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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJHX] seawater metagenome; Sea water
HIT:
38 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182588769
OJHX01001522
[OJHX] seawater metagenome; Sea water
106
179
+
Ala
TGC
[ENA]
¢þ
>WENV182588772
OJHX01002326
[OJHX] seawater metagenome; Sea water
118
189
+
Trp
CCA
[ENA]
¢þ
>WENV182588768
OJHX01001415
[OJHX] seawater metagenome; Sea water
123
207
+
Leu
TAG
[ENA]
¢þ
>WENV182588773
OJHX01002463
[OJHX] seawater metagenome; Sea water
138
214
+
Ile2
CAT
[ENA]
¢þ
>WENV182588775
OJHX01002928
[OJHX] seawater metagenome; Sea water
147
72
-
Lys
TTT
[ENA]
¢þ
>WENV182588756
OJHX01000451
[OJHX] seawater metagenome; Sea water
163
89
-
Ile
GAT
[ENA]
¢þ
>WENV182588760
OJHX01000580
[OJHX] seawater metagenome; Sea water
197
121
-
Asp
GTC
[ENA]
¢þ
>WENV182588776
OJHX01002929
[OJHX] seawater metagenome; Sea water
253
179
-
Val
GAC
[ENA]
¢þ
>WENV182588759
OJHX01000580
[OJHX] seawater metagenome; Sea water
287
212
-
Val
TAC
[ENA]
¢þ
>WENV182588770
OJHX01001612
[OJHX] seawater metagenome; Sea water
307
392
+
Leu
CAA
[ENA]
¢þ
>WENV182588774
OJHX01002533
[OJHX] seawater metagenome; Sea water
322
252
-
Gly
GCC
[ENA]
¢þ
>WENV182588779
OJHX01003612
[OJHX] seawater metagenome; Sea water
341
415
+
Phe
GAA
[ENA]
¢þ
>WENV182588771
OJHX01001960
[OJHX] seawater metagenome; Sea water
342
266
-
Arg
TCT
[ENA]
¢þ
>WENV182588749
OJHX01000216
[OJHX] seawater metagenome; Sea water
376
450
+
Gly
GCC
[ENA]
¢þ
>WENV182588778
OJHX01003278
[OJHX] seawater metagenome; Sea water
524
450
-
Gly
TCC
[ENA]
¢þ
>WENV182588777
OJHX01003096
[OJHX] seawater metagenome; Sea water
536
464
-
Glu
CTC
[ENA]
¢þ
>WENV182588765
OJHX01000995
[OJHX] seawater metagenome; Sea water
545
621
+
fMet
CAT
[ENA]
¢þ
>WENV182588761
OJHX01000726
[OJHX] seawater metagenome; Sea water
638
715
+
Ile
GAT
[ENA]
¢þ
>WENV182588752
OJHX01000360
[OJHX] seawater metagenome; Sea water
649
576
-
Gly
TCC
[ENA]
¢þ
>WENV182588758
OJHX01000493
[OJHX] seawater metagenome; Sea water
713
802
+
Ser
TGA
[ENA]
¢þ
>WENV182588762
OJHX01000726
[OJHX] seawater metagenome; Sea water
722
797
+
Ala
TGC
[ENA]
¢þ
>WENV182588766
OJHX01001060
[OJHX] seawater metagenome; Sea water
741
814
+
Cys
GCA
[ENA]
¢þ
>WENV182588751
OJHX01000360
[OJHX] seawater metagenome; Sea water
781
696
-
Tyr
GTA
[ENA]
¢þ
>WENV182588754
OJHX01000420
[OJHX] seawater metagenome; Sea water
838
922
+
Leu
CAA
[ENA]
¢þ
>WENV182588767
OJHX01001060
[OJHX] seawater metagenome; Sea water
865
940
+
Asn
GTT
[ENA]
¢þ
>WENV182588764
OJHX01000956
[OJHX] seawater metagenome; Sea water
913
987
+
Arg
TCG
[ENA]
¢þ
>WENV182588755
OJHX01000427
[OJHX] seawater metagenome; Sea water
1037
962
-
Trp
CCA
[ENA]
¢þ
>WENV182588763
OJHX01000761
[OJHX] seawater metagenome; Sea water
1168
1094
-
Gly
GCC
[ENA]
¢þ
>WENV182588748
OJHX01000179
[OJHX] seawater metagenome; Sea water
1308
1384
+
Arg
TCG
[ENA]
¢þ
>WENV182588753
OJHX01000395
[OJHX] seawater metagenome; Sea water
1346
1261
-
Leu
GAG
[ENA]
¢þ
>WENV182588757
OJHX01000454
[OJHX] seawater metagenome; Sea water
1514
1438
-
Arg
ACG
[ENA]
¢þ
>WENV182588742
OJHX01000029
[OJHX] seawater metagenome; Sea water
1544
1620
+
Ile
GAT
[ENA]
¢þ
>WENV182588743
OJHX01000029
[OJHX] seawater metagenome; Sea water
1632
1707
+
Ala
TGC
[ENA]
¢þ
>WENV182588750
OJHX01000360
[OJHX] seawater metagenome; Sea water
1690
1765
+
Thr
TGT
[ENA]
¢þ
>WENV182588747
OJHX01000075
[OJHX] seawater metagenome; Sea water
2020
1929
-
Ser
GCT
[ENA]
¢þ
>WENV182588744
OJHX01000042
[OJHX] seawater metagenome; Sea water
2450
2523
+
Thr
GGT
[ENA]
¢þ
>WENV182588746
OJHX01000046
[OJHX] seawater metagenome; Sea water
3071
2997
-
His
GTG
[ENA]
¢þ
>WENV182588745
OJHX01000046
[OJHX] seawater metagenome; Sea water
3362
3287
-
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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