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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJJS] metagenome; faeces
HIT:
138 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182605700
OJJS01001837
[OJJS] metagenome; faeces
8
96
+
Ser
GGA
[ENA]
¢þ
>WENV182605687
OJJS01001183
[OJJS] metagenome; faeces
27
111
+
Leu
GAG
[ENA]
¢þ
>WENV182605657
OJJS01000053
[OJJS] metagenome; faeces
44
119
+
Lys
TTT
[ENA]
¢þ
>WENV182605723
OJJS01004783
[OJJS] metagenome; faeces
51
136
+
Ser
TGA
[ENA]
¢þ
>WENV182605704
OJJS01001941
[OJJS] metagenome; faeces
63
136
+
Gly
CCC
[ENA]
¢þ
>WENV182605701
OJJS01001881
[OJJS] metagenome; faeces
69
144
+
His
GTG
[ENA]
¢þ
>WENV182605741
OJJS01010265
[OJJS] metagenome; faeces
77
154
+
Leu
TAA
[ENA]
¢þ
>WENV182605706
OJJS01001954
[OJJS] metagenome; faeces
79
166
+
Ser
GGA
[ENA]
¢þ
>WENV182605711
OJJS01002106
[OJJS] metagenome; faeces
86
1
-
Ser
TGA
[ENA]
¢þ
>WENV182605733
OJJS01007144
[OJJS] metagenome; faeces
88
180
+
Ser
GCT
[ENA]
¢þ
>WENV182605739
OJJS01009641
[OJJS] metagenome; faeces
90
9
-
Leu
CAG
[ENA]
¢þ
>WENV182605652
OJJS01000039
[OJJS] metagenome; faeces
97
22
-
Asn
GTT
[ENA]
¢þ
>WENV182605737
OJJS01009279
[OJJS] metagenome; faeces
100
26
-
Thr
TGT
[ENA]
¢þ
>WENV182605726
OJJS01004835
[OJJS] metagenome; faeces
117
28
-
Ser
TGA
[ENA]
¢þ
>WENV182605688
OJJS01001183
[OJJS] metagenome; faeces
129
202
+
Gly
GCC
[ENA]
¢þ
>WENV182605629
OJJS01000016
[OJJS] metagenome; faeces
140
215
+
Trp
CCA
[ENA]
¢þ
>WENV182605736
OJJS01007450
[OJJS] metagenome; faeces
151
225
+
Lys
CTT
[ENA]
¢þ
>WENV182605702
OJJS01001881
[OJJS] metagenome; faeces
167
253
+
Leu
CAG
[ENA]
¢þ
>WENV182605730
OJJS01005587
[OJJS] metagenome; faeces
169
84
-
Leu
TAA
[ENA]
¢þ
>WENV182605734
OJJS01007144
[OJJS] metagenome; faeces
185
261
+
Arg
ACG
[ENA]
¢þ
>WENV182605725
OJJS01004835
[OJJS] metagenome; faeces
202
129
-
Glu
TTC
[ENA]
¢þ
>WENV182605738
OJJS01009641
[OJJS] metagenome; faeces
207
134
-
Gly
GCC
[ENA]
¢þ
>WENV182605732
OJJS01006376
[OJJS] metagenome; faeces
216
133
-
Tyr
GTA
[ENA]
¢þ
>WENV182605708
OJJS01002045
[OJJS] metagenome; faeces
221
146
-
Val
TAC
[ENA]
¢þ
>WENV182605689
OJJS01001183
[OJJS] metagenome; faeces
234
316
+
Leu
CAG
[ENA]
¢þ
>WENV182605720
OJJS01004179
[OJJS] metagenome; faeces
242
167
-
Thr
TGT
[ENA]
¢þ
>WENV182605729
OJJS01005587
[OJJS] metagenome; faeces
258
185
-
Gly
GCC
[ENA]
¢þ
>WENV182605699
OJJS01001781
[OJJS] metagenome; faeces
260
332
+
Glu
TTC
[ENA]
¢þ
>WENV182605721
OJJS01004348
[OJJS] metagenome; faeces
263
337
+
Glu
TTC
[ENA]
¢þ
>WENV182605656
OJJS01000051
[OJJS] metagenome; faeces
272
347
+
Asn
GTT
[ENA]
¢þ
>WENV182605724
OJJS01004835
[OJJS] metagenome; faeces
290
215
-
Ile
GAT
[ENA]
¢þ
>WENV182605703
OJJS01001881
[OJJS] metagenome; faeces
299
375
+
Pro
TGG
[ENA]
¢þ
>WENV182605719
OJJS01003781
[OJJS] metagenome; faeces
322
396
+
Lys
TTT
[ENA]
¢þ
>WENV182605673
OJJS01000115
[OJJS] metagenome; faeces
328
253
-
Thr
GGT
[ENA]
¢þ
>WENV182605707
OJJS01002045
[OJJS] metagenome; faeces
328
253
-
Val
TAC
[ENA]
¢þ
>WENV182605740
OJJS01009802
[OJJS] metagenome; faeces
330
248
-
Leu
TAG
[ENA]
¢þ
>WENV182605690
OJJS01001183
[OJJS] metagenome; faeces
354
427
+
Gly
GCC
[ENA]
¢þ
>WENV182605731
OJJS01005798
[OJJS] metagenome; faeces
388
472
+
Leu
CAA
[ENA]
¢þ
>WENV182605672
OJJS01000115
[OJJS] metagenome; faeces
409
335
-
Gly
TCC
[ENA]
¢þ
>WENV182605651
OJJS01000039
[OJJS] metagenome; faeces
418
343
-
Asn
GTT
[ENA]
¢þ
>WENV182605728
OJJS01004912
[OJJS] metagenome; faeces
442
367
-
Ala
GGC
[ENA]
¢þ
>WENV182605735
OJJS01007144
[OJJS] metagenome; faeces
444
520
+
Arg
ACG
[ENA]
¢þ
>WENV182605742
OJJS01010470
[OJJS] metagenome; faeces
464
388
-
Arg
TCT
[ENA]
¢þ
>WENV182605715
OJJS01003444
[OJJS] metagenome; faeces
477
551
+
Ala
GGC
[ENA]
¢þ
>WENV182605709
OJJS01002074
[OJJS] metagenome; faeces
524
451
-
Gln
TTG
[ENA]
¢þ
>WENV182605727
OJJS01004912
[OJJS] metagenome; faeces
559
484
-
Ala
GGC
[ENA]
¢þ
>WENV182605714
OJJS01002784
[OJJS] metagenome; faeces
570
644
+
Ile2
CAT
[ENA]
¢þ
>WENV182605671
OJJS01000115
[OJJS] metagenome; faeces
596
512
-
Tyr
GTA
[ENA]
¢þ
>WENV182605717
OJJS01003543
[OJJS] metagenome; faeces
606
679
+
Gly
GCC
[ENA]
¢þ
>WENV182605722
OJJS01004435
[OJJS] metagenome; faeces
617
541
-
Pro
GGG
[ENA]
¢þ
>WENV182605650
OJJS01000039
[OJJS] metagenome; faeces
652
577
-
Asn
GTT
[ENA]
¢þ
>WENV182605679
OJJS01000442
[OJJS] metagenome; faeces
663
589
-
Ile2
CAT
[ENA]
¢þ
>WENV182605697
OJJS01001501
[OJJS] metagenome; faeces
683
610
-
Pro
CGG
[ENA]
¢þ
>WENV182605670
OJJS01000115
[OJJS] metagenome; faeces
688
613
-
Thr
TGT
[ENA]
¢þ
>WENV182605718
OJJS01003543
[OJJS] metagenome; faeces
693
777
+
Leu
TAA
[ENA]
¢þ
>WENV182605716
OJJS01003522
[OJJS] metagenome; faeces
747
674
-
fMet
CAT
[ENA]
¢þ
>WENV182605713
OJJS01002614
[OJJS] metagenome; faeces
766
692
-
Ile
GAT
[ENA]
¢þ
>WENV182605696
OJJS01001501
[OJJS] metagenome; faeces
772
699
-
Phe
GAA
[ENA]
¢þ
>WENV182605710
OJJS01002099
[OJJS] metagenome; faeces
846
932
+
Leu
GAG
[ENA]
¢þ
>WENV182605676
OJJS01000238
[OJJS] metagenome; faeces
851
779
-
Arg
CCT
[ENA]
¢þ
>WENV182605686
OJJS01001065
[OJJS] metagenome; faeces
872
946
+
Thr
TGT
[ENA]
¢þ
>WENV182605681
OJJS01000612
[OJJS] metagenome; faeces
903
828
-
Pro
GGG
[ENA]
¢þ
>WENV182605695
OJJS01001347
[OJJS] metagenome; faeces
962
887
-
Lys
TTT
[ENA]
¢þ
>WENV182605698
OJJS01001600
[OJJS] metagenome; faeces
979
1054
+
Asn
GTT
[ENA]
¢þ
>WENV182605705
OJJS01001953
[OJJS] metagenome; faeces
989
1075
+
Leu
CAG
[ENA]
¢þ
>WENV182605712
OJJS01002589
[OJJS] metagenome; faeces
996
911
-
Ser
TGA
[ENA]
¢þ
>WENV182605694
OJJS01001347
[OJJS] metagenome; faeces
1042
967
-
Val
TAC
[ENA]
¢þ
>WENV182605654
OJJS01000042
[OJJS] metagenome; faeces
1105
1021
-
Tyr
GTA
[ENA]
¢þ
>WENV182605675
OJJS01000213
[OJJS] metagenome; faeces
1148
1221
+
Trp
CCA
[ENA]
¢þ
>WENV182605693
OJJS01001347
[OJJS] metagenome; faeces
1164
1089
-
Val
TAC
[ENA]
¢þ
>WENV182605682
OJJS01000819
[OJJS] metagenome; faeces
1228
1301
+
Lys
CTT
[ENA]
¢þ
>WENV182605692
OJJS01001347
[OJJS] metagenome; faeces
1284
1209
-
Val
TAC
[ENA]
¢þ
>WENV182605685
OJJS01000995
[OJJS] metagenome; faeces
1308
1233
-
Pro
TGG
[ENA]
¢þ
>WENV182605683
OJJS01000819
[OJJS] metagenome; faeces
1332
1405
+
Lys
CTT
[ENA]
¢þ
>WENV182605691
OJJS01001332
[OJJS] metagenome; faeces
1340
1265
-
Thr
GGT
[ENA]
¢þ
>WENV182605684
OJJS01000995
[OJJS] metagenome; faeces
1417
1342
-
Pro
TGG
[ENA]
¢þ
>WENV182605677
OJJS01000268
[OJJS] metagenome; faeces
1606
1522
-
Leu
CAA
[ENA]
¢þ
>WENV182605678
OJJS01000282
[OJJS] metagenome; faeces
1741
1817
+
fMet
CAT
[ENA]
¢þ
>WENV182605680
OJJS01000503
[OJJS] metagenome; faeces
1939
1864
-
Phe
GAA
[ENA]
¢þ
>WENV182605653
OJJS01000041
[OJJS] metagenome; faeces
2854
2765
-
Ser
GGA
[ENA]
¢þ
>WENV182605667
OJJS01000098
[OJJS] metagenome; faeces
2916
2990
+
Ile
GAT
[ENA]
¢þ
>WENV182605668
OJJS01000098
[OJJS] metagenome; faeces
3044
3120
+
Ala
TGC
[ENA]
¢þ
>WENV182605661
OJJS01000073
[OJJS] metagenome; faeces
3194
3269
+
Lys
CTT
[ENA]
¢þ
>WENV182605662
OJJS01000073
[OJJS] metagenome; faeces
3272
3346
+
Gly
TCC
[ENA]
¢þ
>WENV182605674
OJJS01000120
[OJJS] metagenome; faeces
3403
3328
-
Glu
TTC
[ENA]
¢þ
>WENV182605660
OJJS01000070
[OJJS] metagenome; faeces
3633
3558
-
Thr
CGT
[ENA]
¢þ
>WENV182605669
OJJS01000115
[OJJS] metagenome; faeces
4426
4351
-
Thr
GGT
[ENA]
¢þ
>WENV182605659
OJJS01000069
[OJJS] metagenome; faeces
7126
7202
+
Val
GAC
[ENA]
¢þ
>WENV182605666
OJJS01000093
[OJJS] metagenome; faeces
7242
7315
+
Gly
CCC
[ENA]
¢þ
>WENV182605665
OJJS01000090
[OJJS] metagenome; faeces
7440
7364
-
Arg
TCT
[ENA]
¢þ
>WENV182605658
OJJS01000055
[OJJS] metagenome; faeces
9289
9202
-
Ser
TGA
[ENA]
¢þ
>WENV182605610
OJJS01000007
[OJJS] metagenome; faeces
10817
10893
+
fMet
CAT
[ENA]
¢þ
>WENV182605611
OJJS01000007
[OJJS] metagenome; faeces
10977
11053
+
fMet
CAT
[ENA]
¢þ
>WENV182605612
OJJS01000007
[OJJS] metagenome; faeces
11080
11156
+
fMet
CAT
[ENA]
¢þ
>WENV182605624
OJJS01000010
[OJJS] metagenome; faeces
13555
13480
-
Phe
GAA
[ENA]
¢þ
>WENV182605664
OJJS01000073
[OJJS] metagenome; faeces
14718
14643
-
Thr
TGT
[ENA]
¢þ
>WENV182605663
OJJS01000073
[OJJS] metagenome; faeces
14811
14724
-
Ser
TGA
[ENA]
¢þ
>WENV182605642
OJJS01000021
[OJJS] metagenome; faeces
16936
16862
-
Gln
CTG
[ENA]
¢þ
>WENV182605641
OJJS01000021
[OJJS] metagenome; faeces
17034
16958
-
Met
CAT
[ENA]
¢þ
>WENV182605640
OJJS01000021
[OJJS] metagenome; faeces
17146
17072
-
Gln
TTG
[ENA]
¢þ
>WENV182605639
OJJS01000021
[OJJS] metagenome; faeces
17269
17195
-
Gln
TTG
[ENA]
¢þ
>WENV182605638
OJJS01000021
[OJJS] metagenome; faeces
17393
17309
-
Leu
TAG
[ENA]
¢þ
>WENV182605637
OJJS01000021
[OJJS] metagenome; faeces
17478
17402
-
Met
CAT
[ENA]
¢þ
>WENV182605605
OJJS01000001
[OJJS] metagenome; faeces
22521
22610
+
Leu
GAG
[ENA]
¢þ
>WENV182605606
OJJS01000001
[OJJS] metagenome; faeces
22668
22744
+
fMet
CAT
[ENA]
¢þ
>WENV182605643
OJJS01000022
[OJJS] metagenome; faeces
23938
24012
+
Arg
CCT
[ENA]
¢þ
>WENV182605613
OJJS01000008
[OJJS] metagenome; faeces
27231
27307
+
Pro
GGG
[ENA]
¢þ
>WENV182605645
OJJS01000028
[OJJS] metagenome; faeces
28480
28572
+
Ser
GCT
[ENA]
¢þ
>WENV182605646
OJJS01000028
[OJJS] metagenome; faeces
28581
28657
+
Arg
ACG
[ENA]
¢þ
>WENV182605647
OJJS01000028
[OJJS] metagenome; faeces
28751
28827
+
Arg
ACG
[ENA]
¢þ
>WENV182605648
OJJS01000028
[OJJS] metagenome; faeces
28880
28956
+
Arg
ACG
[ENA]
¢þ
>WENV182605649
OJJS01000028
[OJJS] metagenome; faeces
28981
29057
+
Arg
ACG
[ENA]
¢þ
>WENV182605655
OJJS01000047
[OJJS] metagenome; faeces
29062
28986
-
Asp
GTC
[ENA]
¢þ
>WENV182605630
OJJS01000016
[OJJS] metagenome; faeces
33542
33618
+
Arg
CCG
[ENA]
¢þ
>WENV182605631
OJJS01000016
[OJJS] metagenome; faeces
33685
33760
+
His
GTG
[ENA]
¢þ
>WENV182605632
OJJS01000016
[OJJS] metagenome; faeces
33797
33883
+
Leu
CAG
[ENA]
¢þ
>WENV182605633
OJJS01000016
[OJJS] metagenome; faeces
33906
33982
+
Pro
TGG
[ENA]
¢þ
>WENV182605644
OJJS01000026
[OJJS] metagenome; faeces
33962
34056
+
SeC
TCA
[ENA]
¢þ
>WENV182605625
OJJS01000012
[OJJS] metagenome; faeces
40308
40384
+
Asp
GTC
[ENA]
¢þ
>WENV182605635
OJJS01000021
[OJJS] metagenome; faeces
59072
59147
+
Lys
TTT
[ENA]
¢þ
>WENV182605636
OJJS01000021
[OJJS] metagenome; faeces
59173
59248
+
Lys
TTT
[ENA]
¢þ
>WENV182605627
OJJS01000015
[OJJS] metagenome; faeces
63048
63134
+
Leu
CAG
[ENA]
¢þ
>WENV182605628
OJJS01000015
[OJJS] metagenome; faeces
63183
63269
+
Leu
CAG
[ENA]
¢þ
>WENV182605623
OJJS01000008
[OJJS] metagenome; faeces
63423
63337
-
Leu
TAA
[ENA]
¢þ
>WENV182605622
OJJS01000008
[OJJS] metagenome; faeces
63503
63430
-
Cys
GCA
[ENA]
¢þ
>WENV182605621
OJJS01000008
[OJJS] metagenome; faeces
63580
63505
-
Gly
GCC
[ENA]
¢þ
>WENV182605634
OJJS01000016
[OJJS] metagenome; faeces
63623
63698
+
Gly
GCC
[ENA]
¢þ
>WENV182605607
OJJS01000001
[OJJS] metagenome; faeces
73718
73801
+
Leu
CAA
[ENA]
¢þ
>WENV182605620
OJJS01000008
[OJJS] metagenome; faeces
80287
80212
-
Lys
TTT
[ENA]
¢þ
>WENV182605619
OJJS01000008
[OJJS] metagenome; faeces
80388
80313
-
Lys
TTT
[ENA]
¢þ
>WENV182605618
OJJS01000008
[OJJS] metagenome; faeces
80496
80421
-
Val
TAC
[ENA]
¢þ
>WENV182605617
OJJS01000008
[OJJS] metagenome; faeces
80609
80534
-
Val
TAC
[ENA]
¢þ
>WENV182605616
OJJS01000008
[OJJS] metagenome; faeces
80740
80665
-
Val
TAC
[ENA]
¢þ
>WENV182605609
OJJS01000003
[OJJS] metagenome; faeces
82313
82389
+
Pro
TGG
[ENA]
¢þ
>WENV182605614
OJJS01000008
[OJJS] metagenome; faeces
82623
82698
+
Ala
GGC
[ENA]
¢þ
>WENV182605615
OJJS01000008
[OJJS] metagenome; faeces
82739
82814
+
Ala
GGC
[ENA]
¢þ
>WENV182605626
OJJS01000012
[OJJS] metagenome; faeces
84069
83994
-
Phe
GAA
[ENA]
¢þ
>WENV182605608
OJJS01000002
[OJJS] metagenome; faeces
134458
134534
+
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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