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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJEU] seawater metagenome; Sea water
HIT:
130 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182568493
OJEU01006053
[OJEU] seawater metagenome; Sea water
60
150
+
Ser
TGA
[ENA]
¢þ
>WENV182568473
OJEU01002116
[OJEU] seawater metagenome; Sea water
63
148
+
Leu
GAG
[ENA]
¢þ
>WENV182568415
OJEU01000007
[OJEU] seawater metagenome; Sea water
70
140
+
Gly
TCC
[ENA]
¢þ
>WENV182568432
OJEU01000041
[OJEU] seawater metagenome; Sea water
84
2
-
Tyr
GTA
[ENA]
¢þ
>WENV182568489
OJEU01004921
[OJEU] seawater metagenome; Sea water
93
169
+
Ile2
CAT
[ENA]
¢þ
>WENV182568501
OJEU01007270
[OJEU] seawater metagenome; Sea water
95
23
-
Glu
CTC
[ENA]
¢þ
>WENV182568485
OJEU01004452
[OJEU] seawater metagenome; Sea water
118
191
+
Gln
TTG
[ENA]
¢þ
>WENV182568505
OJEU01008476
[OJEU] seawater metagenome; Sea water
148
72
-
Met
CAT
[ENA]
¢þ
>WENV182568431
OJEU01000041
[OJEU] seawater metagenome; Sea water
170
97
-
Gly
GCC
[ENA]
¢þ
>WENV182568498
OJEU01006976
[OJEU] seawater metagenome; Sea water
179
269
+
Ser
GCT
[ENA]
¢þ
>WENV182568503
OJEU01007837
[OJEU] seawater metagenome; Sea water
195
119
-
Met
CAT
[ENA]
¢þ
>WENV182568502
OJEU01007276
[OJEU] seawater metagenome; Sea water
219
308
+
Ser
GGA
[ENA]
¢þ
>WENV182568474
OJEU01002131
[OJEU] seawater metagenome; Sea water
255
182
-
Trp
CCA
[ENA]
¢þ
>WENV182568491
OJEU01005490
[OJEU] seawater metagenome; Sea water
267
350
+
Leu
CAA
[ENA]
¢þ
>WENV182568460
OJEU01001201
[OJEU] seawater metagenome; Sea water
271
347
+
Ile
GAT
[ENA]
¢þ
>WENV182568495
OJEU01006163
[OJEU] seawater metagenome; Sea water
306
232
-
Phe
GAA
[ENA]
¢þ
>WENV182568430
OJEU01000041
[OJEU] seawater metagenome; Sea water
311
238
-
Gln
TTG
[ENA]
¢þ
>WENV182568504
OJEU01008329
[OJEU] seawater metagenome; Sea water
320
393
+
Lys
CTT
[ENA]
¢þ
>WENV182568507
OJEU01008788
[OJEU] seawater metagenome; Sea water
351
427
+
Arg
CCT
[ENA]
¢þ
>WENV182568461
OJEU01001201
[OJEU] seawater metagenome; Sea water
359
434
+
Ala
TGC
[ENA]
¢þ
>WENV182568492
OJEU01005847
[OJEU] seawater metagenome; Sea water
359
434
+
Lys
TTT
[ENA]
¢þ
>WENV182568486
OJEU01004576
[OJEU] seawater metagenome; Sea water
362
277
-
Ser
GCT
[ENA]
¢þ
>WENV182568497
OJEU01006699
[OJEU] seawater metagenome; Sea water
367
293
-
Val
GAC
[ENA]
¢þ
>WENV182568484
OJEU01004413
[OJEU] seawater metagenome; Sea water
387
296
-
Ser
GCT
[ENA]
¢þ
>WENV182568509
OJEU01008998
[OJEU] seawater metagenome; Sea water
387
472
+
Tyr
GTA
[ENA]
¢þ
>WENV182568508
OJEU01008794
[OJEU] seawater metagenome; Sea water
398
474
+
fMet
CAT
[ENA]
¢þ
>WENV182568506
OJEU01008514
[OJEU] seawater metagenome; Sea water
422
498
+
fMet
CAT
[ENA]
¢þ
>WENV182568499
OJEU01007070
[OJEU] seawater metagenome; Sea water
439
363
-
Pro
GGG
[ENA]
¢þ
>WENV182568496
OJEU01006657
[OJEU] seawater metagenome; Sea water
450
361
-
Ser
TGA
[ENA]
¢þ
>WENV182568475
OJEU01002332
[OJEU] seawater metagenome; Sea water
458
383
-
Trp
CCA
[ENA]
¢þ
>WENV182568500
OJEU01007153
[OJEU] seawater metagenome; Sea water
469
545
+
Pro
TGG
[ENA]
¢þ
>WENV182568472
OJEU01002114
[OJEU] seawater metagenome; Sea water
476
392
-
Leu
CAA
[ENA]
¢þ
>WENV182568494
OJEU01006133
[OJEU] seawater metagenome; Sea water
495
422
-
Thr
AGT
[ENA]
¢þ
>WENV182568466
OJEU01001467
[OJEU] seawater metagenome; Sea water
495
569
+
Gly
GCC
[ENA]
¢þ
>WENV182568488
OJEU01004799
[OJEU] seawater metagenome; Sea water
502
429
-
Gly
GCC
[ENA]
¢þ
>WENV182568487
OJEU01004793
[OJEU] seawater metagenome; Sea water
503
578
+
Ala
GGC
[ENA]
¢þ
>WENV182568452
OJEU01000706
[OJEU] seawater metagenome; Sea water
508
583
+
Glu
TTC
[ENA]
¢þ
>WENV182568480
OJEU01002615
[OJEU] seawater metagenome; Sea water
540
617
+
Arg
CCG
[ENA]
¢þ
>WENV182568479
OJEU01002507
[OJEU] seawater metagenome; Sea water
548
474
-
Asp
GTC
[ENA]
¢þ
>WENV182568490
OJEU01005090
[OJEU] seawater metagenome; Sea water
550
625
+
Ile2
CAT
[ENA]
¢þ
>WENV182568457
OJEU01001084
[OJEU] seawater metagenome; Sea water
556
641
+
Leu
TAA
[ENA]
¢þ
>WENV182568482
OJEU01003051
[OJEU] seawater metagenome; Sea water
636
712
+
Pro
GGG
[ENA]
¢þ
>WENV182568478
OJEU01002482
[OJEU] seawater metagenome; Sea water
651
721
+
Gly
TCC
[ENA]
¢þ
>WENV182568453
OJEU01000706
[OJEU] seawater metagenome; Sea water
695
770
+
Gly
GCC
[ENA]
¢þ
>WENV182568463
OJEU01001365
[OJEU] seawater metagenome; Sea water
733
823
+
Ser
TGA
[ENA]
¢þ
>WENV182568483
OJEU01003289
[OJEU] seawater metagenome; Sea water
744
817
+
Cys
GCA
[ENA]
¢þ
>WENV182568454
OJEU01000706
[OJEU] seawater metagenome; Sea water
777
850
+
Cys
GCA
[ENA]
¢þ
>WENV182568467
OJEU01001467
[OJEU] seawater metagenome; Sea water
779
854
+
Thr
TGT
[ENA]
¢þ
>WENV182568443
OJEU01000243
[OJEU] seawater metagenome; Sea water
789
713
-
Arg
TCG
[ENA]
¢þ
>WENV182568477
OJEU01002412
[OJEU] seawater metagenome; Sea water
837
763
-
His
GTG
[ENA]
¢þ
>WENV182568465
OJEU01001396
[OJEU] seawater metagenome; Sea water
848
924
+
Arg
ACG
[ENA]
¢þ
>WENV182568481
OJEU01002931
[OJEU] seawater metagenome; Sea water
862
787
-
Lys
TTT
[ENA]
¢þ
>WENV182568468
OJEU01001467
[OJEU] seawater metagenome; Sea water
923
1008
+
Tyr
GTA
[ENA]
¢þ
>WENV182568464
OJEU01001365
[OJEU] seawater metagenome; Sea water
931
1006
+
Lys
TTT
[ENA]
¢þ
>WENV182568455
OJEU01000824
[OJEU] seawater metagenome; Sea water
972
1046
+
Gln
TTG
[ENA]
¢þ
>WENV182568476
OJEU01002410
[OJEU] seawater metagenome; Sea water
1021
946
-
Lys
TTT
[ENA]
¢þ
>WENV182568471
OJEU01001534
[OJEU] seawater metagenome; Sea water
1049
974
-
Ala
TGC
[ENA]
¢þ
>WENV182568469
OJEU01001467
[OJEU] seawater metagenome; Sea water
1049
1122
+
Gly
TCC
[ENA]
¢þ
>WENV182568458
OJEU01001153
[OJEU] seawater metagenome; Sea water
1086
1161
+
Val
TAC
[ENA]
¢þ
>WENV182568450
OJEU01000517
[OJEU] seawater metagenome; Sea water
1089
1002
-
Ser
GGA
[ENA]
¢þ
>WENV182568470
OJEU01001534
[OJEU] seawater metagenome; Sea water
1147
1071
-
Ile
GAT
[ENA]
¢þ
>WENV182568435
OJEU01000042
[OJEU] seawater metagenome; Sea water
1190
1117
-
fMet
CAT
[ENA]
¢þ
>WENV182568459
OJEU01001153
[OJEU] seawater metagenome; Sea water
1191
1267
+
Asp
GTC
[ENA]
¢þ
>WENV182568445
OJEU01000378
[OJEU] seawater metagenome; Sea water
1373
1292
-
Leu
TAA
[ENA]
¢þ
>WENV182568462
OJEU01001283
[OJEU] seawater metagenome; Sea water
1426
1351
-
Asn
GTT
[ENA]
¢þ
>WENV182568436
OJEU01000079
[OJEU] seawater metagenome; Sea water
1502
1426
-
Arg
TCT
[ENA]
¢þ
>WENV182568456
OJEU01000976
[OJEU] seawater metagenome; Sea water
1647
1722
+
Phe
GAA
[ENA]
¢þ
>WENV182568428
OJEU01000023
[OJEU] seawater metagenome; Sea water
1790
1863
+
Val
TAC
[ENA]
¢þ
>WENV182568446
OJEU01000442
[OJEU] seawater metagenome; Sea water
2028
2103
+
Thr
TGT
[ENA]
¢þ
>WENV182568451
OJEU01000688
[OJEU] seawater metagenome; Sea water
2084
2008
-
Ala
TGC
[ENA]
¢þ
>WENV182568447
OJEU01000442
[OJEU] seawater metagenome; Sea water
2126
2209
+
Tyr
GTA
[ENA]
¢þ
>WENV182568448
OJEU01000442
[OJEU] seawater metagenome; Sea water
2216
2290
+
Gly
TCC
[ENA]
¢þ
>WENV182568449
OJEU01000442
[OJEU] seawater metagenome; Sea water
2360
2434
+
Thr
GGT
[ENA]
¢þ
>WENV182568442
OJEU01000163
[OJEU] seawater metagenome; Sea water
2751
2826
+
Trp
CCA
[ENA]
¢þ
>WENV182568444
OJEU01000378
[OJEU] seawater metagenome; Sea water
2841
2760
-
Leu
TAA
[ENA]
¢þ
>WENV182568419
OJEU01000014
[OJEU] seawater metagenome; Sea water
2862
2938
+
Arg
TCT
[ENA]
¢þ
>WENV182568420
OJEU01000014
[OJEU] seawater metagenome; Sea water
2953
3036
+
Leu
TAA
[ENA]
¢þ
>WENV182568421
OJEU01000014
[OJEU] seawater metagenome; Sea water
3046
3120
+
Ile2
CAT
[ENA]
¢þ
>WENV182568422
OJEU01000014
[OJEU] seawater metagenome; Sea water
3310
3385
+
Asn
GTT
[ENA]
¢þ
>WENV182568418
OJEU01000007
[OJEU] seawater metagenome; Sea water
3363
3287
-
Asp
GTC
[ENA]
¢þ
>WENV182568423
OJEU01000014
[OJEU] seawater metagenome; Sea water
3392
3481
+
Ser
ACT
[ENA]
¢þ
>WENV182568424
OJEU01000014
[OJEU] seawater metagenome; Sea water
3488
3562
+
Gln
TTG
[ENA]
¢þ
>WENV182568425
OJEU01000014
[OJEU] seawater metagenome; Sea water
3663
3738
+
Thr
TGT
[ENA]
¢þ
>WENV182568387
OJEU01000004
[OJEU] seawater metagenome; Sea water
3814
3887
+
Ile
GAT
[ENA]
¢þ
>WENV182568426
OJEU01000014
[OJEU] seawater metagenome; Sea water
3843
3916
+
Gly
TCC
[ENA]
¢þ
>WENV182568427
OJEU01000014
[OJEU] seawater metagenome; Sea water
3925
4008
+
Leu
TAG
[ENA]
¢þ
>WENV182568433
OJEU01000042
[OJEU] seawater metagenome; Sea water
4066
4151
+
Ser
TGA
[ENA]
¢þ
>WENV182568413
OJEU01000005
[OJEU] seawater metagenome; Sea water
4071
3998
-
Trp
CCA
[ENA]
¢þ
>WENV182568414
OJEU01000006
[OJEU] seawater metagenome; Sea water
4736
4663
-
Trp
CCA
[ENA]
¢þ
>WENV182568441
OJEU01000121
[OJEU] seawater metagenome; Sea water
4808
4733
-
Ala
TGC
[ENA]
¢þ
>WENV182568438
OJEU01000082
[OJEU] seawater metagenome; Sea water
4926
4852
-
Ala
TGC
[ENA]
¢þ
>WENV182568437
OJEU01000082
[OJEU] seawater metagenome; Sea water
5002
4929
-
Ile
GAT
[ENA]
¢þ
>WENV182568440
OJEU01000121
[OJEU] seawater metagenome; Sea water
5019
4943
-
Ile
GAT
[ENA]
¢þ
>WENV182568434
OJEU01000042
[OJEU] seawater metagenome; Sea water
5170
5243
+
Pro
TGG
[ENA]
¢þ
>WENV182568439
OJEU01000095
[OJEU] seawater metagenome; Sea water
5315
5242
-
Lys
TTT
[ENA]
¢þ
>WENV182568429
OJEU01000041
[OJEU] seawater metagenome; Sea water
6210
6136
-
Thr
TGT
[ENA]
¢þ
>WENV182568388
OJEU01000004
[OJEU] seawater metagenome; Sea water
7944
8019
+
Asp
GTC
[ENA]
¢þ
>WENV182568389
OJEU01000004
[OJEU] seawater metagenome; Sea water
12039
12113
+
Cys
GCA
[ENA]
¢þ
>WENV182568390
OJEU01000004
[OJEU] seawater metagenome; Sea water
12177
12250
+
fMet
CAT
[ENA]
¢þ
>WENV182568391
OJEU01000004
[OJEU] seawater metagenome; Sea water
12264
12355
+
Ser
GCT
[ENA]
¢þ
>WENV182568392
OJEU01000004
[OJEU] seawater metagenome; Sea water
12566
12639
+
Ile
GAT
[ENA]
¢þ
>WENV182568417
OJEU01000007
[OJEU] seawater metagenome; Sea water
12681
12608
-
Asn
GTT
[ENA]
¢þ
>WENV182568416
OJEU01000007
[OJEU] seawater metagenome; Sea water
15358
15434
+
Arg
ACG
[ENA]
¢þ
>WENV182568410
OJEU01000004
[OJEU] seawater metagenome; Sea water
15792
15716
-
Glu
TTC
[ENA]
¢þ
>WENV182568409
OJEU01000004
[OJEU] seawater metagenome; Sea water
17379
17307
-
Ala
TGC
[ENA]
¢þ
>WENV182568408
OJEU01000004
[OJEU] seawater metagenome; Sea water
19504
19418
-
Ser
TGA
[ENA]
¢þ
>WENV182568407
OJEU01000004
[OJEU] seawater metagenome; Sea water
19580
19510
-
Gly
TCC
[ENA]
¢þ
>WENV182568406
OJEU01000004
[OJEU] seawater metagenome; Sea water
19658
19586
-
Val
TAC
[ENA]
¢þ
>WENV182568412
OJEU01000005
[OJEU] seawater metagenome; Sea water
21330
21255
-
His
GTG
[ENA]
¢þ
>WENV182568405
OJEU01000004
[OJEU] seawater metagenome; Sea water
21780
21708
-
Phe
GAA
[ENA]
¢þ
>WENV182568404
OJEU01000004
[OJEU] seawater metagenome; Sea water
21870
21795
-
His
GTG
[ENA]
¢þ
>WENV182568403
OJEU01000004
[OJEU] seawater metagenome; Sea water
21946
21875
-
Gln
TTG
[ENA]
¢þ
>WENV182568402
OJEU01000004
[OJEU] seawater metagenome; Sea water
22025
21952
-
Lys
TTT
[ENA]
¢þ
>WENV182568401
OJEU01000004
[OJEU] seawater metagenome; Sea water
22105
22030
-
Asn
GTT
[ENA]
¢þ
>WENV182568411
OJEU01000005
[OJEU] seawater metagenome; Sea water
22900
22819
-
Leu
TAG
[ENA]
¢þ
>WENV182568380
OJEU01000003
[OJEU] seawater metagenome; Sea water
25624
25696
+
Phe
GAA
[ENA]
¢þ
>WENV182568381
OJEU01000003
[OJEU] seawater metagenome; Sea water
27582
27653
+
Met
CAT
[ENA]
¢þ
>WENV182568400
OJEU01000004
[OJEU] seawater metagenome; Sea water
28004
27932
-
Arg
TCT
[ENA]
¢þ
>WENV182568393
OJEU01000004
[OJEU] seawater metagenome; Sea water
28696
28777
+
Tyr
GTA
[ENA]
¢þ
>WENV182568399
OJEU01000004
[OJEU] seawater metagenome; Sea water
28857
28785
-
Trp
CCA
[ENA]
¢þ
>WENV182568398
OJEU01000004
[OJEU] seawater metagenome; Sea water
28938
28865
-
Met
CAT
[ENA]
¢þ
>WENV182568382
OJEU01000003
[OJEU] seawater metagenome; Sea water
30490
30562
+
Arg
TCT
[ENA]
¢þ
>WENV182568397
OJEU01000004
[OJEU] seawater metagenome; Sea water
30670
30597
-
Pro
TGG
[ENA]
¢þ
>WENV182568396
OJEU01000004
[OJEU] seawater metagenome; Sea water
32052
31965
-
Leu
TAG
[ENA]
¢þ
>WENV182568394
OJEU01000004
[OJEU] seawater metagenome; Sea water
32265
32338
+
Met
CAT
[ENA]
¢þ
>WENV182568395
OJEU01000004
[OJEU] seawater metagenome; Sea water
32342
32423
+
Leu
TAA
[ENA]
¢þ
>WENV182568383
OJEU01000003
[OJEU] seawater metagenome; Sea water
32560
32650
+
Ser
GCT
[ENA]
¢þ
>WENV182568384
OJEU01000003
[OJEU] seawater metagenome; Sea water
32674
32748
+
Arg
CCG
[ENA]
¢þ
>WENV182568385
OJEU01000003
[OJEU] seawater metagenome; Sea water
34004
34075
+
Cys
GCA
[ENA]
¢þ
>WENV182568386
OJEU01000003
[OJEU] seawater metagenome; Sea water
34085
34169
+
Leu
TAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK