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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJHZ] seawater metagenome; Sea water
HIT:
38 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182589160
OJHZ01005009
[OJHZ] seawater metagenome; Sea water
41
114
+
Ile
GAT
[ENA]
¢þ
>WENV182589165
OJHZ01006969
[OJHZ] seawater metagenome; Sea water
56
145
+
Ser
GGA
[ENA]
¢þ
>WENV182589168
OJHZ01011224
[OJHZ] seawater metagenome; Sea water
61
137
+
Arg
GCG
[ENA]
¢þ
>WENV182589166
OJHZ01009872
[OJHZ] seawater metagenome; Sea water
65
150
+
Tyr
GTA
[ENA]
¢þ
>WENV182589179
OJHZ01014480
[OJHZ] seawater metagenome; Sea water
73
-1
-
Asp
GTC
[ENA]
¢þ
>WENV182589153
OJHZ01000425
[OJHZ] seawater metagenome; Sea water
93
169
+
Ile
GAT
[ENA]
¢þ
>WENV182589161
OJHZ01005009
[OJHZ] seawater metagenome; Sea water
121
193
+
Ala
TGC
[ENA]
¢þ
>WENV182589158
OJHZ01003535
[OJHZ] seawater metagenome; Sea water
130
206
+
Ile
GAT
[ENA]
¢þ
>WENV182589162
OJHZ01005208
[OJHZ] seawater metagenome; Sea water
141
216
+
Gly
TCC
[ENA]
¢þ
>WENV182589154
OJHZ01000425
[OJHZ] seawater metagenome; Sea water
175
250
+
Ala
TGC
[ENA]
¢þ
>WENV182589151
OJHZ01000108
[OJHZ] seawater metagenome; Sea water
184
269
+
Leu
TAG
[ENA]
¢þ
>WENV182589167
OJHZ01009872
[OJHZ] seawater metagenome; Sea water
197
270
+
Gly
TCC
[ENA]
¢þ
>WENV182589175
OJHZ01012319
[OJHZ] seawater metagenome; Sea water
205
130
-
Thr
GGT
[ENA]
¢þ
>WENV182589178
OJHZ01014480
[OJHZ] seawater metagenome; Sea water
243
168
-
Val
TAC
[ENA]
¢þ
>WENV182589159
OJHZ01003535
[OJHZ] seawater metagenome; Sea water
254
329
+
Ala
TGC
[ENA]
¢þ
>WENV182589174
OJHZ01012319
[OJHZ] seawater metagenome; Sea water
294
221
-
Gly
TCC
[ENA]
¢þ
>WENV182589150
OJHZ01000096
[OJHZ] seawater metagenome; Sea water
308
382
+
Gln
TTG
[ENA]
¢þ
>WENV182589169
OJHZ01011224
[OJHZ] seawater metagenome; Sea water
308
384
+
Pro
TGG
[ENA]
¢þ
>WENV182589177
OJHZ01014480
[OJHZ] seawater metagenome; Sea water
354
280
-
Glu
TTC
[ENA]
¢þ
>WENV182589163
OJHZ01006102
[OJHZ] seawater metagenome; Sea water
382
455
+
Gly
TCC
[ENA]
¢þ
>WENV182589173
OJHZ01012319
[OJHZ] seawater metagenome; Sea water
405
321
-
Tyr
GTA
[ENA]
¢þ
>WENV182589170
OJHZ01011224
[OJHZ] seawater metagenome; Sea water
407
483
+
Arg
TCT
[ENA]
¢þ
>WENV182589176
OJHZ01014480
[OJHZ] seawater metagenome; Sea water
452
377
-
Lys
TTT
[ENA]
¢þ
>WENV182589171
OJHZ01012025
[OJHZ] seawater metagenome; Sea water
453
380
-
His
GTG
[ENA]
¢þ
>WENV182589172
OJHZ01012319
[OJHZ] seawater metagenome; Sea water
525
450
-
Thr
TGT
[ENA]
¢þ
>WENV182589164
OJHZ01006102
[OJHZ] seawater metagenome; Sea water
577
652
+
Thr
GGT
[ENA]
¢þ
>WENV182589157
OJHZ01003528
[OJHZ] seawater metagenome; Sea water
838
914
+
Asp
GTC
[ENA]
¢þ
>WENV182589156
OJHZ01001186
[OJHZ] seawater metagenome; Sea water
1447
1376
-
Val
TAC
[ENA]
¢þ
>WENV182589155
OJHZ01001185
[OJHZ] seawater metagenome; Sea water
1461
1388
-
Ala
TGC
[ENA]
¢þ
>WENV182589152
OJHZ01000276
[OJHZ] seawater metagenome; Sea water
1606
1690
+
Ala
AGC
[ENA]
¢þ
>WENV182589144
OJHZ01000038
[OJHZ] seawater metagenome; Sea water
2101
2025
-
Asp
GTC
[ENA]
¢þ
>WENV182589143
OJHZ01000038
[OJHZ] seawater metagenome; Sea water
2183
2109
-
Val
TAC
[ENA]
¢þ
>WENV182589149
OJHZ01000039
[OJHZ] seawater metagenome; Sea water
3332
3257
-
Trp
CCA
[ENA]
¢þ
>WENV182589142
OJHZ01000011
[OJHZ] seawater metagenome; Sea water
4920
4995
+
Trp
CCA
[ENA]
¢þ
>WENV182589148
OJHZ01000039
[OJHZ] seawater metagenome; Sea water
5091
5015
-
Gly
TCC
[ENA]
¢þ
>WENV182589147
OJHZ01000039
[OJHZ] seawater metagenome; Sea water
5185
5101
-
Tyr
GTA
[ENA]
¢þ
>WENV182589146
OJHZ01000039
[OJHZ] seawater metagenome; Sea water
5317
5240
-
Thr
TGT
[ENA]
¢þ
>WENV182589145
OJHZ01000039
[OJHZ] seawater metagenome; Sea water
5404
5329
-
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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