This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJKN] metagenome; surface
HIT:
150 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182623786
OJKN01005483
[OJKN] metagenome; surface
17
91
+
Asn
GTT
[ENA]
¢þ
>WENV182623799
OJKN01007898
[OJKN] metagenome; surface
21
95
+
Met
CAT
[ENA]
¢þ
>WENV182623704
OJKN01000046
[OJKN] metagenome; surface
23
98
+
Val
TAC
[ENA]
¢þ
>WENV182623754
OJKN01001173
[OJKN] metagenome; surface
40
116
+
Arg
TCT
[ENA]
¢þ
>WENV182623766
OJKN01002672
[OJKN] metagenome; surface
46
120
+
Gln
TTG
[ENA]
¢þ
>WENV182623740
OJKN01000332
[OJKN] metagenome; surface
65
141
+
Asp
GTC
[ENA]
¢þ
>WENV182623702
OJKN01000034
[OJKN] metagenome; surface
75
1
-
Pro
GGG
[ENA]
¢þ
>WENV182623736
OJKN01000214
[OJKN] metagenome; surface
80
165
+
Ser
TGA
[ENA]
¢þ
>WENV182623794
OJKN01006371
[OJKN] metagenome; surface
90
164
+
Arg
TCT
[ENA]
¢þ
>WENV182623800
OJKN01007965
[OJKN] metagenome; surface
95
20
-
Thr
CGT
[ENA]
¢þ
>WENV182623787
OJKN01005483
[OJKN] metagenome; surface
95
183
+
Leu
TAA
[ENA]
¢þ
>WENV182623705
OJKN01000046
[OJKN] metagenome; surface
105
180
+
Thr
TGT
[ENA]
¢þ
>WENV182623777
OJKN01003805
[OJKN] metagenome; surface
120
48
-
His
GTG
[ENA]
¢þ
>WENV182623779
OJKN01004213
[OJKN] metagenome; surface
123
196
+
Trp
CCA
[ENA]
¢þ
>WENV182623767
OJKN01002672
[OJKN] metagenome; surface
124
196
+
Lys
TTT
[ENA]
¢þ
>WENV182623755
OJKN01001173
[OJKN] metagenome; surface
124
200
+
Gln
TTG
[ENA]
¢þ
>WENV182623773
OJKN01003229
[OJKN] metagenome; surface
136
60
-
Asp
GTC
[ENA]
¢þ
>WENV182623805
OJKN01008492
[OJKN] metagenome; surface
137
62
-
Trp
CCA
[ENA]
¢þ
>WENV182623785
OJKN01005448
[OJKN] metagenome; surface
141
69
-
Lys
CTT
[ENA]
¢þ
>WENV182623801
OJKN01008254
[OJKN] metagenome; surface
159
230
+
Glu
TTC
[ENA]
¢þ
>WENV182623782
OJKN01005171
[OJKN] metagenome; surface
164
237
+
Lys
TTT
[ENA]
¢þ
>WENV182623758
OJKN01001392
[OJKN] metagenome; surface
178
104
-
Gly
TCC
[ENA]
¢þ
>WENV182623784
OJKN01005240
[OJKN] metagenome; surface
182
108
-
Met
CAT
[ENA]
¢þ
>WENV182623706
OJKN01000046
[OJKN] metagenome; surface
185
268
+
Tyr
GTA
[ENA]
¢þ
>WENV182623788
OJKN01005483
[OJKN] metagenome; surface
188
264
+
fMet
CAT
[ENA]
¢þ
>WENV182623751
OJKN01000652
[OJKN] metagenome; surface
195
271
+
Ile2
CAT
[ENA]
¢þ
>WENV182623756
OJKN01001173
[OJKN] metagenome; surface
205
280
+
Lys
TTT
[ENA]
¢þ
>WENV182623772
OJKN01003208
[OJKN] metagenome; surface
213
285
+
Arg
CCT
[ENA]
¢þ
>WENV182623768
OJKN01002672
[OJKN] metagenome; surface
216
298
+
Leu
TAG
[ENA]
¢þ
>WENV182623728
OJKN01000129
[OJKN] metagenome; surface
232
148
-
Ser
TGA
[ENA]
¢þ
>WENV182623808
OJKN01009094
[OJKN] metagenome; surface
234
307
+
Val
TAC
[ENA]
¢þ
>WENV182623730
OJKN01000166
[OJKN] metagenome; surface
235
311
+
Ile
GAT
[ENA]
¢þ
>WENV182623749
OJKN01000505
[OJKN] metagenome; surface
248
178
-
Cys
GCA
[ENA]
¢þ
>WENV182623733
OJKN01000181
[OJKN] metagenome; surface
255
330
+
Glu
TTC
[ENA]
¢þ
>WENV182623722
OJKN01000101
[OJKN] metagenome; surface
257
331
+
Asn
GTT
[ENA]
¢þ
>WENV182623741
OJKN01000461
[OJKN] metagenome; surface
269
344
+
Lys
TTT
[ENA]
¢þ
>WENV182623802
OJKN01008254
[OJKN] metagenome; surface
274
347
+
Glu
CTC
[ENA]
¢þ
>WENV182623770
OJKN01002976
[OJKN] metagenome; surface
277
206
-
Gly
CCC
[ENA]
¢þ
>WENV182623707
OJKN01000046
[OJKN] metagenome; surface
277
350
+
Trp
CCA
[ENA]
¢þ
>WENV182623732
OJKN01000171
[OJKN] metagenome; surface
278
208
-
Val
TAC
[ENA]
¢þ
>WENV182623757
OJKN01001173
[OJKN] metagenome; surface
286
375
+
Ser
CGA
[ENA]
¢þ
>WENV182623789
OJKN01005483
[OJKN] metagenome; surface
289
365
+
Met
CAT
[ENA]
¢þ
>WENV182623797
OJKN01007661
[OJKN] metagenome; surface
293
387
+
SeC
TCA
[ENA]
¢þ
>WENV182623807
OJKN01009081
[OJKN] metagenome; surface
301
227
-
Ile2
CAT
[ENA]
¢þ
>WENV182623753
OJKN01000810
[OJKN] metagenome; surface
307
234
-
Asn
GTT
[ENA]
¢þ
>WENV182623762
OJKN01002288
[OJKN] metagenome; surface
313
386
+
Asn
GTT
[ENA]
¢þ
>WENV182623760
OJKN01001908
[OJKN] metagenome; surface
315
242
-
Lys
TTT
[ENA]
¢þ
>WENV182623731
OJKN01000166
[OJKN] metagenome; surface
340
415
+
Ala
TGC
[ENA]
¢þ
>WENV182623796
OJKN01006699
[OJKN] metagenome; surface
345
259
-
Leu
GAG
[ENA]
¢þ
>WENV182623748
OJKN01000505
[OJKN] metagenome; surface
345
272
-
Gln
TTG
[ENA]
¢þ
>WENV182623804
OJKN01008492
[OJKN] metagenome; surface
349
276
-
Met
CAT
[ENA]
¢þ
>WENV182623727
OJKN01000129
[OJKN] metagenome; surface
353
271
-
Tyr
GTA
[ENA]
¢þ
>WENV182623708
OJKN01000046
[OJKN] metagenome; surface
353
428
+
His
GTG
[ENA]
¢þ
>WENV182623769
OJKN01002976
[OJKN] metagenome; surface
354
279
-
Thr
CGT
[ENA]
¢þ
>WENV182623765
OJKN01002572
[OJKN] metagenome; surface
355
426
+
Val
GAC
[ENA]
¢þ
>WENV182623752
OJKN01000810
[OJKN] metagenome; surface
384
313
-
Glu
TTC
[ENA]
¢þ
>WENV182623793
OJKN01006361
[OJKN] metagenome; surface
407
334
-
Ala
TGC
[ENA]
¢þ
>WENV182623798
OJKN01007688
[OJKN] metagenome; surface
413
340
-
Thr
TGT
[ENA]
¢þ
>WENV182623759
OJKN01001848
[OJKN] metagenome; surface
417
491
+
Asp
GTC
[ENA]
¢þ
>WENV182623790
OJKN01005483
[OJKN] metagenome; surface
423
497
+
Glu
TTC
[ENA]
¢þ
>WENV182623747
OJKN01000505
[OJKN] metagenome; surface
431
357
-
His
GTG
[ENA]
¢þ
>WENV182623806
OJKN01008905
[OJKN] metagenome; surface
441
367
-
Thr
TGT
[ENA]
¢þ
>WENV182623709
OJKN01000046
[OJKN] metagenome; surface
446
519
+
Gly
TCC
[ENA]
¢þ
>WENV182623803
OJKN01008492
[OJKN] metagenome; surface
461
388
-
Thr
GGT
[ENA]
¢þ
>WENV182623795
OJKN01006604
[OJKN] metagenome; surface
465
380
-
Ser
TGA
[ENA]
¢þ
>WENV182623792
OJKN01005721
[OJKN] metagenome; surface
466
540
+
Arg
ACG
[ENA]
¢þ
>WENV182623783
OJKN01005171
[OJKN] metagenome; surface
471
397
-
Thr
TGT
[ENA]
¢þ
>WENV182623791
OJKN01005483
[OJKN] metagenome; surface
505
580
+
Val
TAC
[ENA]
¢þ
>WENV182623746
OJKN01000505
[OJKN] metagenome; surface
516
444
-
Trp
CCA
[ENA]
¢þ
>WENV182623726
OJKN01000129
[OJKN] metagenome; surface
519
445
-
Ala
TGC
[ENA]
¢þ
>WENV182623775
OJKN01003773
[OJKN] metagenome; surface
521
595
+
Glu
TTC
[ENA]
¢þ
>WENV182623720
OJKN01000065
[OJKN] metagenome; surface
522
598
+
Ile
GAT
[ENA]
¢þ
>WENV182623778
OJKN01003966
[OJKN] metagenome; surface
527
597
+
Gly
GCC
[ENA]
¢þ
>WENV182623780
OJKN01004623
[OJKN] metagenome; surface
535
608
+
Asn
GTT
[ENA]
¢þ
>WENV182623781
OJKN01005010
[OJKN] metagenome; surface
538
611
+
Leu
TAG
[ENA]
¢þ
>WENV182623764
OJKN01002517
[OJKN] metagenome; surface
555
640
+
Leu
CAG
[ENA]
¢þ
>WENV182623776
OJKN01003773
[OJKN] metagenome; surface
599
674
+
Val
TAC
[ENA]
¢þ
>WENV182623745
OJKN01000505
[OJKN] metagenome; surface
601
519
-
Tyr
GTA
[ENA]
¢þ
>WENV182623771
OJKN01003167
[OJKN] metagenome; surface
609
697
+
Ser
GGA
[ENA]
¢þ
>WENV182623774
OJKN01003432
[OJKN] metagenome; surface
639
566
-
Gly
CCC
[ENA]
¢þ
>WENV182623761
OJKN01002018
[OJKN] metagenome; surface
643
716
+
Lys
CTT
[ENA]
¢þ
>WENV182623744
OJKN01000505
[OJKN] metagenome; surface
786
711
-
Asp
GTC
[ENA]
¢þ
>WENV182623695
OJKN01000016
[OJKN] metagenome; surface
798
724
-
Ile
GAT
[ENA]
¢þ
>WENV182623763
OJKN01002426
[OJKN] metagenome; surface
806
721
-
Ser
TGA
[ENA]
¢þ
>WENV182623743
OJKN01000505
[OJKN] metagenome; surface
866
792
-
Glu
TTC
[ENA]
¢þ
>WENV182623739
OJKN01000316
[OJKN] metagenome; surface
942
860
-
Leu
CAA
[ENA]
¢þ
>WENV182623742
OJKN01000505
[OJKN] metagenome; surface
942
868
-
Asn
GTT
[ENA]
¢þ
>WENV182623690
OJKN01000013
[OJKN] metagenome; surface
959
883
-
fMet
CAT
[ENA]
¢þ
>WENV182623729
OJKN01000142
[OJKN] metagenome; surface
970
900
-
Met
CAT
[ENA]
¢þ
>WENV182623750
OJKN01000579
[OJKN] metagenome; surface
1289
1362
+
Pro
TGG
[ENA]
¢þ
>WENV182623737
OJKN01000315
[OJKN] metagenome; surface
1310
1394
+
Leu
TAG
[ENA]
¢þ
>WENV182623738
OJKN01000315
[OJKN] metagenome; surface
1582
1657
+
Arg
TCG
[ENA]
¢þ
>WENV182623734
OJKN01000203
[OJKN] metagenome; surface
1862
1936
+
Ile
GAT
[ENA]
¢þ
>WENV182623735
OJKN01000203
[OJKN] metagenome; surface
1958
2032
+
Ala
TGC
[ENA]
¢þ
>WENV182623710
OJKN01000046
[OJKN] metagenome; surface
2234
2308
+
Ala
TGC
[ENA]
¢þ
>WENV182623721
OJKN01000075
[OJKN] metagenome; surface
2253
2178
-
Ala
TGC
[ENA]
¢þ
>WENV182623719
OJKN01000063
[OJKN] metagenome; surface
2303
2226
-
Leu
TAA
[ENA]
¢þ
>WENV182623725
OJKN01000129
[OJKN] metagenome; surface
2874
2949
+
Lys
TTT
[ENA]
¢þ
>WENV182623667
OJKN01000002
[OJKN] metagenome; surface
3010
2936
-
Leu
TAA
[ENA]
¢þ
>WENV182623724
OJKN01000119
[OJKN] metagenome; surface
3115
3042
-
Asp
GTC
[ENA]
¢þ
>WENV182623723
OJKN01000101
[OJKN] metagenome; surface
3160
3233
+
Thr
TGT
[ENA]
¢þ
>WENV182623703
OJKN01000041
[OJKN] metagenome; surface
3669
3596
-
Gly
TCC
[ENA]
¢þ
>WENV182623711
OJKN01000046
[OJKN] metagenome; surface
5527
5599
+
Val
TAC
[ENA]
¢þ
>WENV182623712
OJKN01000046
[OJKN] metagenome; surface
5602
5674
+
Asp
GTC
[ENA]
¢þ
>WENV182623713
OJKN01000046
[OJKN] metagenome; surface
5693
5765
+
Lys
TTT
[ENA]
¢þ
>WENV182623714
OJKN01000046
[OJKN] metagenome; surface
5770
5853
+
Leu
TAG
[ENA]
¢þ
>WENV182623715
OJKN01000046
[OJKN] metagenome; surface
5871
5943
+
Thr
TGT
[ENA]
¢þ
>WENV182623716
OJKN01000046
[OJKN] metagenome; surface
5966
6040
+
Gly
GCC
[ENA]
¢þ
>WENV182623717
OJKN01000046
[OJKN] metagenome; surface
6048
6136
+
Leu
TAA
[ENA]
¢þ
>WENV182623718
OJKN01000046
[OJKN] metagenome; surface
6149
6225
+
Arg
ACG
[ENA]
¢þ
>WENV182623700
OJKN01000032
[OJKN] metagenome; surface
7948
8022
+
Lys
CTT
[ENA]
¢þ
>WENV182623696
OJKN01000025
[OJKN] metagenome; surface
8399
8481
+
Tyr
GTA
[ENA]
¢þ
>WENV182623697
OJKN01000025
[OJKN] metagenome; surface
8682
8755
+
Thr
GGT
[ENA]
¢þ
>WENV182623698
OJKN01000025
[OJKN] metagenome; surface
8820
8894
+
Met
CAT
[ENA]
¢þ
>WENV182623701
OJKN01000032
[OJKN] metagenome; surface
12883
12966
+
Leu
TAG
[ENA]
¢þ
>WENV182623699
OJKN01000025
[OJKN] metagenome; surface
12886
12959
+
Trp
CCA
[ENA]
¢þ
>WENV182623678
OJKN01000007
[OJKN] metagenome; surface
13943
14019
+
Pro
CGG
[ENA]
¢þ
>WENV182623684
OJKN01000008
[OJKN] metagenome; surface
14246
14161
-
Ser
GGA
[ENA]
¢þ
>WENV182623694
OJKN01000015
[OJKN] metagenome; surface
15196
15121
-
Pro
TGG
[ENA]
¢þ
>WENV182623689
OJKN01000013
[OJKN] metagenome; surface
22016
21944
-
Arg
CCG
[ENA]
¢þ
>WENV182623666
OJKN01000002
[OJKN] metagenome; surface
22246
22167
-
Gln
TTG
[ENA]
¢þ
>WENV182623675
OJKN01000006
[OJKN] metagenome; surface
33638
33710
+
Gln
CTG
[ENA]
¢þ
>WENV182623676
OJKN01000006
[OJKN] metagenome; surface
33846
33921
+
Glu
CTC
[ENA]
¢þ
>WENV182623682
OJKN01000007
[OJKN] metagenome; surface
41863
41776
-
Ser
CGA
[ENA]
¢þ
>WENV182623677
OJKN01000006
[OJKN] metagenome; surface
43330
43256
-
Val
TAC
[ENA]
¢þ
>WENV182623693
OJKN01000015
[OJKN] metagenome; surface
47822
47747
-
Arg
TCT
[ENA]
¢þ
>WENV182623692
OJKN01000015
[OJKN] metagenome; surface
49889
49964
+
His
GTG
[ENA]
¢þ
>WENV182623681
OJKN01000007
[OJKN] metagenome; surface
50117
50044
-
Arg
ACG
[ENA]
¢þ
>WENV182623680
OJKN01000007
[OJKN] metagenome; surface
50437
50347
-
Ser
GCT
[ENA]
¢þ
>WENV182623679
OJKN01000007
[OJKN] metagenome; surface
57768
57683
-
Ser
TGA
[ENA]
¢þ
>WENV182623665
OJKN01000002
[OJKN] metagenome; surface
58292
58219
-
Ala
CGC
[ENA]
¢þ
>WENV182623691
OJKN01000014
[OJKN] metagenome; surface
58393
58466
+
Ala
TGC
[ENA]
¢þ
>WENV182623688
OJKN01000010
[OJKN] metagenome; surface
61126
61052
-
Lys
TTT
[ENA]
¢þ
>WENV182623685
OJKN01000010
[OJKN] metagenome; surface
62939
63013
+
Glu
TTC
[ENA]
¢þ
>WENV182623686
OJKN01000010
[OJKN] metagenome; surface
63425
63499
+
Asp
GTC
[ENA]
¢þ
>WENV182623687
OJKN01000010
[OJKN] metagenome; surface
63560
63635
+
Phe
GAA
[ENA]
¢þ
>WENV182623663
OJKN01000002
[OJKN] metagenome; surface
65802
65875
+
Arg
CCT
[ENA]
¢þ
>WENV182623662
OJKN01000001
[OJKN] metagenome; surface
65852
65768
-
Leu
CAA
[ENA]
¢þ
>WENV182623683
OJKN01000008
[OJKN] metagenome; surface
66509
66584
+
Thr
CGT
[ENA]
¢þ
>WENV182623672
OJKN01000004
[OJKN] metagenome; surface
76609
76682
+
Gly
CCC
[ENA]
¢þ
>WENV182623674
OJKN01000005
[OJKN] metagenome; surface
103054
102967
-
Leu
GAG
[ENA]
¢þ
>WENV182623664
OJKN01000002
[OJKN] metagenome; surface
116818
116743
-
Thr
TGT
[ENA]
¢þ
>WENV182623659
OJKN01000001
[OJKN] metagenome; surface
139269
139342
+
Ala
GGC
[ENA]
¢þ
>WENV182623671
OJKN01000003
[OJKN] metagenome; surface
139607
139534
-
Val
CAC
[ENA]
¢þ
>WENV182623668
OJKN01000003
[OJKN] metagenome; surface
139986
140059
+
Gly
GCC
[ENA]
¢þ
>WENV182623669
OJKN01000003
[OJKN] metagenome; surface
140087
140158
+
Cys
GCA
[ENA]
¢þ
>WENV182623670
OJKN01000003
[OJKN] metagenome; surface
140159
140231
+
Val
GAC
[ENA]
¢þ
>WENV182623673
OJKN01000004
[OJKN] metagenome; surface
145085
145168
+
Leu
CAG
[ENA]
¢þ
>WENV182623660
OJKN01000001
[OJKN] metagenome; surface
248276
248349
+
Asn
GTT
[ENA]
¢þ
>WENV182623661
OJKN01000001
[OJKN] metagenome; surface
260779
260853
+
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK