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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJIJ] seawater metagenome; Sea water
HIT:
122 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182590657
OJIJ01002678
[OJIJ] seawater metagenome; Sea water
79
154
+
Gly
GCC
[ENA]
¢þ
>WENV182590608
OJIJ01000318
[OJIJ] seawater metagenome; Sea water
101
185
+
Tyr
GTA
[ENA]
¢þ
>WENV182590642
OJIJ01001132
[OJIJ] seawater metagenome; Sea water
115
191
+
Ile
GAT
[ENA]
¢þ
>WENV182590649
OJIJ01002030
[OJIJ] seawater metagenome; Sea water
118
194
+
Arg
ACG
[ENA]
¢þ
>WENV182590666
OJIJ01005222
[OJIJ] seawater metagenome; Sea water
140
64
-
Arg
CCT
[ENA]
¢þ
>WENV182590648
OJIJ01001729
[OJIJ] seawater metagenome; Sea water
160
85
-
Thr
TGT
[ENA]
¢þ
>WENV182590628
OJIJ01000657
[OJIJ] seawater metagenome; Sea water
174
99
-
Val
TAC
[ENA]
¢þ
>WENV182590668
OJIJ01008910
[OJIJ] seawater metagenome; Sea water
186
110
-
Arg
TCT
[ENA]
¢þ
>WENV182590658
OJIJ01002678
[OJIJ] seawater metagenome; Sea water
199
272
+
Cys
GCA
[ENA]
¢þ
>WENV182590664
OJIJ01004019
[OJIJ] seawater metagenome; Sea water
207
131
-
Val
GAC
[ENA]
¢þ
>WENV182590643
OJIJ01001132
[OJIJ] seawater metagenome; Sea water
209
284
+
Ala
TGC
[ENA]
¢þ
>WENV182590650
OJIJ01002030
[OJIJ] seawater metagenome; Sea water
301
390
+
Ser
GCT
[ENA]
¢þ
>WENV182590659
OJIJ01002678
[OJIJ] seawater metagenome; Sea water
365
450
+
Leu
TAA
[ENA]
¢þ
>WENV182590667
OJIJ01007270
[OJIJ] seawater metagenome; Sea water
401
317
-
Leu
CAA
[ENA]
¢þ
>WENV182590663
OJIJ01003851
[OJIJ] seawater metagenome; Sea water
413
338
-
Glu
TTC
[ENA]
¢þ
>WENV182590653
OJIJ01002344
[OJIJ] seawater metagenome; Sea water
503
576
+
Cys
GCA
[ENA]
¢þ
>WENV182590662
OJIJ01003851
[OJIJ] seawater metagenome; Sea water
521
446
-
Gly
GCC
[ENA]
¢þ
>WENV182590641
OJIJ01001104
[OJIJ] seawater metagenome; Sea water
577
665
+
Ser
GGA
[ENA]
¢þ
>WENV182590665
OJIJ01005026
[OJIJ] seawater metagenome; Sea water
659
583
-
Val
GAC
[ENA]
¢þ
>WENV182590629
OJIJ01000714
[OJIJ] seawater metagenome; Sea water
686
602
-
Leu
GAG
[ENA]
¢þ
>WENV182590622
OJIJ01000578
[OJIJ] seawater metagenome; Sea water
749
824
+
His
GTG
[ENA]
¢þ
>WENV182590656
OJIJ01002559
[OJIJ] seawater metagenome; Sea water
808
884
+
Arg
CCG
[ENA]
¢þ
>WENV182590660
OJIJ01002942
[OJIJ] seawater metagenome; Sea water
862
935
+
Gln
CTG
[ENA]
¢þ
>WENV182590623
OJIJ01000578
[OJIJ] seawater metagenome; Sea water
872
948
+
Pro
TGG
[ENA]
¢þ
>WENV182590607
OJIJ01000291
[OJIJ] seawater metagenome; Sea water
884
797
-
Leu
TAA
[ENA]
¢þ
>WENV182590661
OJIJ01003446
[OJIJ] seawater metagenome; Sea water
913
823
-
Ser
TGA
[ENA]
¢þ
>WENV182590654
OJIJ01002344
[OJIJ] seawater metagenome; Sea water
982
1057
+
Asn
GTT
[ENA]
¢þ
>WENV182590646
OJIJ01001296
[OJIJ] seawater metagenome; Sea water
1109
1185
+
Met
CAT
[ENA]
¢þ
>WENV182590652
OJIJ01002297
[OJIJ] seawater metagenome; Sea water
1116
1041
-
Arg
CCT
[ENA]
¢þ
>WENV182590647
OJIJ01001577
[OJIJ] seawater metagenome; Sea water
1119
1032
-
Leu
GAG
[ENA]
¢þ
>WENV182590630
OJIJ01000816
[OJIJ] seawater metagenome; Sea water
1123
1037
-
Leu
CAA
[ENA]
¢þ
>WENV182590655
OJIJ01002477
[OJIJ] seawater metagenome; Sea water
1125
1049
-
Pro
GGG
[ENA]
¢þ
>WENV182590601
OJIJ01000162
[OJIJ] seawater metagenome; Sea water
1171
1097
-
Asn
GTT
[ENA]
¢þ
>WENV182590651
OJIJ01002058
[OJIJ] seawater metagenome; Sea water
1221
1147
-
Gly
GCC
[ENA]
¢þ
>WENV182590631
OJIJ01000827
[OJIJ] seawater metagenome; Sea water
1261
1336
+
Lys
TTT
[ENA]
¢þ
>WENV182590635
OJIJ01000911
[OJIJ] seawater metagenome; Sea water
1563
1487
-
Asp
GTC
[ENA]
¢þ
>WENV182590644
OJIJ01001134
[OJIJ] seawater metagenome; Sea water
1578
1489
-
Ser
GGA
[ENA]
¢þ
>WENV182590640
OJIJ01000971
[OJIJ] seawater metagenome; Sea water
1744
1670
-
Thr
GGT
[ENA]
¢þ
>WENV182590645
OJIJ01001272
[OJIJ] seawater metagenome; Sea water
1804
1879
+
Phe
GAA
[ENA]
¢þ
>WENV182590639
OJIJ01000971
[OJIJ] seawater metagenome; Sea water
1869
1795
-
Gly
TCC
[ENA]
¢þ
>WENV182590633
OJIJ01000863
[OJIJ] seawater metagenome; Sea water
2010
2085
+
Phe
GAA
[ENA]
¢þ
>WENV182590617
OJIJ01000405
[OJIJ] seawater metagenome; Sea water
2011
2087
+
Ile
GAT
[ENA]
¢þ
>WENV182590638
OJIJ01000971
[OJIJ] seawater metagenome; Sea water
2016
1933
-
Tyr
GTA
[ENA]
¢þ
>WENV182590637
OJIJ01000971
[OJIJ] seawater metagenome; Sea water
2111
2036
-
Thr
TGT
[ENA]
¢þ
>WENV182590618
OJIJ01000405
[OJIJ] seawater metagenome; Sea water
2116
2191
+
Ala
TGC
[ENA]
¢þ
>WENV182590636
OJIJ01000971
[OJIJ] seawater metagenome; Sea water
2307
2232
-
Phe
GAA
[ENA]
¢þ
>WENV182590627
OJIJ01000649
[OJIJ] seawater metagenome; Sea water
2545
2621
+
fMet
CAT
[ENA]
¢þ
>WENV182590616
OJIJ01000388
[OJIJ] seawater metagenome; Sea water
2651
2553
-
SeC
TCA
[ENA]
¢þ
>WENV182590632
OJIJ01000827
[OJIJ] seawater metagenome; Sea water
2798
2885
+
Ser
GGA
[ENA]
¢þ
>WENV182590634
OJIJ01000865
[OJIJ] seawater metagenome; Sea water
3023
3099
+
Ile2
CAT
[ENA]
¢þ
>WENV182590609
OJIJ01000338
[OJIJ] seawater metagenome; Sea water
3148
3224
+
Met
CAT
[ENA]
¢þ
>WENV182590610
OJIJ01000338
[OJIJ] seawater metagenome; Sea water
3251
3335
+
Leu
TAG
[ENA]
¢þ
>WENV182590578
OJIJ01000015
[OJIJ] seawater metagenome; Sea water
3423
3347
-
Arg
ACG
[ENA]
¢þ
>WENV182590624
OJIJ01000612
[OJIJ] seawater metagenome; Sea water
3469
3555
+
Leu
TAA
[ENA]
¢þ
>WENV182590611
OJIJ01000364
[OJIJ] seawater metagenome; Sea water
3511
3435
-
Trp
CCA
[ENA]
¢þ
>WENV182590625
OJIJ01000612
[OJIJ] seawater metagenome; Sea water
3583
3671
+
Ser
TGA
[ENA]
¢þ
>WENV182590626
OJIJ01000612
[OJIJ] seawater metagenome; Sea water
3760
3834
+
Cys
GCA
[ENA]
¢þ
>WENV182590604
OJIJ01000217
[OJIJ] seawater metagenome; Sea water
3786
3861
+
Glu
TTC
[ENA]
¢þ
>WENV182590621
OJIJ01000522
[OJIJ] seawater metagenome; Sea water
4465
4391
-
Val
GAC
[ENA]
¢þ
>WENV182590620
OJIJ01000425
[OJIJ] seawater metagenome; Sea water
4867
4791
-
Arg
ACG
[ENA]
¢þ
>WENV182590619
OJIJ01000425
[OJIJ] seawater metagenome; Sea water
5104
5013
-
Ser
GCT
[ENA]
¢þ
>WENV182590606
OJIJ01000278
[OJIJ] seawater metagenome; Sea water
5367
5291
-
Arg
TCG
[ENA]
¢þ
>WENV182590612
OJIJ01000366
[OJIJ] seawater metagenome; Sea water
5367
5442
+
Phe
GAA
[ENA]
¢þ
>WENV182590613
OJIJ01000366
[OJIJ] seawater metagenome; Sea water
5457
5533
+
Thr
TGT
[ENA]
¢þ
>WENV182590614
OJIJ01000379
[OJIJ] seawater metagenome; Sea water
5647
5722
+
Gly
GCC
[ENA]
¢þ
>WENV182590615
OJIJ01000379
[OJIJ] seawater metagenome; Sea water
5787
5871
+
Leu
TAA
[ENA]
¢þ
>WENV182590602
OJIJ01000210
[OJIJ] seawater metagenome; Sea water
6091
6166
+
Ala
GGC
[ENA]
¢þ
>WENV182590596
OJIJ01000100
[OJIJ] seawater metagenome; Sea water
6103
6186
+
Leu
GAG
[ENA]
¢þ
>WENV182590603
OJIJ01000210
[OJIJ] seawater metagenome; Sea water
6289
6364
+
Glu
TTC
[ENA]
¢þ
>WENV182590605
OJIJ01000261
[OJIJ] seawater metagenome; Sea water
7383
7473
+
Ser
TGA
[ENA]
¢þ
>WENV182590597
OJIJ01000129
[OJIJ] seawater metagenome; Sea water
7681
7757
+
Ile
GAT
[ENA]
¢þ
>WENV182590598
OJIJ01000129
[OJIJ] seawater metagenome; Sea water
7807
7882
+
Ala
TGC
[ENA]
¢þ
>WENV182590600
OJIJ01000146
[OJIJ] seawater metagenome; Sea water
8211
8286
+
Thr
TGT
[ENA]
¢þ
>WENV182590590
OJIJ01000063
[OJIJ] seawater metagenome; Sea water
8281
8357
+
Arg
CCG
[ENA]
¢þ
>WENV182590574
OJIJ01000012
[OJIJ] seawater metagenome; Sea water
8824
8749
-
Glu
TTC
[ENA]
¢þ
>WENV182590573
OJIJ01000012
[OJIJ] seawater metagenome; Sea water
8957
8882
-
Ala
GGC
[ENA]
¢þ
>WENV182590584
OJIJ01000023
[OJIJ] seawater metagenome; Sea water
10008
9924
-
Leu
CAA
[ENA]
¢þ
>WENV182590591
OJIJ01000070
[OJIJ] seawater metagenome; Sea water
10636
10712
+
Pro
TGG
[ENA]
¢þ
>WENV182590592
OJIJ01000070
[OJIJ] seawater metagenome; Sea water
10723
10799
+
His
GTG
[ENA]
¢þ
>WENV182590593
OJIJ01000070
[OJIJ] seawater metagenome; Sea water
10814
10890
+
Arg
TCT
[ENA]
¢þ
>WENV182590599
OJIJ01000129
[OJIJ] seawater metagenome; Sea water
11286
11362
+
fMet
CAT
[ENA]
¢þ
>WENV182590589
OJIJ01000060
[OJIJ] seawater metagenome; Sea water
11958
11883
-
Lys
TTT
[ENA]
¢þ
>WENV182590577
OJIJ01000015
[OJIJ] seawater metagenome; Sea water
12280
12189
-
Ser
GCT
[ENA]
¢þ
>WENV182590595
OJIJ01000094
[OJIJ] seawater metagenome; Sea water
13211
13136
-
Thr
GGT
[ENA]
¢þ
>WENV182590585
OJIJ01000025
[OJIJ] seawater metagenome; Sea water
13475
13565
+
Ser
GCT
[ENA]
¢þ
>WENV182590594
OJIJ01000070
[OJIJ] seawater metagenome; Sea water
13555
13631
+
Gly
TCC
[ENA]
¢þ
>WENV182590586
OJIJ01000025
[OJIJ] seawater metagenome; Sea water
13602
13678
+
Met
CAT
[ENA]
¢þ
>WENV182590587
OJIJ01000025
[OJIJ] seawater metagenome; Sea water
13686
13762
+
Gly
TCC
[ENA]
¢þ
>WENV182590588
OJIJ01000025
[OJIJ] seawater metagenome; Sea water
15428
15503
+
Trp
CCA
[ENA]
¢þ
>WENV182590561
OJIJ01000003
[OJIJ] seawater metagenome; Sea water
17321
17396
+
Thr
CGT
[ENA]
¢þ
>WENV182590582
OJIJ01000022
[OJIJ] seawater metagenome; Sea water
20740
20664
-
Asp
GTC
[ENA]
¢þ
>WENV182590581
OJIJ01000022
[OJIJ] seawater metagenome; Sea water
20909
20834
-
Val
TAC
[ENA]
¢þ
>WENV182590580
OJIJ01000022
[OJIJ] seawater metagenome; Sea water
20986
20912
-
Glu
TTC
[ENA]
¢þ
>WENV182590579
OJIJ01000022
[OJIJ] seawater metagenome; Sea water
21093
21018
-
Lys
TTT
[ENA]
¢þ
>WENV182590572
OJIJ01000012
[OJIJ] seawater metagenome; Sea water
25259
25183
-
Asp
GTC
[ENA]
¢þ
>WENV182590571
OJIJ01000012
[OJIJ] seawater metagenome; Sea water
25339
25264
-
Val
TAC
[ENA]
¢þ
>WENV182590583
OJIJ01000023
[OJIJ] seawater metagenome; Sea water
27220
27309
+
Ser
TGA
[ENA]
¢þ
>WENV182590569
OJIJ01000006
[OJIJ] seawater metagenome; Sea water
30577
30501
-
Ile2
CAT
[ENA]
¢þ
>WENV182590570
OJIJ01000012
[OJIJ] seawater metagenome; Sea water
31869
31785
-
Leu
TAG
[ENA]
¢þ
>WENV182590576
OJIJ01000013
[OJIJ] seawater metagenome; Sea water
45101
45025
-
fMet
CAT
[ENA]
¢þ
>WENV182590575
OJIJ01000013
[OJIJ] seawater metagenome; Sea water
45209
45135
-
Gln
TTG
[ENA]
¢þ
>WENV182590568
OJIJ01000006
[OJIJ] seawater metagenome; Sea water
47095
47020
-
Phe
GAA
[ENA]
¢þ
>WENV182590564
OJIJ01000004
[OJIJ] seawater metagenome; Sea water
111280
111204
-
Arg
CCG
[ENA]
¢þ
>WENV182590547
OJIJ01000001
[OJIJ] seawater metagenome; Sea water
131104
131178
+
Gln
TTG
[ENA]
¢þ
>WENV182590548
OJIJ01000001
[OJIJ] seawater metagenome; Sea water
133530
133614
+
Tyr
GTA
[ENA]
¢þ
>WENV182590549
OJIJ01000001
[OJIJ] seawater metagenome; Sea water
133638
133711
+
Gly
TCC
[ENA]
¢þ
>WENV182590550
OJIJ01000001
[OJIJ] seawater metagenome; Sea water
133728
133802
+
Thr
GGT
[ENA]
¢þ
>WENV182590551
OJIJ01000001
[OJIJ] seawater metagenome; Sea water
135093
135168
+
Trp
CCA
[ENA]
¢þ
>WENV182590563
OJIJ01000003
[OJIJ] seawater metagenome; Sea water
142062
141986
-
Met
CAT
[ENA]
¢þ
>WENV182590565
OJIJ01000005
[OJIJ] seawater metagenome; Sea water
153296
153372
+
Pro
TGG
[ENA]
¢þ
>WENV182590566
OJIJ01000005
[OJIJ] seawater metagenome; Sea water
153391
153467
+
Arg
TCT
[ENA]
¢þ
>WENV182590567
OJIJ01000005
[OJIJ] seawater metagenome; Sea water
153545
153620
+
His
GTG
[ENA]
¢þ
>WENV182590562
OJIJ01000003
[OJIJ] seawater metagenome; Sea water
156951
156876
-
Thr
TGT
[ENA]
¢þ
>WENV182590557
OJIJ01000002
[OJIJ] seawater metagenome; Sea water
178629
178716
+
Ser
GGA
[ENA]
¢þ
>WENV182590552
OJIJ01000001
[OJIJ] seawater metagenome; Sea water
274886
274962
+
fMet
CAT
[ENA]
¢þ
>WENV182590553
OJIJ01000001
[OJIJ] seawater metagenome; Sea water
286615
286689
+
Gly
GCC
[ENA]
¢þ
>WENV182590554
OJIJ01000001
[OJIJ] seawater metagenome; Sea water
286738
286811
+
Cys
GCA
[ENA]
¢þ
>WENV182590560
OJIJ01000002
[OJIJ] seawater metagenome; Sea water
331566
331491
-
Asn
GTT
[ENA]
¢þ
>WENV182590558
OJIJ01000002
[OJIJ] seawater metagenome; Sea water
335036
335112
+
Val
GAC
[ENA]
¢þ
>WENV182590559
OJIJ01000002
[OJIJ] seawater metagenome; Sea water
342470
342546
+
Pro
GGG
[ENA]
¢þ
>WENV182590555
OJIJ01000001
[OJIJ] seawater metagenome; Sea water
411875
411960
+
Leu
GAG
[ENA]
¢þ
>WENV182590556
OJIJ01000001
[OJIJ] seawater metagenome; Sea water
453258
453182
-
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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