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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJKX] metagenome; surface
HIT:
80 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182632869
OJKX01004980
[OJKX] metagenome; surface
24
97
+
Trp
CCA
[ENA]
¢þ
>WENV182632870
OJKX01004980
[OJKX] metagenome; surface
100
175
+
His
GTG
[ENA]
¢þ
>WENV182632868
OJKX01004599
[OJKX] metagenome; surface
103
188
+
Leu
CAG
[ENA]
¢þ
>WENV182632849
OJKX01000093
[OJKX] metagenome; surface
127
200
+
Asp
GTC
[ENA]
¢þ
>WENV182632859
OJKX01002644
[OJKX] metagenome; surface
133
206
+
Ala
TGC
[ENA]
¢þ
>WENV182632871
OJKX01004980
[OJKX] metagenome; surface
193
266
+
Gly
TCC
[ENA]
¢þ
>WENV182632861
OJKX01003235
[OJKX] metagenome; surface
193
268
+
Thr
TGT
[ENA]
¢þ
>WENV182632862
OJKX01003235
[OJKX] metagenome; surface
274
348
+
Lys
TTT
[ENA]
¢þ
>WENV182632872
OJKX01004980
[OJKX] metagenome; surface
276
350
+
Asn
GTT
[ENA]
¢þ
>WENV182632873
OJKX01004980
[OJKX] metagenome; surface
352
426
+
Glu
TTC
[ENA]
¢þ
>WENV182632863
OJKX01003235
[OJKX] metagenome; surface
366
437
+
Gly
GCC
[ENA]
¢þ
>WENV182632860
OJKX01002740
[OJKX] metagenome; surface
373
300
-
Ala
AGC
[ENA]
¢þ
>WENV182632867
OJKX01004492
[OJKX] metagenome; surface
382
309
-
Ala
GGC
[ENA]
¢þ
>WENV182632874
OJKX01004980
[OJKX] metagenome; surface
432
504
+
Asp
GTC
[ENA]
¢þ
>WENV182632866
OJKX01003912
[OJKX] metagenome; surface
435
511
+
fMet
CAT
[ENA]
¢þ
>WENV182632864
OJKX01003235
[OJKX] metagenome; surface
445
530
+
Leu
TAA
[ENA]
¢þ
>WENV182632865
OJKX01003235
[OJKX] metagenome; surface
549
622
+
Arg
ACG
[ENA]
¢þ
>WENV182632857
OJKX01001500
[OJKX] metagenome; surface
551
624
+
Gly
GCC
[ENA]
¢þ
>WENV182632856
OJKX01000836
[OJKX] metagenome; surface
600
691
+
Glu
CTC
[ENA]
¢þ
>WENV182632858
OJKX01002052
[OJKX] metagenome; surface
659
732
+
Ile
GAT
[ENA]
¢þ
>WENV182632855
OJKX01000762
[OJKX] metagenome; surface
869
779
-
Thr
TGT
[ENA]
¢þ
>WENV182632854
OJKX01000326
[OJKX] metagenome; surface
1074
1149
+
Thr
CGT
[ENA]
¢þ
>WENV182632853
OJKX01000207
[OJKX] metagenome; surface
1715
1639
-
Ala
TGC
[ENA]
¢þ
>WENV182632851
OJKX01000191
[OJKX] metagenome; surface
1721
1805
+
Leu
TAG
[ENA]
¢þ
>WENV182632852
OJKX01000207
[OJKX] metagenome; surface
1819
1743
-
Ile
GAT
[ENA]
¢þ
>WENV182632850
OJKX01000100
[OJKX] metagenome; surface
1886
1956
+
Met
CAT
[ENA]
¢þ
>WENV182632817
OJKX01000009
[OJKX] metagenome; surface
4005
4078
+
Gly
TCC
[ENA]
¢þ
>WENV182632847
OJKX01000030
[OJKX] metagenome; surface
4282
4199
-
Leu
TAG
[ENA]
¢þ
>WENV182632848
OJKX01000032
[OJKX] metagenome; surface
6944
7021
+
Leu
TAA
[ENA]
¢þ
>WENV182632805
OJKX01000004
[OJKX] metagenome; surface
8361
8443
+
Tyr
GTA
[ENA]
¢þ
>WENV182632806
OJKX01000004
[OJKX] metagenome; surface
8644
8717
+
Thr
GGT
[ENA]
¢þ
>WENV182632807
OJKX01000004
[OJKX] metagenome; surface
8782
8856
+
Met
CAT
[ENA]
¢þ
>WENV182632846
OJKX01000030
[OJKX] metagenome; surface
9217
9143
-
Lys
CTT
[ENA]
¢þ
>WENV182632808
OJKX01000004
[OJKX] metagenome; surface
12848
12921
+
Trp
CCA
[ENA]
¢þ
>WENV182632839
OJKX01000027
[OJKX] metagenome; surface
15015
15089
+
Asn
GTT
[ENA]
¢þ
>WENV182632825
OJKX01000014
[OJKX] metagenome; surface
17220
17303
+
Leu
CAG
[ENA]
¢þ
>WENV182632840
OJKX01000027
[OJKX] metagenome; surface
17922
17995
+
Thr
TGT
[ENA]
¢þ
>WENV182632845
OJKX01000027
[OJKX] metagenome; surface
18546
18471
-
Lys
TTT
[ENA]
¢þ
>WENV182632841
OJKX01000027
[OJKX] metagenome; surface
20905
20979
+
Ala
TGC
[ENA]
¢þ
>WENV182632842
OJKX01000027
[OJKX] metagenome; surface
21071
21153
+
Tyr
GTA
[ENA]
¢þ
>WENV182632843
OJKX01000027
[OJKX] metagenome; surface
21192
21276
+
Ser
TGA
[ENA]
¢þ
>WENV182632831
OJKX01000015
[OJKX] metagenome; surface
22704
22630
-
Ala
TGC
[ENA]
¢þ
>WENV182632844
OJKX01000027
[OJKX] metagenome; surface
23666
23736
+
Val
TAC
[ENA]
¢þ
>WENV182632816
OJKX01000008
[OJKX] metagenome; surface
26500
26427
-
Arg
CCT
[ENA]
¢þ
>WENV182632838
OJKX01000023
[OJKX] metagenome; surface
26941
26866
-
Phe
GAA
[ENA]
¢þ
>WENV182632837
OJKX01000023
[OJKX] metagenome; surface
27076
27002
-
Asp
GTC
[ENA]
¢þ
>WENV182632836
OJKX01000023
[OJKX] metagenome; surface
27562
27488
-
Glu
TTC
[ENA]
¢þ
>WENV182632835
OJKX01000023
[OJKX] metagenome; surface
29375
29449
+
Lys
TTT
[ENA]
¢þ
>WENV182632826
OJKX01000014
[OJKX] metagenome; surface
31597
31673
+
Pro
CGG
[ENA]
¢þ
>WENV182632832
OJKX01000019
[OJKX] metagenome; surface
32390
32462
+
Gln
CTG
[ENA]
¢þ
>WENV182632833
OJKX01000019
[OJKX] metagenome; surface
32598
32673
+
Glu
CTC
[ENA]
¢þ
>WENV182632812
OJKX01000008
[OJKX] metagenome; surface
34010
34083
+
Ala
CGC
[ENA]
¢þ
>WENV182632804
OJKX01000003
[OJKX] metagenome; surface
34912
34840
-
Val
GAC
[ENA]
¢þ
>WENV182632803
OJKX01000003
[OJKX] metagenome; surface
34984
34913
-
Cys
GCA
[ENA]
¢þ
>WENV182632802
OJKX01000003
[OJKX] metagenome; surface
35085
35012
-
Gly
GCC
[ENA]
¢þ
>WENV182632800
OJKX01000003
[OJKX] metagenome; surface
35464
35538
+
Val
CAC
[ENA]
¢þ
>WENV182632815
OJKX01000008
[OJKX] metagenome; surface
40677
40596
-
Tyr
GTA
[ENA]
¢þ
>WENV182632834
OJKX01000019
[OJKX] metagenome; surface
42267
42193
-
Val
TAC
[ENA]
¢þ
>WENV182632823
OJKX01000013
[OJKX] metagenome; surface
45341
45413
+
Arg
CCG
[ENA]
¢þ
>WENV182632822
OJKX01000012
[OJKX] metagenome; surface
46717
46642
-
Pro
TGG
[ENA]
¢þ
>WENV182632810
OJKX01000005
[OJKX] metagenome; surface
50499
50424
-
Thr
CGT
[ENA]
¢þ
>WENV182632830
OJKX01000014
[OJKX] metagenome; surface
59514
59427
-
Ser
CGA
[ENA]
¢þ
>WENV182632798
OJKX01000001
[OJKX] metagenome; surface
64820
64736
-
Leu
CAA
[ENA]
¢þ
>WENV182632824
OJKX01000013
[OJKX] metagenome; surface
66398
66474
+
fMet
CAT
[ENA]
¢þ
>WENV182632829
OJKX01000014
[OJKX] metagenome; surface
67768
67695
-
Arg
ACG
[ENA]
¢þ
>WENV182632828
OJKX01000014
[OJKX] metagenome; surface
68088
67998
-
Ser
GCT
[ENA]
¢þ
>WENV182632819
OJKX01000011
[OJKX] metagenome; surface
69178
69091
-
Leu
GAG
[ENA]
¢þ
>WENV182632818
OJKX01000010
[OJKX] metagenome; surface
72927
73002
+
Thr
TGT
[ENA]
¢þ
>WENV182632827
OJKX01000014
[OJKX] metagenome; surface
75419
75334
-
Ser
TGA
[ENA]
¢þ
>WENV182632811
OJKX01000007
[OJKX] metagenome; surface
77345
77418
+
Gly
CCC
[ENA]
¢þ
>WENV182632821
OJKX01000012
[OJKX] metagenome; surface
79343
79268
-
Arg
TCT
[ENA]
¢þ
>WENV182632820
OJKX01000012
[OJKX] metagenome; surface
81410
81485
+
His
GTG
[ENA]
¢þ
>WENV182632813
OJKX01000008
[OJKX] metagenome; surface
81428
81507
+
Gln
TTG
[ENA]
¢þ
>WENV182632814
OJKX01000008
[OJKX] metagenome; surface
100664
100738
+
Leu
TAA
[ENA]
¢þ
>WENV182632799
OJKX01000002
[OJKX] metagenome; surface
100951
100877
-
Ile
GAT
[ENA]
¢þ
>WENV182632809
OJKX01000005
[OJKX] metagenome; surface
102736
102821
+
Ser
GGA
[ENA]
¢þ
>WENV182632795
OJKX01000001
[OJKX] metagenome; surface
138227
138300
+
Ala
GGC
[ENA]
¢þ
>WENV182632801
OJKX01000003
[OJKX] metagenome; surface
186893
186967
+
Pro
GGG
[ENA]
¢þ
>WENV182632796
OJKX01000001
[OJKX] metagenome; surface
247312
247385
+
Asn
GTT
[ENA]
¢þ
>WENV182632797
OJKX01000001
[OJKX] metagenome; surface
259814
259888
+
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK