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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJIB] seawater metagenome; Sea water
HIT:
36 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182589224
OJIB01002539
[OJIB] seawater metagenome; Sea water
3
78
+
Asn
GTT
[ENA]
¢þ
>WENV182589226
OJIB01002906
[OJIB] seawater metagenome; Sea water
46
116
+
Met
CAT
[ENA]
¢þ
>WENV182589225
OJIB01002615
[OJIB] seawater metagenome; Sea water
50
122
+
Thr
GGT
[ENA]
¢þ
>WENV182589217
OJIB01000678
[OJIB] seawater metagenome; Sea water
119
194
+
Thr
GGT
[ENA]
¢þ
>WENV182589232
OJIB01003192
[OJIB] seawater metagenome; Sea water
123
48
-
Trp
CCA
[ENA]
¢þ
>WENV182589227
OJIB01002906
[OJIB] seawater metagenome; Sea water
123
195
+
Ile
GAT
[ENA]
¢þ
>WENV182589208
OJIB01000344
[OJIB] seawater metagenome; Sea water
142
66
-
Arg
ACG
[ENA]
¢þ
>WENV182589234
OJIB01003376
[OJIB] seawater metagenome; Sea water
159
84
-
Ala
TGC
[ENA]
¢þ
>WENV182589238
OJIB01003704
[OJIB] seawater metagenome; Sea water
166
91
-
His
GTG
[ENA]
¢þ
>WENV182589221
OJIB01001878
[OJIB] seawater metagenome; Sea water
177
250
+
Gly
TCC
[ENA]
¢þ
>WENV182589228
OJIB01002906
[OJIB] seawater metagenome; Sea water
201
275
+
Gln
TTG
[ENA]
¢þ
>WENV182589207
OJIB01000344
[OJIB] seawater metagenome; Sea water
295
206
-
Ser
GCT
[ENA]
¢þ
>WENV182589222
OJIB01001878
[OJIB] seawater metagenome; Sea water
295
370
+
Thr
GGT
[ENA]
¢þ
>WENV182589229
OJIB01002906
[OJIB] seawater metagenome; Sea water
310
380
+
Trp
CCA
[ENA]
¢þ
>WENV182589237
OJIB01003704
[OJIB] seawater metagenome; Sea water
323
247
-
Arg
TCT
[ENA]
¢þ
>WENV182589231
OJIB01003145
[OJIB] seawater metagenome; Sea water
329
255
-
Lys
TTT
[ENA]
¢þ
>WENV182589220
OJIB01001695
[OJIB] seawater metagenome; Sea water
359
434
+
Gln
TTG
[ENA]
¢þ
>WENV182589240
OJIB01003725
[OJIB] seawater metagenome; Sea water
366
292
-
Ala
TGC
[ENA]
¢þ
>WENV182589236
OJIB01003704
[OJIB] seawater metagenome; Sea water
433
357
-
Pro
TGG
[ENA]
¢þ
>WENV182589235
OJIB01003479
[OJIB] seawater metagenome; Sea water
455
384
-
Trp
CCA
[ENA]
¢þ
>WENV182589230
OJIB01002906
[OJIB] seawater metagenome; Sea water
456
537
+
Ser
TGA
[ENA]
¢þ
>WENV182589233
OJIB01003376
[OJIB] seawater metagenome; Sea water
463
387
-
Ile
GAT
[ENA]
¢þ
>WENV182589239
OJIB01003725
[OJIB] seawater metagenome; Sea water
472
396
-
Ile
GAT
[ENA]
¢þ
>WENV182589223
OJIB01002537
[OJIB] seawater metagenome; Sea water
510
582
+
Glu
TTC
[ENA]
¢þ
>WENV182589219
OJIB01001226
[OJIB] seawater metagenome; Sea water
598
522
-
Met
CAT
[ENA]
¢þ
>WENV182589218
OJIB01000793
[OJIB] seawater metagenome; Sea water
1107
1193
+
Leu
TAA
[ENA]
¢þ
>WENV182589212
OJIB01000500
[OJIB] seawater metagenome; Sea water
1121
1049
-
Thr
GGT
[ENA]
¢þ
>WENV182589211
OJIB01000500
[OJIB] seawater metagenome; Sea water
1308
1235
-
Gly
TCC
[ENA]
¢þ
>WENV182589213
OJIB01000506
[OJIB] seawater metagenome; Sea water
1338
1411
+
Gly
CCC
[ENA]
¢þ
>WENV182589216
OJIB01000575
[OJIB] seawater metagenome; Sea water
1429
1354
-
His
GTG
[ENA]
¢þ
>WENV182589210
OJIB01000500
[OJIB] seawater metagenome; Sea water
1475
1392
-
Tyr
GTA
[ENA]
¢þ
>WENV182589215
OJIB01000575
[OJIB] seawater metagenome; Sea water
1536
1460
-
Arg
TCT
[ENA]
¢þ
>WENV182589214
OJIB01000575
[OJIB] seawater metagenome; Sea water
1637
1561
-
Pro
TGG
[ENA]
¢þ
>WENV182589209
OJIB01000500
[OJIB] seawater metagenome; Sea water
1705
1631
-
Thr
TGT
[ENA]
¢þ
>WENV182589206
OJIB01000281
[OJIB] seawater metagenome; Sea water
2048
1974
-
Gln
TTG
[ENA]
¢þ
>WENV182589205
OJIB01000016
[OJIB] seawater metagenome; Sea water
4971
5046
+
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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