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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJGL] seawater metagenome; Sea water
HIT:
55 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182577877
OJGL01001733
[OJGL] seawater metagenome; Sea water
38
113
+
Gln
TTG
[ENA]
¢þ
>WENV182577882
OJGL01002541
[OJGL] seawater metagenome; Sea water
41
117
+
Pro
TGG
[ENA]
¢þ
>WENV182577854
OJGL01000062
[OJGL] seawater metagenome; Sea water
59
135
+
fMet
CAT
[ENA]
¢þ
>WENV182577850
OJGL01000011
[OJGL] seawater metagenome; Sea water
68
151
+
Tyr
GTA
[ENA]
¢þ
>WENV182577888
OJGL01003060
[OJGL] seawater metagenome; Sea water
69
155
+
Leu
CAG
[ENA]
¢þ
>WENV182577878
OJGL01001852
[OJGL] seawater metagenome; Sea water
81
167
+
Leu
CAA
[ENA]
¢þ
>WENV182577864
OJGL01000512
[OJGL] seawater metagenome; Sea water
82
157
+
His
GTG
[ENA]
¢þ
>WENV182577871
OJGL01001105
[OJGL] seawater metagenome; Sea water
99
12
-
Ser
GGA
[ENA]
¢þ
>WENV182577900
OJGL01005279
[OJGL] seawater metagenome; Sea water
125
51
-
Thr
GGT
[ENA]
¢þ
>WENV182577873
OJGL01001381
[OJGL] seawater metagenome; Sea water
130
206
+
Pro
TGG
[ENA]
¢þ
>WENV182577883
OJGL01002541
[OJGL] seawater metagenome; Sea water
143
219
+
Arg
TCT
[ENA]
¢þ
>WENV182577855
OJGL01000199
[OJGL] seawater metagenome; Sea water
161
234
+
Gly
TCC
[ENA]
¢þ
>WENV182577896
OJGL01004045
[OJGL] seawater metagenome; Sea water
182
107
-
Thr
GGT
[ENA]
¢þ
>WENV182577851
OJGL01000011
[OJGL] seawater metagenome; Sea water
194
267
+
Gly
TCC
[ENA]
¢þ
>WENV182577874
OJGL01001381
[OJGL] seawater metagenome; Sea water
225
300
+
His
GTG
[ENA]
¢þ
>WENV182577881
OJGL01002420
[OJGL] seawater metagenome; Sea water
234
309
+
Phe
GAA
[ENA]
¢þ
>WENV182577902
OJGL01005424
[OJGL] seawater metagenome; Sea water
250
175
-
His
GTG
[ENA]
¢þ
>WENV182577895
OJGL01004045
[OJGL] seawater metagenome; Sea water
275
201
-
Gly
TCC
[ENA]
¢þ
>WENV182577852
OJGL01000011
[OJGL] seawater metagenome; Sea water
276
351
+
Thr
GGT
[ENA]
¢þ
>WENV182577856
OJGL01000199
[OJGL] seawater metagenome; Sea water
279
354
+
Thr
GGT
[ENA]
¢þ
>WENV182577858
OJGL01000243
[OJGL] seawater metagenome; Sea water
296
370
+
Gln
TTG
[ENA]
¢þ
>WENV182577865
OJGL01000562
[OJGL] seawater metagenome; Sea water
298
223
-
Trp
CCA
[ENA]
¢þ
>WENV182577872
OJGL01001108
[OJGL] seawater metagenome; Sea water
317
391
+
Gln
TTG
[ENA]
¢þ
>WENV182577884
OJGL01002541
[OJGL] seawater metagenome; Sea water
317
392
+
His
GTG
[ENA]
¢þ
>WENV182577879
OJGL01001854
[OJGL] seawater metagenome; Sea water
347
262
-
Leu
GAG
[ENA]
¢þ
>WENV182577894
OJGL01004045
[OJGL] seawater metagenome; Sea water
369
286
-
Tyr
GTA
[ENA]
¢þ
>WENV182577899
OJGL01005279
[OJGL] seawater metagenome; Sea water
371
298
-
Gly
TCC
[ENA]
¢þ
>WENV182577892
OJGL01003727
[OJGL] seawater metagenome; Sea water
379
463
+
Tyr
GTA
[ENA]
¢þ
>WENV182577885
OJGL01002541
[OJGL] seawater metagenome; Sea water
400
484
+
Leu
TAG
[ENA]
¢þ
>WENV182577901
OJGL01005424
[OJGL] seawater metagenome; Sea water
421
345
-
Arg
TCT
[ENA]
¢þ
>WENV182577891
OJGL01003639
[OJGL] seawater metagenome; Sea water
432
357
-
Ala
TGC
[ENA]
¢þ
>WENV182577893
OJGL01004045
[OJGL] seawater metagenome; Sea water
485
410
-
Thr
TGT
[ENA]
¢þ
>WENV182577886
OJGL01002541
[OJGL] seawater metagenome; Sea water
489
564
+
Gln
TTG
[ENA]
¢þ
>WENV182577898
OJGL01005279
[OJGL] seawater metagenome; Sea water
490
407
-
Tyr
GTA
[ENA]
¢þ
>WENV182577897
OJGL01004111
[OJGL] seawater metagenome; Sea water
495
420
-
Ala
TGC
[ENA]
¢þ
>WENV182577890
OJGL01003639
[OJGL] seawater metagenome; Sea water
526
450
-
Ile
GAT
[ENA]
¢þ
>WENV182577889
OJGL01003309
[OJGL] seawater metagenome; Sea water
558
633
+
Ile2
CAT
[ENA]
¢þ
>WENV182577887
OJGL01002541
[OJGL] seawater metagenome; Sea water
606
681
+
Gln
TTG
[ENA]
¢þ
>WENV182577880
OJGL01001966
[OJGL] seawater metagenome; Sea water
646
720
+
Arg
CCT
[ENA]
¢þ
>WENV182577876
OJGL01001669
[OJGL] seawater metagenome; Sea water
876
800
-
Pro
TGG
[ENA]
¢þ
>WENV182577875
OJGL01001534
[OJGL] seawater metagenome; Sea water
966
890
-
Val
GAC
[ENA]
¢þ
>WENV182577870
OJGL01000992
[OJGL] seawater metagenome; Sea water
1152
1228
+
Arg
ACG
[ENA]
¢þ
>WENV182577869
OJGL01000930
[OJGL] seawater metagenome; Sea water
1155
1080
-
Thr
GGT
[ENA]
¢þ
>WENV182577866
OJGL01000639
[OJGL] seawater metagenome; Sea water
1181
1106
-
Gln
TTG
[ENA]
¢þ
>WENV182577863
OJGL01000478
[OJGL] seawater metagenome; Sea water
1224
1149
-
Thr
GGT
[ENA]
¢þ
>WENV182577868
OJGL01000930
[OJGL] seawater metagenome; Sea water
1236
1162
-
Gly
TCC
[ENA]
¢þ
>WENV182577862
OJGL01000478
[OJGL] seawater metagenome; Sea water
1306
1232
-
Gly
TCC
[ENA]
¢þ
>WENV182577867
OJGL01000806
[OJGL] seawater metagenome; Sea water
1307
1382
+
Asn
GTT
[ENA]
¢þ
>WENV182577861
OJGL01000478
[OJGL] seawater metagenome; Sea water
1424
1340
-
Tyr
GTA
[ENA]
¢þ
>WENV182577860
OJGL01000478
[OJGL] seawater metagenome; Sea water
1507
1432
-
Thr
TGT
[ENA]
¢þ
>WENV182577859
OJGL01000478
[OJGL] seawater metagenome; Sea water
1696
1621
-
Phe
GAA
[ENA]
¢þ
>WENV182577857
OJGL01000199
[OJGL] seawater metagenome; Sea water
1768
1843
+
Trp
CCA
[ENA]
¢þ
>WENV182577853
OJGL01000011
[OJGL] seawater metagenome; Sea water
2230
2305
+
Trp
CCA
[ENA]
¢þ
>WENV182577849
OJGL01000006
[OJGL] seawater metagenome; Sea water
5205
5281
+
Asp
GTC
[ENA]
¢þ
>WENV182577848
OJGL01000002
[OJGL] seawater metagenome; Sea water
7339
7414
+
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK