WENV182568334
OJET01002169
[OJET] seawater metagenome; Sea water
688
613
-
Phe
GAA
[ENA]
¢þ
>WENV182568295
OJET01000185
[OJET] seawater metagenome; Sea water
697
771
+
Gly
GCC
[ENA]
¢þ
>WENV182568330
OJET01001793
[OJET] seawater metagenome; Sea water
759
686
-
Ala
TGC
[ENA]
¢þ
>WENV182568352
OJET01003324
[OJET] seawater metagenome; Sea water
799
725
-
Arg
TCT
[ENA]
¢þ
>WENV182568338
OJET01002437
[OJET] seawater metagenome; Sea water
814
887
+
Pro
TGG
[ENA]
¢þ
>WENV182568351
OJET01003324
[OJET] seawater metagenome; Sea water
901
830
-
Val
TAC
[ENA]
¢þ
>WENV182568303
OJET01000383
[OJET] seawater metagenome; Sea water
917
1001
+
Leu
GAG
[ENA]
¢þ
>WENV182568327
OJET01001745
[OJET] seawater metagenome; Sea water
974
1059
+
Leu
CAA
[ENA]
¢þ
>WENV182568340
OJET01002519
[OJET] seawater metagenome; Sea water
996
1071
+
Trp
CCA
[ENA]
¢þ
>WENV182568344
OJET01002705
[OJET] seawater metagenome; Sea water
997
925
-
fMet
CAT
[ENA]
¢þ
>WENV182568301
OJET01000371
[OJET] seawater metagenome; Sea water
1070
1159
+
Ser
GGA
[ENA]
¢þ
>WENV182568329
OJET01001775
[OJET] seawater metagenome; Sea water
1109
1033
-
Arg
ACG
[ENA]
¢þ
>WENV182568333
OJET01002054
[OJET] seawater metagenome; Sea water
1216
1145
-
Lys
TTT
[ENA]
¢þ
>WENV182568337
OJET01002246
[OJET] seawater metagenome; Sea water
1230
1160
-
Gly
TCC
[ENA]
¢þ
>WENV182568332
OJET01001981
[OJET] seawater metagenome; Sea water
1285
1212
-
Gln
TTG
[ENA]
¢þ
>WENV182568328
OJET01001775
[OJET] seawater metagenome; Sea water
1306
1216
-
Ser
GCT
[ENA]
¢þ
>WENV182568313
OJET01000713
[OJET] seawater metagenome; Sea water
1355
1429
+
Arg
TCT
[ENA]
¢þ
>WENV182568325
OJET01001627
[OJET] seawater metagenome; Sea water
1369
1442
+
Arg
TCT
[ENA]
¢þ
>WENV182568300
OJET01000234
[OJET] seawater metagenome; Sea water
1431
1357
-
Arg
CCT
[ENA]
¢þ
>WENV182568318
OJET01000949
[OJET] seawater metagenome; Sea water
1433
1360
-
Cys
GCA
[ENA]
¢þ
>WENV182568326
OJET01001627
[OJET] seawater metagenome; Sea water
1447
1520
+
Asn
GTT
[ENA]
¢þ
>WENV182568319
OJET01001119
[OJET] seawater metagenome; Sea water
1645
1721
+
Trp
CCA
[ENA]
¢þ
>WENV182568314
OJET01000761
[OJET] seawater metagenome; Sea water
1747
1821
+
Arg
TCT
[ENA]
¢þ
>WENV182568298
OJET01000212
[OJET] seawater metagenome; Sea water
1842
1918
+
Ile
GAT
[ENA]
¢þ
>WENV182568310
OJET01000581
[OJET] seawater metagenome; Sea water
1862
1788
-
fMet
CAT
[ENA]
¢þ
>WENV182568299
OJET01000212
[OJET] seawater metagenome; Sea water
1928
2003
+
Ala
TGC
[ENA]
¢þ
>WENV182568302
OJET01000382
[OJET] seawater metagenome; Sea water
1973
2046
+
Gln
TTG
[ENA]
¢þ
>WENV182568320
OJET01001145
[OJET] seawater metagenome; Sea water
2042
1967
-
Lys
TTT
[ENA]
¢þ
>WENV182568307
OJET01000447
[OJET] seawater metagenome; Sea water
2118
2042
-
Ile2
CAT
[ENA]
¢þ
>WENV182568311
OJET01000622
[OJET] seawater metagenome; Sea water
2345
2420
+
Val
TAC
[ENA]
¢þ
>WENV182568317
OJET01000859
[OJET] seawater metagenome; Sea water
2369
2293
-
Ile
GAT
[ENA]
¢þ
>WENV182568296
OJET01000203
[OJET] seawater metagenome; Sea water
2390
2463
+
fMet
CAT
[ENA]
¢þ
>WENV182568290
OJET01000062
[OJET] seawater metagenome; Sea water
2714
2789
+
Thr
TGT
[ENA]
¢þ
>WENV182568292
OJET01000087
[OJET] seawater metagenome; Sea water
3303
3227
-
Ile
GAT
[ENA]
¢þ
>WENV182568297
OJET01000203
[OJET] seawater metagenome; Sea water
4032
4105
+
Gln
TTG
[ENA]
¢þ
>WENV182568293
OJET01000099
[OJET] seawater metagenome; Sea water
8137
8213
+
Asp
GTC
[ENA]
¢þ
>WENV182568291
OJET01000073
[OJET] seawater metagenome; Sea water
9744
9835
+
Ser
GCT
[ENA]
¢þ
>WENV182568289
OJET01000055
[OJET] seawater metagenome; Sea water
17617
17693
+
fMet
CAT
[ENA]
¢þ
>WENV182568286
OJET01000039
[OJET] seawater metagenome; Sea water
20595
20671
+
Ile2
CAT
[ENA]
¢þ
>WENV182568288
OJET01000052
[OJET] seawater metagenome; Sea water
20654
20568
-
Ile
TAT
[ENA]
¢þ
>WENV182568287
OJET01000049
[OJET] seawater metagenome; Sea water
24297
24372
+
Asn
GTT
[ENA]
¢þ
>WENV182568274
OJET01000018
[OJET] seawater metagenome; Sea water
27217
27293
+
Trp
CCA
[ENA]
¢þ
>WENV182568283
OJET01000030
[OJET] seawater metagenome; Sea water
42409
42333
-
Pro
TGG
[ENA]
¢þ
>WENV182568282
OJET01000030
[OJET] seawater metagenome; Sea water
42516
42441
-
His
GTG
[ENA]
¢þ
>WENV182568281
OJET01000030
[OJET] seawater metagenome; Sea water
42600
42524
-
Arg
TCT
[ENA]
¢þ
>WENV182568280
OJET01000030
[OJET] seawater metagenome; Sea water
42847
42771
-
Pro
TGG
[ENA]
¢þ
>WENV182568271
OJET01000014
[OJET] seawater metagenome; Sea water
48366
48442
+
Pro
GGG
[ENA]
¢þ
>WENV182568285
OJET01000035
[OJET] seawater metagenome; Sea water
51911
51836
-
Gly
GCC
[ENA]
¢þ
>WENV182568267
OJET01000011
[OJET] seawater metagenome; Sea water
54732
54816
+
Leu
GAG
[ENA]
¢þ
>WENV182568284
OJET01000031
[OJET] seawater metagenome; Sea water
64167
64243
+
Met
CAT
[ENA]
¢þ
>WENV182568275
OJET01000018
[OJET] seawater metagenome; Sea water
67282
67207
-
Phe
GAA
[ENA]
¢þ
>WENV182568273
OJET01000015
[OJET] seawater metagenome; Sea water
75525
75449
-
Val
GAC
[ENA]
¢þ
>WENV182568276
OJET01000024
[OJET] seawater metagenome; Sea water
76659
76734
+
Thr
TGT
[ENA]
¢þ
>WENV182568277
OJET01000024
[OJET] seawater metagenome; Sea water
76779
76863
+
Tyr
GTA
[ENA]
¢þ
>WENV182568278
OJET01000024
[OJET] seawater metagenome; Sea water
76890
76963
+
Gly
TCC
[ENA]
¢þ
>WENV182568279
OJET01000024
[OJET] seawater metagenome; Sea water
76979
77054
+
Thr
GGT
[ENA]
¢þ
>WENV182568266
OJET01000007
[OJET] seawater metagenome; Sea water
91852
91927
+
Arg
CCT
[ENA]
¢þ
>WENV182568268
OJET01000011
[OJET] seawater metagenome; Sea water
93138
93228
+
Ser
TGA
[ENA]
¢þ
>WENV182568264
OJET01000003
[OJET] seawater metagenome; Sea water
120249
120165
-
Leu
CAA
[ENA]
¢þ
>WENV182568270
OJET01000011
[OJET] seawater metagenome; Sea water
123077
123002
-
Val
TAC
[ENA]
¢þ
>WENV182568269
OJET01000011
[OJET] seawater metagenome; Sea water
123196
123121
-
Val
TAC
[ENA]
¢þ
>WENV182568265
OJET01000004
[OJET] seawater metagenome; Sea water
147464
147540
+
Arg
CCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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