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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OJIF] seawater metagenome; Sea water
HIT:
36 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182589662
OJIF01000624
[OJIF] seawater metagenome; Sea water
66
140
+
Thr
TGT
[ENA]
¢þ
>WENV182589678
OJIF01003197
[OJIF] seawater metagenome; Sea water
103
178
+
Ala
TGC
[ENA]
¢þ
>WENV182589656
OJIF01000324
[OJIF] seawater metagenome; Sea water
105
180
+
Phe
GAA
[ENA]
¢þ
>WENV182589667
OJIF01000977
[OJIF] seawater metagenome; Sea water
125
49
-
Asp
GTC
[ENA]
¢þ
>WENV182589680
OJIF01004009
[OJIF] seawater metagenome; Sea water
131
207
+
Arg
ACG
[ENA]
¢þ
>WENV182589677
OJIF01002911
[OJIF] seawater metagenome; Sea water
140
215
+
Ala
TGC
[ENA]
¢þ
>WENV182589682
OJIF01004041
[OJIF] seawater metagenome; Sea water
145
229
+
Tyr
GTA
[ENA]
¢þ
>WENV182589649
OJIF01000079
[OJIF] seawater metagenome; Sea water
153
228
+
Trp
CCA
[ENA]
¢þ
>WENV182589679
OJIF01003197
[OJIF] seawater metagenome; Sea water
194
270
+
Ile
GAT
[ENA]
¢þ
>WENV182589663
OJIF01000624
[OJIF] seawater metagenome; Sea water
196
278
+
Tyr
GTA
[ENA]
¢þ
>WENV182589672
OJIF01001807
[OJIF] seawater metagenome; Sea water
237
309
+
Trp
CCA
[ENA]
¢þ
>WENV182589657
OJIF01000324
[OJIF] seawater metagenome; Sea water
238
313
+
Thr
TGT
[ENA]
¢þ
>WENV182589650
OJIF01000206
[OJIF] seawater metagenome; Sea water
243
317
+
Ile
GAT
[ENA]
¢þ
>WENV182589683
OJIF01004041
[OJIF] seawater metagenome; Sea water
259
332
+
Gly
TCC
[ENA]
¢þ
>WENV182589664
OJIF01000624
[OJIF] seawater metagenome; Sea water
292
365
+
Gly
TCC
[ENA]
¢þ
>WENV182589681
OJIF01004009
[OJIF] seawater metagenome; Sea water
327
403
+
Pro
TGG
[ENA]
¢þ
>WENV182589658
OJIF01000324
[OJIF] seawater metagenome; Sea water
354
438
+
Tyr
GTA
[ENA]
¢þ
>WENV182589655
OJIF01000208
[OJIF] seawater metagenome; Sea water
389
314
-
Trp
CCA
[ENA]
¢þ
>WENV182589651
OJIF01000206
[OJIF] seawater metagenome; Sea water
396
472
+
Ala
TGC
[ENA]
¢þ
>WENV182589665
OJIF01000624
[OJIF] seawater metagenome; Sea water
434
506
+
Thr
GGT
[ENA]
¢þ
>WENV182589659
OJIF01000324
[OJIF] seawater metagenome; Sea water
484
558
+
Gly
TCC
[ENA]
¢þ
>WENV182589676
OJIF01002032
[OJIF] seawater metagenome; Sea water
493
418
-
Ala
TGC
[ENA]
¢þ
>WENV182589660
OJIF01000324
[OJIF] seawater metagenome; Sea water
570
645
+
Thr
GGT
[ENA]
¢þ
>WENV182589668
OJIF01001137
[OJIF] seawater metagenome; Sea water
573
648
+
Trp
CCA
[ENA]
¢þ
>WENV182589671
OJIF01001293
[OJIF] seawater metagenome; Sea water
582
667
+
Leu
GAG
[ENA]
¢þ
>WENV182589675
OJIF01002032
[OJIF] seawater metagenome; Sea water
598
522
-
Ile
GAT
[ENA]
¢þ
>WENV182589673
OJIF01001981
[OJIF] seawater metagenome; Sea water
612
536
-
Ile
GAT
[ENA]
¢þ
>WENV182589670
OJIF01001213
[OJIF] seawater metagenome; Sea water
620
545
-
Ala
TGC
[ENA]
¢þ
>WENV182589674
OJIF01002021
[OJIF] seawater metagenome; Sea water
621
697
+
Arg
ACG
[ENA]
¢þ
>WENV182589669
OJIF01001213
[OJIF] seawater metagenome; Sea water
715
639
-
Ile
GAT
[ENA]
¢þ
>WENV182589666
OJIF01000731
[OJIF] seawater metagenome; Sea water
1127
1203
+
His
GTG
[ENA]
¢þ
>WENV182589661
OJIF01000494
[OJIF] seawater metagenome; Sea water
1258
1344
+
Leu
TAA
[ENA]
¢þ
>WENV182589654
OJIF01000208
[OJIF] seawater metagenome; Sea water
1879
1804
-
Thr
GGT
[ENA]
¢þ
>WENV182589653
OJIF01000208
[OJIF] seawater metagenome; Sea water
1996
1923
-
Gly
TCC
[ENA]
¢þ
>WENV182589652
OJIF01000208
[OJIF] seawater metagenome; Sea water
2163
2080
-
Tyr
GTA
[ENA]
¢þ
>WENV182589648
OJIF01000034
[OJIF] seawater metagenome; Sea water
5214
5298
+
Ala
AGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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