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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJFJ] seawater metagenome; Sea water
HIT:
26 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182571437
OJFJ01002843
[OJFJ] seawater metagenome; Sea water
56
132
+
Ile
GAT
[ENA]
¢þ
>WENV182571429
OJFJ01000481
[OJFJ] seawater metagenome; Sea water
64
149
+
Leu
TAG
[ENA]
¢þ
>WENV182571435
OJFJ01002441
[OJFJ] seawater metagenome; Sea water
119
44
-
Thr
TGT
[ENA]
¢þ
>WENV182571428
OJFJ01000395
[OJFJ] seawater metagenome; Sea water
125
52
-
Gly
CCC
[ENA]
¢þ
>WENV182571423
OJFJ01000226
[OJFJ] seawater metagenome; Sea water
143
216
+
Gly
TCC
[ENA]
¢þ
>WENV182571434
OJFJ01001832
[OJFJ] seawater metagenome; Sea water
147
60
-
Ser
GGA
[ENA]
¢þ
>WENV182571438
OJFJ01002843
[OJFJ] seawater metagenome; Sea water
148
223
+
Ala
TGC
[ENA]
¢þ
>WENV182571422
OJFJ01000220
[OJFJ] seawater metagenome; Sea water
221
145
-
Ile2
CAT
[ENA]
¢þ
>WENV182571424
OJFJ01000226
[OJFJ] seawater metagenome; Sea water
233
307
+
Thr
GGT
[ENA]
¢þ
>WENV182571433
OJFJ01001832
[OJFJ] seawater metagenome; Sea water
302
215
-
Ser
CGA
[ENA]
¢þ
>WENV182571440
OJFJ01003728
[OJFJ] seawater metagenome; Sea water
343
428
+
Ser
TGA
[ENA]
¢þ
>WENV182571441
OJFJ01003802
[OJFJ] seawater metagenome; Sea water
435
524
+
Ser
GCT
[ENA]
¢þ
>WENV182571439
OJFJ01003108
[OJFJ] seawater metagenome; Sea water
522
450
-
Thr
GGT
[ENA]
¢þ
>WENV182571436
OJFJ01002534
[OJFJ] seawater metagenome; Sea water
664
588
-
Arg
ACG
[ENA]
¢þ
>WENV182571432
OJFJ01001752
[OJFJ] seawater metagenome; Sea water
733
808
+
Gly
GCC
[ENA]
¢þ
>WENV182571431
OJFJ01001053
[OJFJ] seawater metagenome; Sea water
782
707
-
Gln
TTG
[ENA]
¢þ
>WENV182571430
OJFJ01000727
[OJFJ] seawater metagenome; Sea water
805
730
-
Thr
GGT
[ENA]
¢þ
>WENV182571425
OJFJ01000226
[OJFJ] seawater metagenome; Sea water
1594
1669
+
Trp
CCA
[ENA]
¢þ
>WENV182571427
OJFJ01000374
[OJFJ] seawater metagenome; Sea water
1765
1839
+
Cys
GCA
[ENA]
¢þ
>WENV182571426
OJFJ01000268
[OJFJ] seawater metagenome; Sea water
2057
1983
-
Val
GAC
[ENA]
¢þ
>WENV182571417
OJFJ01000001
[OJFJ] seawater metagenome; Sea water
15611
15536
-
Trp
CCA
[ENA]
¢þ
>WENV182571421
OJFJ01000002
[OJFJ] seawater metagenome; Sea water
15812
15738
-
Thr
GGT
[ENA]
¢þ
>WENV182571420
OJFJ01000002
[OJFJ] seawater metagenome; Sea water
15899
15824
-
Gly
TCC
[ENA]
¢þ
>WENV182571419
OJFJ01000002
[OJFJ] seawater metagenome; Sea water
16039
15955
-
Tyr
GTA
[ENA]
¢þ
>WENV182571418
OJFJ01000002
[OJFJ] seawater metagenome; Sea water
16160
16085
-
Thr
TGT
[ENA]
¢þ
>WENV182571416
OJFJ01000001
[OJFJ] seawater metagenome; Sea water
17100
17025
-
Thr
GGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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