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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJFZ] seawater metagenome; Sea water
HIT:
55 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182576838
OJFZ01000212
[OJFZ] seawater metagenome; Sea water
4
80
+
fMet
CAT
[ENA]
¢þ
>WENV182576880
OJFZ01003856
[OJFZ] seawater metagenome; Sea water
50
126
+
Pro
GGG
[ENA]
¢þ
>WENV182576855
OJFZ01000755
[OJFZ] seawater metagenome; Sea water
51
126
+
Thr
TGT
[ENA]
¢þ
>WENV182576841
OJFZ01000675
[OJFZ] seawater metagenome; Sea water
55
131
+
Pro
TGG
[ENA]
¢þ
>WENV182576871
OJFZ01001724
[OJFZ] seawater metagenome; Sea water
109
35
-
Arg
ACG
[ENA]
¢þ
>WENV182576840
OJFZ01000377
[OJFZ] seawater metagenome; Sea water
121
48
-
Ile2
CAT
[ENA]
¢þ
>WENV182576861
OJFZ01001000
[OJFZ] seawater metagenome; Sea water
125
50
-
Asn
GTT
[ENA]
¢þ
>WENV182576856
OJFZ01000755
[OJFZ] seawater metagenome; Sea water
134
218
+
Tyr
GTA
[ENA]
¢þ
>WENV182576859
OJFZ01000900
[OJFZ] seawater metagenome; Sea water
140
216
+
Trp
CCA
[ENA]
¢þ
>WENV182576866
OJFZ01001535
[OJFZ] seawater metagenome; Sea water
154
79
-
Ala
GGC
[ENA]
¢þ
>WENV182576842
OJFZ01000675
[OJFZ] seawater metagenome; Sea water
158
234
+
Arg
TCT
[ENA]
¢þ
>WENV182576885
OJFZ01005102
[OJFZ] seawater metagenome; Sea water
175
100
-
Ala
TGC
[ENA]
¢þ
>WENV182576857
OJFZ01000755
[OJFZ] seawater metagenome; Sea water
252
326
+
Gly
TCC
[ENA]
¢þ
>WENV182576843
OJFZ01000675
[OJFZ] seawater metagenome; Sea water
267
342
+
His
GTG
[ENA]
¢þ
>WENV182576844
OJFZ01000721
[OJFZ] seawater metagenome; Sea water
278
366
+
Asn
GTT
[ENA]
¢þ
>WENV182576867
OJFZ01001654
[OJFZ] seawater metagenome; Sea water
279
354
+
Thr
TGT
[ENA]
¢þ
>WENV182576839
OJFZ01000355
[OJFZ] seawater metagenome; Sea water
282
356
+
Gln
TTG
[ENA]
¢þ
>WENV182576862
OJFZ01001084
[OJFZ] seawater metagenome; Sea water
288
201
-
Ser
GGA
[ENA]
¢þ
>WENV182576874
OJFZ01002705
[OJFZ] seawater metagenome; Sea water
319
244
-
Gly
GCC
[ENA]
¢þ
>WENV182576858
OJFZ01000755
[OJFZ] seawater metagenome; Sea water
334
409
+
Thr
GGT
[ENA]
¢þ
>WENV182576860
OJFZ01000919
[OJFZ] seawater metagenome; Sea water
358
433
+
Gln
TTG
[ENA]
¢þ
>WENV182576868
OJFZ01001654
[OJFZ] seawater metagenome; Sea water
358
451
+
Ser
TGA
[ENA]
¢þ
>WENV182576884
OJFZ01005102
[OJFZ] seawater metagenome; Sea water
365
289
-
Ile
GAT
[ENA]
¢þ
>WENV182576845
OJFZ01000721
[OJFZ] seawater metagenome; Sea water
417
493
+
Asp
GTC
[ENA]
¢þ
>WENV182576834
OJFZ01000043
[OJFZ] seawater metagenome; Sea water
427
512
+
Leu
GAG
[ENA]
¢þ
>WENV182576883
OJFZ01005102
[OJFZ] seawater metagenome; Sea water
459
384
-
Ala
TGC
[ENA]
¢þ
>WENV182576881
OJFZ01004194
[OJFZ] seawater metagenome; Sea water
528
452
-
Trp
CCA
[ENA]
¢þ
>WENV182576846
OJFZ01000721
[OJFZ] seawater metagenome; Sea water
551
636
+
Leu
TAG
[ENA]
¢þ
>WENV182576878
OJFZ01003415
[OJFZ] seawater metagenome; Sea water
552
477
-
Trp
CCA
[ENA]
¢þ
>WENV182576882
OJFZ01004410
[OJFZ] seawater metagenome; Sea water
553
477
-
Trp
CCA
[ENA]
¢þ
>WENV182576876
OJFZ01002939
[OJFZ] seawater metagenome; Sea water
560
485
-
Ala
TGC
[ENA]
¢þ
>WENV182576879
OJFZ01003429
[OJFZ] seawater metagenome; Sea water
575
662
+
Ser
GGA
[ENA]
¢þ
>WENV182576877
OJFZ01002948
[OJFZ] seawater metagenome; Sea water
627
551
-
Ile2
CAT
[ENA]
¢þ
>WENV182576869
OJFZ01001654
[OJFZ] seawater metagenome; Sea water
628
722
+
Ser
GGA
[ENA]
¢þ
>WENV182576847
OJFZ01000721
[OJFZ] seawater metagenome; Sea water
653
728
+
Gln
TTG
[ENA]
¢þ
>WENV182576875
OJFZ01002939
[OJFZ] seawater metagenome; Sea water
654
578
-
Ile
GAT
[ENA]
¢þ
>WENV182576848
OJFZ01000721
[OJFZ] seawater metagenome; Sea water
735
811
+
Ile
GAT
[ENA]
¢þ
>WENV182576849
OJFZ01000721
[OJFZ] seawater metagenome; Sea water
816
892
+
Met
CAT
[ENA]
¢þ
>WENV182576836
OJFZ01000148
[OJFZ] seawater metagenome; Sea water
864
939
+
Trp
CCA
[ENA]
¢þ
>WENV182576873
OJFZ01001784
[OJFZ] seawater metagenome; Sea water
877
792
-
Leu
TAA
[ENA]
¢þ
>WENV182576850
OJFZ01000721
[OJFZ] seawater metagenome; Sea water
926
1002
+
Lys
TTT
[ENA]
¢þ
>WENV182576865
OJFZ01001527
[OJFZ] seawater metagenome; Sea water
985
910
-
Gln
TTG
[ENA]
¢þ
>WENV182576870
OJFZ01001654
[OJFZ] seawater metagenome; Sea water
986
1061
+
Met
CAT
[ENA]
¢þ
>WENV182576872
OJFZ01001784
[OJFZ] seawater metagenome; Sea water
1001
928
-
Cys
GCA
[ENA]
¢þ
>WENV182576851
OJFZ01000721
[OJFZ] seawater metagenome; Sea water
1045
1118
+
Gly
TCC
[ENA]
¢þ
>WENV182576864
OJFZ01001527
[OJFZ] seawater metagenome; Sea water
1074
990
-
Leu
TAG
[ENA]
¢þ
>WENV182576863
OJFZ01001527
[OJFZ] seawater metagenome; Sea water
1157
1082
-
His
GTG
[ENA]
¢þ
>WENV182576852
OJFZ01000721
[OJFZ] seawater metagenome; Sea water
1188
1263
+
His
GTG
[ENA]
¢þ
>WENV182576833
OJFZ01000012
[OJFZ] seawater metagenome; Sea water
1231
1316
+
Leu
GAG
[ENA]
¢þ
>WENV182576853
OJFZ01000721
[OJFZ] seawater metagenome; Sea water
1270
1346
+
Pro
TGG
[ENA]
¢þ
>WENV182576854
OJFZ01000721
[OJFZ] seawater metagenome; Sea water
1558
1644
+
Glu
TTC
[ENA]
¢þ
>WENV182576837
OJFZ01000167
[OJFZ] seawater metagenome; Sea water
2927
3012
+
Leu
GAG
[ENA]
¢þ
>WENV182576835
OJFZ01000044
[OJFZ] seawater metagenome; Sea water
4544
4620
+
Trp
CCA
[ENA]
¢þ
>WENV182576831
OJFZ01000004
[OJFZ] seawater metagenome; Sea water
4570
4645
+
Trp
CCA
[ENA]
¢þ
>WENV182576832
OJFZ01000005
[OJFZ] seawater metagenome; Sea water
7782
7707
-
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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