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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJHP] seawater metagenome; Sea water
HIT:
42 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182588239
OJHP01003288
[OJHP] seawater metagenome; Sea water
34
110
+
Pro
TGG
[ENA]
¢þ
>WENV182588230
OJHP01002744
[OJHP] seawater metagenome; Sea water
45
130
+
Leu
TAA
[ENA]
¢þ
>WENV182588207
OJHP01000436
[OJHP] seawater metagenome; Sea water
66
142
+
Pro
TGG
[ENA]
¢þ
>WENV182588234
OJHP01002875
[OJHP] seawater metagenome; Sea water
81
165
+
Tyr
GTA
[ENA]
¢þ
>WENV182588215
OJHP01001798
[OJHP] seawater metagenome; Sea water
113
189
+
Trp
CCA
[ENA]
¢þ
>WENV182588223
OJHP01001887
[OJHP] seawater metagenome; Sea water
152
68
-
Leu
TAG
[ENA]
¢þ
>WENV182588240
OJHP01003288
[OJHP] seawater metagenome; Sea water
153
229
+
Arg
TCT
[ENA]
¢þ
>WENV182588206
OJHP01000353
[OJHP] seawater metagenome; Sea water
157
83
-
Ala
TGC
[ENA]
¢þ
>WENV182588231
OJHP01002744
[OJHP] seawater metagenome; Sea water
159
234
+
Thr
GGT
[ENA]
¢þ
>WENV182588208
OJHP01000436
[OJHP] seawater metagenome; Sea water
169
245
+
Arg
TCT
[ENA]
¢þ
>WENV182588238
OJHP01003207
[OJHP] seawater metagenome; Sea water
199
123
-
Arg
ACG
[ENA]
¢þ
>WENV182588235
OJHP01002875
[OJHP] seawater metagenome; Sea water
199
273
+
Gly
TCC
[ENA]
¢þ
>WENV182588233
OJHP01002765
[OJHP] seawater metagenome; Sea water
222
146
-
Ile
GAT
[ENA]
¢þ
>WENV182588222
OJHP01001887
[OJHP] seawater metagenome; Sea water
235
160
-
His
GTG
[ENA]
¢þ
>WENV182588229
OJHP01002730
[OJHP] seawater metagenome; Sea water
237
313
+
fMet
CAT
[ENA]
¢þ
>WENV182588232
OJHP01002744
[OJHP] seawater metagenome; Sea water
241
316
+
Thr
TGT
[ENA]
¢þ
>WENV182588241
OJHP01003288
[OJHP] seawater metagenome; Sea water
261
336
+
His
GTG
[ENA]
¢þ
>WENV182588209
OJHP01000436
[OJHP] seawater metagenome; Sea water
278
353
+
His
GTG
[ENA]
¢þ
>WENV182588236
OJHP01002875
[OJHP] seawater metagenome; Sea water
281
356
+
Thr
GGT
[ENA]
¢þ
>WENV182588219
OJHP01001870
[OJHP] seawater metagenome; Sea water
286
211
-
Thr
GGT
[ENA]
¢þ
>WENV182588228
OJHP01002170
[OJHP] seawater metagenome; Sea water
321
246
-
Thr
GGT
[ENA]
¢þ
>WENV182588205
OJHP01000353
[OJHP] seawater metagenome; Sea water
334
260
-
Ile
GAT
[ENA]
¢þ
>WENV182588237
OJHP01003207
[OJHP] seawater metagenome; Sea water
371
280
-
Ser
GCT
[ENA]
¢þ
>WENV182588242
OJHP01003288
[OJHP] seawater metagenome; Sea water
383
459
+
Pro
TGG
[ENA]
¢þ
>WENV182588218
OJHP01001870
[OJHP] seawater metagenome; Sea water
404
331
-
Gly
TCC
[ENA]
¢þ
>WENV182588221
OJHP01001887
[OJHP] seawater metagenome; Sea water
409
333
-
Arg
TCT
[ENA]
¢þ
>WENV182588227
OJHP01002170
[OJHP] seawater metagenome; Sea water
412
338
-
Gly
TCC
[ENA]
¢þ
>WENV182588214
OJHP01001473
[OJHP] seawater metagenome; Sea water
443
370
-
Lys
CTT
[ENA]
¢þ
>WENV182588210
OJHP01000537
[OJHP] seawater metagenome; Sea water
453
528
+
Trp
CCA
[ENA]
¢þ
>WENV182588220
OJHP01001887
[OJHP] seawater metagenome; Sea water
511
435
-
Pro
TGG
[ENA]
¢þ
>WENV182588226
OJHP01002170
[OJHP] seawater metagenome; Sea water
561
477
-
Tyr
GTA
[ENA]
¢þ
>WENV182588217
OJHP01001870
[OJHP] seawater metagenome; Sea water
566
483
-
Tyr
GTA
[ENA]
¢þ
>WENV182588224
OJHP01001971
[OJHP] seawater metagenome; Sea water
613
689
+
Arg
GCG
[ENA]
¢þ
>WENV182588225
OJHP01002170
[OJHP] seawater metagenome; Sea water
697
622
-
Thr
TGT
[ENA]
¢þ
>WENV182588216
OJHP01001870
[OJHP] seawater metagenome; Sea water
719
644
-
Thr
TGT
[ENA]
¢þ
>WENV182588213
OJHP01000725
[OJHP] seawater metagenome; Sea water
1017
942
-
Gln
TTG
[ENA]
¢þ
>WENV182588212
OJHP01000674
[OJHP] seawater metagenome; Sea water
1310
1385
+
Asn
GTT
[ENA]
¢þ
>WENV182588211
OJHP01000625
[OJHP] seawater metagenome; Sea water
1332
1257
-
Trp
CCA
[ENA]
¢þ
>WENV182588203
OJHP01000012
[OJHP] seawater metagenome; Sea water
2184
2108
-
Asp
GTC
[ENA]
¢þ
>WENV182588204
OJHP01000080
[OJHP] seawater metagenome; Sea water
3680
3769
+
Ser
GCT
[ENA]
¢þ
>WENV182588202
OJHP01000003
[OJHP] seawater metagenome; Sea water
9118
9042
-
fMet
CAT
[ENA]
¢þ
>WENV182588201
OJHP01000003
[OJHP] seawater metagenome; Sea water
9414
9329
-
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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