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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJHT] seawater metagenome; Sea water
HIT:
137 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182588492
OJHT01007935
[OJHT] seawater metagenome; Sea water
3
77
+
Gln
TTG
[ENA]
¢þ
>WENV182588389
OJHT01000183
[OJHT] seawater metagenome; Sea water
9
85
+
Val
TAC
[ENA]
¢þ
>WENV182588453
OJHT01003696
[OJHT] seawater metagenome; Sea water
56
130
+
Val
GAC
[ENA]
¢þ
>WENV182588418
OJHT01001235
[OJHT] seawater metagenome; Sea water
67
142
+
Ala
TGC
[ENA]
¢þ
>WENV182588482
OJHT01006813
[OJHT] seawater metagenome; Sea water
68
142
+
Gln
TTG
[ENA]
¢þ
>WENV182588457
OJHT01003927
[OJHT] seawater metagenome; Sea water
71
146
+
Ala
TGC
[ENA]
¢þ
>WENV182588480
OJHT01006751
[OJHT] seawater metagenome; Sea water
82
156
+
Trp
CCA
[ENA]
¢þ
>WENV182588476
OJHT01006210
[OJHT] seawater metagenome; Sea water
92
168
+
Ile
GAT
[ENA]
¢þ
>WENV182588362
OJHT01000008
[OJHT] seawater metagenome; Sea water
95
171
+
Ile2
CAT
[ENA]
¢þ
>WENV182588409
OJHT01000836
[OJHT] seawater metagenome; Sea water
98
174
+
Pro
TGG
[ENA]
¢þ
>WENV182588452
OJHT01003628
[OJHT] seawater metagenome; Sea water
111
186
+
Gly
GCC
[ENA]
¢þ
>WENV182588405
OJHT01000767
[OJHT] seawater metagenome; Sea water
112
37
-
Val
TAC
[ENA]
¢þ
>WENV182588473
OJHT01005994
[OJHT] seawater metagenome; Sea water
117
31
-
Leu
TAA
[ENA]
¢þ
>WENV182588487
OJHT01007682
[OJHT] seawater metagenome; Sea water
117
41
-
Ile2
CAT
[ENA]
¢þ
>WENV182588424
OJHT01001535
[OJHT] seawater metagenome; Sea water
117
42
-
Trp
CCA
[ENA]
¢þ
>WENV182588459
OJHT01004059
[OJHT] seawater metagenome; Sea water
120
44
-
fMet
CAT
[ENA]
¢þ
>WENV182588446
OJHT01003232
[OJHT] seawater metagenome; Sea water
131
57
-
Met
CAT
[ENA]
¢þ
>WENV182588421
OJHT01001366
[OJHT] seawater metagenome; Sea water
136
210
+
Met
CAT
[ENA]
¢þ
>WENV182588414
OJHT01001061
[OJHT] seawater metagenome; Sea water
137
210
+
Arg
CCG
[ENA]
¢þ
>WENV182588485
OJHT01007008
[OJHT] seawater metagenome; Sea water
140
212
+
Cys
GCA
[ENA]
¢þ
>WENV182588390
OJHT01000183
[OJHT] seawater metagenome; Sea water
142
216
+
Asp
GTC
[ENA]
¢þ
>WENV182588440
OJHT01002360
[OJHT] seawater metagenome; Sea water
152
76
-
Asp
GTC
[ENA]
¢þ
>WENV182588447
OJHT01003459
[OJHT] seawater metagenome; Sea water
161
235
+
Thr
TGT
[ENA]
¢þ
>WENV182588481
OJHT01006751
[OJHT] seawater metagenome; Sea water
162
236
+
Met
CAT
[ENA]
¢þ
>WENV182588491
OJHT01007921
[OJHT] seawater metagenome; Sea water
166
91
-
Lys
TTT
[ENA]
¢þ
>WENV182588451
OJHT01003600
[OJHT] seawater metagenome; Sea water
175
103
-
Val
CAC
[ENA]
¢þ
>WENV182588410
OJHT01000836
[OJHT] seawater metagenome; Sea water
175
251
+
Arg
TCT
[ENA]
¢þ
>WENV182588441
OJHT01002435
[OJHT] seawater metagenome; Sea water
191
115
-
Asn
GTT
[ENA]
¢þ
>WENV182588432
OJHT01002057
[OJHT] seawater metagenome; Sea water
193
118
-
Thr
TGT
[ENA]
¢þ
>WENV182588431
OJHT01002038
[OJHT] seawater metagenome; Sea water
208
132
-
Ile2
CAT
[ENA]
¢þ
>WENV182588472
OJHT01005994
[OJHT] seawater metagenome; Sea water
213
131
-
Tyr
GTA
[ENA]
¢þ
>WENV182588420
OJHT01001359
[OJHT] seawater metagenome; Sea water
226
301
+
Thr
GGT
[ENA]
¢þ
>WENV182588439
OJHT01002360
[OJHT] seawater metagenome; Sea water
233
158
-
Val
TAC
[ENA]
¢þ
>WENV182588373
OJHT01000089
[OJHT] seawater metagenome; Sea water
236
321
+
Tyr
GTA
[ENA]
¢þ
>WENV182588422
OJHT01001366
[OJHT] seawater metagenome; Sea water
239
314
+
Lys
CTT
[ENA]
¢þ
>WENV182588483
OJHT01006813
[OJHT] seawater metagenome; Sea water
243
318
+
Thr
TGT
[ENA]
¢þ
>WENV182588455
OJHT01003880
[OJHT] seawater metagenome; Sea water
261
170
-
Ser
GCT
[ENA]
¢þ
>WENV182588456
OJHT01003889
[OJHT] seawater metagenome; Sea water
274
359
+
Leu
GAG
[ENA]
¢þ
>WENV182588403
OJHT01000632
[OJHT] seawater metagenome; Sea water
282
358
+
Pro
TGG
[ENA]
¢þ
>WENV182588448
OJHT01003459
[OJHT] seawater metagenome; Sea water
286
368
+
Tyr
GTA
[ENA]
¢þ
>WENV182588488
OJHT01007754
[OJHT] seawater metagenome; Sea water
289
363
+
Ile
GAT
[ENA]
¢þ
>WENV182588408
OJHT01000830
[OJHT] seawater metagenome; Sea water
331
248
-
Tyr
GTA
[ENA]
¢þ
>WENV182588478
OJHT01006460
[OJHT] seawater metagenome; Sea water
341
259
-
Leu
TAG
[ENA]
¢þ
>WENV182588479
OJHT01006518
[OJHT] seawater metagenome; Sea water
351
423
+
Glu
CTC
[ENA]
¢þ
>WENV182588463
OJHT01004941
[OJHT] seawater metagenome; Sea water
367
439
+
Arg
TCT
[ENA]
¢þ
>WENV182588374
OJHT01000089
[OJHT] seawater metagenome; Sea water
368
441
+
Gly
TCC
[ENA]
¢þ
>WENV182588466
OJHT01005441
[OJHT] seawater metagenome; Sea water
375
445
+
Gly
TCC
[ENA]
¢þ
>WENV182588460
OJHT01004301
[OJHT] seawater metagenome; Sea water
375
451
+
His
GTG
[ENA]
¢þ
>WENV182588489
OJHT01007754
[OJHT] seawater metagenome; Sea water
385
460
+
Ala
TGC
[ENA]
¢þ
>WENV182588471
OJHT01005816
[OJHT] seawater metagenome; Sea water
393
317
-
Ile2
CAT
[ENA]
¢þ
>WENV182588449
OJHT01003459
[OJHT] seawater metagenome; Sea water
395
468
+
Gly
TCC
[ENA]
¢þ
>WENV182588461
OJHT01004367
[OJHT] seawater metagenome; Sea water
396
466
+
Gly
TCC
[ENA]
¢þ
>WENV182588493
OJHT01008095
[OJHT] seawater metagenome; Sea water
401
474
+
Ile2
CAT
[ENA]
¢þ
>WENV182588490
OJHT01007777
[OJHT] seawater metagenome; Sea water
408
333
-
Lys
TTT
[ENA]
¢þ
>WENV182588484
OJHT01006813
[OJHT] seawater metagenome; Sea water
423
496
+
Gly
TCC
[ENA]
¢þ
>WENV182588474
OJHT01006048
[OJHT] seawater metagenome; Sea water
427
501
+
Met
CAT
[ENA]
¢þ
>WENV182588475
OJHT01006138
[OJHT] seawater metagenome; Sea water
437
355
-
Leu
TAG
[ENA]
¢þ
>WENV182588486
OJHT01007149
[OJHT] seawater metagenome; Sea water
442
515
+
Lys
CTT
[ENA]
¢þ
>WENV182588469
OJHT01005592
[OJHT] seawater metagenome; Sea water
445
518
+
Cys
GCA
[ENA]
¢þ
>WENV182588465
OJHT01005347
[OJHT] seawater metagenome; Sea water
448
524
+
Pro
TGG
[ENA]
¢þ
>WENV182588458
OJHT01003979
[OJHT] seawater metagenome; Sea water
469
544
+
Thr
GGT
[ENA]
¢þ
>WENV182588450
OJHT01003459
[OJHT] seawater metagenome; Sea water
480
552
+
Thr
GGT
[ENA]
¢þ
>WENV182588454
OJHT01003820
[OJHT] seawater metagenome; Sea water
489
573
+
Leu
TAG
[ENA]
¢þ
>WENV182588467
OJHT01005515
[OJHT] seawater metagenome; Sea water
491
565
+
Gln
TTG
[ENA]
¢þ
>WENV182588379
OJHT01000115
[OJHT] seawater metagenome; Sea water
493
417
-
fMet
CAT
[ENA]
¢þ
>WENV182588468
OJHT01005591
[OJHT] seawater metagenome; Sea water
501
573
+
Thr
TGT
[ENA]
¢þ
>WENV182588369
OJHT01000039
[OJHT] seawater metagenome; Sea water
506
430
-
Ile2
CAT
[ENA]
¢þ
>WENV182588477
OJHT01006317
[OJHT] seawater metagenome; Sea water
514
438
-
Arg
TCG
[ENA]
¢þ
>WENV182588470
OJHT01005606
[OJHT] seawater metagenome; Sea water
516
587
+
Gly
GCC
[ENA]
¢þ
>WENV182588406
OJHT01000817
[OJHT] seawater metagenome; Sea water
529
602
+
Cys
GCA
[ENA]
¢þ
>WENV182588436
OJHT01002298
[OJHT] seawater metagenome; Sea water
547
622
+
Phe
GAA
[ENA]
¢þ
>WENV182588462
OJHT01004560
[OJHT] seawater metagenome; Sea water
551
627
+
fMet
CAT
[ENA]
¢þ
>WENV182588397
OJHT01000351
[OJHT] seawater metagenome; Sea water
553
479
-
Gly
GCC
[ENA]
¢þ
>WENV182588444
OJHT01003156
[OJHT] seawater metagenome; Sea water
570
644
+
Asp
GTC
[ENA]
¢þ
>WENV182588464
OJHT01004953
[OJHT] seawater metagenome; Sea water
586
662
+
Ile
GAT
[ENA]
¢þ
>WENV182588407
OJHT01000817
[OJHT] seawater metagenome; Sea water
653
728
+
Asn
GTT
[ENA]
¢þ
>WENV182588438
OJHT01002350
[OJHT] seawater metagenome; Sea water
667
594
-
Cys
GCA
[ENA]
¢þ
>WENV182588433
OJHT01002252
[OJHT] seawater metagenome; Sea water
720
792
+
Gly
GCC
[ENA]
¢þ
>WENV182588443
OJHT01003143
[OJHT] seawater metagenome; Sea water
724
800
+
Pro
TGG
[ENA]
¢þ
>WENV182588445
OJHT01003214
[OJHT] seawater metagenome; Sea water
732
806
+
Glu
TTC
[ENA]
¢þ
>WENV182588437
OJHT01002298
[OJHT] seawater metagenome; Sea water
786
862
+
His
GTG
[ENA]
¢þ
>WENV182588442
OJHT01003052
[OJHT] seawater metagenome; Sea water
787
703
-
Leu
TAA
[ENA]
¢þ
>WENV182588435
OJHT01002277
[OJHT] seawater metagenome; Sea water
795
721
-
Arg
TCG
[ENA]
¢þ
>WENV182588415
OJHT01001085
[OJHT] seawater metagenome; Sea water
815
741
-
Glu
TTC
[ENA]
¢þ
>WENV182588434
OJHT01002252
[OJHT] seawater metagenome; Sea water
820
904
+
Leu
TAA
[ENA]
¢þ
>WENV182588412
OJHT01000985
[OJHT] seawater metagenome; Sea water
832
747
-
Leu
CAA
[ENA]
¢þ
>WENV182588419
OJHT01001266
[OJHT] seawater metagenome; Sea water
834
759
-
Val
TAC
[ENA]
¢þ
>WENV182588426
OJHT01001595
[OJHT] seawater metagenome; Sea water
888
961
+
Glu
TTC
[ENA]
¢þ
>WENV182588416
OJHT01001155
[OJHT] seawater metagenome; Sea water
904
988
+
Leu
TAA
[ENA]
¢þ
>WENV182588427
OJHT01001595
[OJHT] seawater metagenome; Sea water
980
1054
+
Asp
GTC
[ENA]
¢þ
>WENV182588402
OJHT01000554
[OJHT] seawater metagenome; Sea water
984
1057
+
Trp
CCA
[ENA]
¢þ
>WENV182588425
OJHT01001583
[OJHT] seawater metagenome; Sea water
987
1063
+
Met
CAT
[ENA]
¢þ
>WENV182588430
OJHT01002025
[OJHT] seawater metagenome; Sea water
988
912
-
Arg
ACG
[ENA]
¢þ
>WENV182588428
OJHT01001637
[OJHT] seawater metagenome; Sea water
989
917
-
Arg
CCT
[ENA]
¢þ
>WENV182588429
OJHT01001853
[OJHT] seawater metagenome; Sea water
1019
1095
+
Met
CAT
[ENA]
¢þ
>WENV182588423
OJHT01001402
[OJHT] seawater metagenome; Sea water
1086
1161
+
Phe
GAA
[ENA]
¢þ
>WENV182588404
OJHT01000718
[OJHT] seawater metagenome; Sea water
1088
1003
-
Leu
GAG
[ENA]
¢þ
>WENV182588413
OJHT01001024
[OJHT] seawater metagenome; Sea water
1208
1280
+
Gln
CTG
[ENA]
¢þ
>WENV182588417
OJHT01001222
[OJHT] seawater metagenome; Sea water
1316
1241
-
Ala
TGC
[ENA]
¢þ
>WENV182588411
OJHT01000941
[OJHT] seawater metagenome; Sea water
1354
1280
-
fMet
CAT
[ENA]
¢þ
>WENV182588381
OJHT01000126
[OJHT] seawater metagenome; Sea water
1377
1451
+
Ile
GAT
[ENA]
¢þ
>WENV182588382
OJHT01000126
[OJHT] seawater metagenome; Sea water
1540
1614
+
Ala
TGC
[ENA]
¢þ
>WENV182588375
OJHT01000089
[OJHT] seawater metagenome; Sea water
1692
1767
+
Trp
CCA
[ENA]
¢þ
>WENV182588399
OJHT01000361
[OJHT] seawater metagenome; Sea water
1754
1678
-
fMet
CAT
[ENA]
¢þ
>WENV182588398
OJHT01000361
[OJHT] seawater metagenome; Sea water
1850
1936
+
Leu
GAG
[ENA]
¢þ
>WENV182588394
OJHT01000320
[OJHT] seawater metagenome; Sea water
1939
2028
+
Ser
TGA
[ENA]
¢þ
>WENV182588370
OJHT01000060
[OJHT] seawater metagenome; Sea water
1959
1882
-
Ile
GAT
[ENA]
¢þ
>WENV182588393
OJHT01000266
[OJHT] seawater metagenome; Sea water
1992
1901
-
Ser
TGA
[ENA]
¢þ
>WENV182588401
OJHT01000476
[OJHT] seawater metagenome; Sea water
2011
2086
+
Trp
CCA
[ENA]
¢þ
>WENV182588387
OJHT01000152
[OJHT] seawater metagenome; Sea water
2058
1983
-
Lys
TTT
[ENA]
¢þ
>WENV182588396
OJHT01000342
[OJHT] seawater metagenome; Sea water
2320
2396
+
Arg
TCT
[ENA]
¢þ
>WENV182588384
OJHT01000127
[OJHT] seawater metagenome; Sea water
2415
2339
-
Asp
GTC
[ENA]
¢þ
>WENV182588400
OJHT01000372
[OJHT] seawater metagenome; Sea water
2494
2418
-
Arg
TCT
[ENA]
¢þ
>WENV182588383
OJHT01000127
[OJHT] seawater metagenome; Sea water
2505
2430
-
Val
TAC
[ENA]
¢þ
>WENV182588395
OJHT01000341
[OJHT] seawater metagenome; Sea water
2662
2586
-
Pro
TGG
[ENA]
¢þ
>WENV182588386
OJHT01000151
[OJHT] seawater metagenome; Sea water
2755
2681
-
Gln
TTG
[ENA]
¢þ
>WENV182588388
OJHT01000169
[OJHT] seawater metagenome; Sea water
2886
2960
+
Asn
GTT
[ENA]
¢þ
>WENV182588391
OJHT01000228
[OJHT] seawater metagenome; Sea water
3070
3154
+
Leu
CAA
[ENA]
¢þ
>WENV182588392
OJHT01000250
[OJHT] seawater metagenome; Sea water
3190
3106
-
Leu
TAG
[ENA]
¢þ
>WENV182588376
OJHT01000096
[OJHT] seawater metagenome; Sea water
3201
3277
+
Arg
TCG
[ENA]
¢þ
>WENV182588363
OJHT01000011
[OJHT] seawater metagenome; Sea water
3740
3816
+
Arg
TCG
[ENA]
¢þ
>WENV182588368
OJHT01000034
[OJHT] seawater metagenome; Sea water
3775
3700
-
Trp
CCA
[ENA]
¢þ
>WENV182588378
OJHT01000113
[OJHT] seawater metagenome; Sea water
3852
3778
-
Gly
GCC
[ENA]
¢þ
>WENV182588385
OJHT01000142
[OJHT] seawater metagenome; Sea water
3895
3969
+
Arg
TCG
[ENA]
¢þ
>WENV182588372
OJHT01000076
[OJHT] seawater metagenome; Sea water
3895
3984
+
Ser
GCT
[ENA]
¢þ
>WENV182588380
OJHT01000119
[OJHT] seawater metagenome; Sea water
4248
4172
-
Arg
ACG
[ENA]
¢þ
>WENV182588367
OJHT01000034
[OJHT] seawater metagenome; Sea water
5143
5069
-
Thr
GGT
[ENA]
¢þ
>WENV182588366
OJHT01000034
[OJHT] seawater metagenome; Sea water
5349
5266
-
Tyr
GTA
[ENA]
¢þ
>WENV182588371
OJHT01000063
[OJHT] seawater metagenome; Sea water
5504
5579
+
Ala
TGC
[ENA]
¢þ
>WENV182588377
OJHT01000097
[OJHT] seawater metagenome; Sea water
5792
5703
-
Ser
GGA
[ENA]
¢þ
>WENV182588360
OJHT01000004
[OJHT] seawater metagenome; Sea water
6668
6759
+
Ser
GCT
[ENA]
¢þ
>WENV182588365
OJHT01000034
[OJHT] seawater metagenome; Sea water
6818
6893
+
Thr
TGT
[ENA]
¢þ
>WENV182588364
OJHT01000029
[OJHT] seawater metagenome; Sea water
9351
9435
+
Leu
CAA
[ENA]
¢þ
>WENV182588359
OJHT01000001
[OJHT] seawater metagenome; Sea water
15578
15504
-
His
GTG
[ENA]
¢þ
>WENV182588358
OJHT01000001
[OJHT] seawater metagenome; Sea water
15869
15794
-
Phe
GAA
[ENA]
¢þ
>WENV182588361
OJHT01000006
[OJHT] seawater metagenome; Sea water
18721
18648
-
Gln
TTG
[ENA]
¢þ
>WENV182588357
OJHT01000001
[OJHT] seawater metagenome; Sea water
19987
20060
+
Thr
GGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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