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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJLD] metagenome; surface
HIT:
87 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182640789
OJLD01002314
[OJLD] metagenome; surface
22
95
+
Arg
CCG
[ENA]
¢þ
>WENV182640724
OJLD01000082
[OJLD] metagenome; surface
112
40
-
Arg
CCG
[ENA]
¢þ
>WENV182640764
OJLD01001220
[OJLD] metagenome; surface
132
56
-
Pro
CGG
[ENA]
¢þ
>WENV182640786
OJLD01002243
[OJLD] metagenome; surface
138
212
+
Ile2
CAT
[ENA]
¢þ
>WENV182640765
OJLD01001301
[OJLD] metagenome; surface
146
74
-
Gln
TTG
[ENA]
¢þ
>WENV182640780
OJLD01001608
[OJLD] metagenome; surface
173
88
-
Tyr
GTA
[ENA]
¢þ
>WENV182640787
OJLD01002253
[OJLD] metagenome; surface
198
123
-
His
GTG
[ENA]
¢þ
>WENV182640772
OJLD01001462
[OJLD] metagenome; surface
201
283
+
Leu
TAG
[ENA]
¢þ
>WENV182640779
OJLD01001608
[OJLD] metagenome; surface
285
210
-
Thr
TGT
[ENA]
¢þ
>WENV182640788
OJLD01002305
[OJLD] metagenome; surface
294
219
-
Lys
CTT
[ENA]
¢þ
>WENV182640768
OJLD01001346
[OJLD] metagenome; surface
314
239
-
Arg
TCT
[ENA]
¢þ
>WENV182640798
OJLD01003596
[OJLD] metagenome; surface
356
430
+
Asn
GTT
[ENA]
¢þ
>WENV182640763
OJLD01001017
[OJLD] metagenome; surface
383
456
+
Asn
GTT
[ENA]
¢þ
>WENV182640797
OJLD01003516
[OJLD] metagenome; surface
385
458
+
Arg
ACG
[ENA]
¢þ
>WENV182640778
OJLD01001608
[OJLD] metagenome; surface
388
312
-
Asp
GTC
[ENA]
¢þ
>WENV182640785
OJLD01002048
[OJLD] metagenome; surface
435
362
-
Thr
TGT
[ENA]
¢þ
>WENV182640794
OJLD01002700
[OJLD] metagenome; surface
439
512
+
Glu
CTC
[ENA]
¢þ
>WENV182640795
OJLD01002727
[OJLD] metagenome; surface
465
536
+
Arg
CCG
[ENA]
¢þ
>WENV182640796
OJLD01003455
[OJLD] metagenome; surface
504
581
+
Leu
TAA
[ENA]
¢þ
>WENV182640791
OJLD01002394
[OJLD] metagenome; surface
525
441
-
Ser
TGA
[ENA]
¢þ
>WENV182640777
OJLD01001608
[OJLD] metagenome; surface
548
473
-
Val
TAC
[ENA]
¢þ
>WENV182640782
OJLD01001742
[OJLD] metagenome; surface
548
474
-
Pro
GGG
[ENA]
¢þ
>WENV182640732
OJLD01000158
[OJLD] metagenome; surface
648
723
+
Lys
CTT
[ENA]
¢þ
>WENV182640762
OJLD01000865
[OJLD] metagenome; surface
701
615
-
Leu
CAA
[ENA]
¢þ
>WENV182640776
OJLD01001608
[OJLD] metagenome; surface
713
639
-
Glu
TTC
[ENA]
¢þ
>WENV182640790
OJLD01002367
[OJLD] metagenome; surface
761
686
-
Thr
GGT
[ENA]
¢þ
>WENV182640784
OJLD01001942
[OJLD] metagenome; surface
769
859
+
Ser
GGA
[ENA]
¢þ
>WENV182640793
OJLD01002446
[OJLD] metagenome; surface
782
697
-
Leu
TAG
[ENA]
¢þ
>WENV182640766
OJLD01001312
[OJLD] metagenome; surface
809
883
+
Pro
TGG
[ENA]
¢þ
>WENV182640792
OJLD01002446
[OJLD] metagenome; surface
860
784
-
His
GTG
[ENA]
¢þ
>WENV182640771
OJLD01001355
[OJLD] metagenome; surface
867
794
-
Trp
CCA
[ENA]
¢þ
>WENV182640726
OJLD01000102
[OJLD] metagenome; surface
927
1021
+
SeC
TCA
[ENA]
¢þ
>WENV182640783
OJLD01001881
[OJLD] metagenome; surface
960
886
-
Gly
TCC
[ENA]
¢þ
>WENV182640775
OJLD01001608
[OJLD] metagenome; surface
992
918
-
Glu
CTC
[ENA]
¢þ
>WENV182640770
OJLD01001355
[OJLD] metagenome; surface
1079
1006
-
Met
CAT
[ENA]
¢þ
>WENV182640781
OJLD01001698
[OJLD] metagenome; surface
1111
1035
-
Pro
CGG
[ENA]
¢þ
>WENV182640774
OJLD01001608
[OJLD] metagenome; surface
1127
1051
-
Met
CAT
[ENA]
¢þ
>WENV182640769
OJLD01001355
[OJLD] metagenome; surface
1193
1118
-
Thr
GGT
[ENA]
¢þ
>WENV182640773
OJLD01001608
[OJLD] metagenome; surface
1284
1208
-
fMet
CAT
[ENA]
¢þ
>WENV182640757
OJLD01000709
[OJLD] metagenome; surface
1412
1485
+
Lys
TTT
[ENA]
¢þ
>WENV182640767
OJLD01001329
[OJLD] metagenome; surface
1503
1589
+
Leu
GAG
[ENA]
¢þ
>WENV182640761
OJLD01000858
[OJLD] metagenome; surface
1657
1569
-
Ser
GGA
[ENA]
¢þ
>WENV182640755
OJLD01000497
[OJLD] metagenome; surface
1840
1764
-
Arg
CCT
[ENA]
¢þ
>WENV182640758
OJLD01000709
[OJLD] metagenome; surface
1931
2006
+
Glu
TTC
[ENA]
¢þ
>WENV182640759
OJLD01000709
[OJLD] metagenome; surface
2042
2116
+
Asp
GTC
[ENA]
¢þ
>WENV182640760
OJLD01000709
[OJLD] metagenome; surface
2135
2208
+
Phe
GAA
[ENA]
¢þ
>WENV182640744
OJLD01000292
[OJLD] metagenome; surface
2505
2581
+
Leu
TAA
[ENA]
¢þ
>WENV182640754
OJLD01000406
[OJLD] metagenome; surface
2558
2482
-
Ile
GAT
[ENA]
¢þ
>WENV182640731
OJLD01000153
[OJLD] metagenome; surface
2667
2741
+
Arg
CCT
[ENA]
¢þ
>WENV182640753
OJLD01000406
[OJLD] metagenome; surface
2685
2610
-
Trp
CCA
[ENA]
¢þ
>WENV182640752
OJLD01000406
[OJLD] metagenome; surface
2811
2736
-
Phe
GAA
[ENA]
¢þ
>WENV182640756
OJLD01000645
[OJLD] metagenome; surface
2860
2787
-
Ala
TGC
[ENA]
¢þ
>WENV182640751
OJLD01000406
[OJLD] metagenome; surface
2920
2827
-
Ser
GCT
[ENA]
¢þ
>WENV182640750
OJLD01000406
[OJLD] metagenome; surface
3071
2982
-
Ser
TGA
[ENA]
¢þ
>WENV182640749
OJLD01000406
[OJLD] metagenome; surface
3291
3216
-
Lys
TTT
[ENA]
¢þ
>WENV182640748
OJLD01000406
[OJLD] metagenome; surface
3370
3295
-
Gln
TTG
[ENA]
¢þ
>WENV182640743
OJLD01000283
[OJLD] metagenome; surface
3523
3450
-
Gly
CCC
[ENA]
¢þ
>WENV182640747
OJLD01000406
[OJLD] metagenome; surface
3531
3455
-
Arg
TCT
[ENA]
¢þ
>WENV182640746
OJLD01000406
[OJLD] metagenome; surface
3606
3533
-
Gly
TCC
[ENA]
¢þ
>WENV182640745
OJLD01000406
[OJLD] metagenome; surface
3736
3662
-
Gly
GCC
[ENA]
¢þ
>WENV182640742
OJLD01000263
[OJLD] metagenome; surface
4056
3981
-
Ala
TGC
[ENA]
¢þ
>WENV182640741
OJLD01000263
[OJLD] metagenome; surface
4145
4071
-
Pro
TGG
[ENA]
¢þ
>WENV182640740
OJLD01000263
[OJLD] metagenome; surface
4252
4179
-
Arg
ACG
[ENA]
¢þ
>WENV182640739
OJLD01000263
[OJLD] metagenome; surface
4352
4264
-
Leu
TAA
[ENA]
¢þ
>WENV182640738
OJLD01000263
[OJLD] metagenome; surface
4443
4369
-
Gly
GCC
[ENA]
¢þ
>WENV182640737
OJLD01000263
[OJLD] metagenome; surface
4528
4447
-
Leu
TAG
[ENA]
¢þ
>WENV182640736
OJLD01000263
[OJLD] metagenome; surface
4610
4537
-
Lys
TTT
[ENA]
¢þ
>WENV182640735
OJLD01000263
[OJLD] metagenome; surface
4691
4616
-
Thr
TGT
[ENA]
¢þ
>WENV182640733
OJLD01000195
[OJLD] metagenome; surface
4701
4789
+
Ser
GCT
[ENA]
¢þ
>WENV182640734
OJLD01000263
[OJLD] metagenome; surface
4787
4712
-
Val
TAC
[ENA]
¢þ
>WENV182640728
OJLD01000140
[OJLD] metagenome; surface
4801
4874
+
Val
TAC
[ENA]
¢þ
>WENV182640730
OJLD01000151
[OJLD] metagenome; surface
4862
4938
+
fMet
CAT
[ENA]
¢þ
>WENV182640727
OJLD01000127
[OJLD] metagenome; surface
4961
5036
+
Thr
CGT
[ENA]
¢þ
>WENV182640729
OJLD01000150
[OJLD] metagenome; surface
6143
6055
-
Ser
CGA
[ENA]
¢þ
>WENV182640725
OJLD01000091
[OJLD] metagenome; surface
7324
7251
-
Ala
GGC
[ENA]
¢þ
>WENV182640723
OJLD01000077
[OJLD] metagenome; surface
7426
7352
-
Arg
TCT
[ENA]
¢þ
>WENV182640715
OJLD01000048
[OJLD] metagenome; surface
8372
8464
+
Ser
TGA
[ENA]
¢þ
>WENV182640712
OJLD01000024
[OJLD] metagenome; surface
8408
8490
+
Tyr
GTA
[ENA]
¢þ
>WENV182640716
OJLD01000048
[OJLD] metagenome; surface
8475
8550
+
fMet
CAT
[ENA]
¢þ
>WENV182640717
OJLD01000048
[OJLD] metagenome; surface
8561
8636
+
Asp
GTC
[ENA]
¢þ
>WENV182640718
OJLD01000048
[OJLD] metagenome; surface
8647
8721
+
Phe
GAA
[ENA]
¢þ
>WENV182640719
OJLD01000048
[OJLD] metagenome; surface
8734
8809
+
His
GTG
[ENA]
¢þ
>WENV182640720
OJLD01000048
[OJLD] metagenome; surface
8824
8897
+
Gly
TCC
[ENA]
¢þ
>WENV182640721
OJLD01000048
[OJLD] metagenome; surface
8907
8981
+
Asn
GTT
[ENA]
¢þ
>WENV182640722
OJLD01000048
[OJLD] metagenome; surface
8984
9074
+
Ser
GCT
[ENA]
¢þ
>WENV182640713
OJLD01000040
[OJLD] metagenome; surface
9852
9923
+
Glu
TTC
[ENA]
¢þ
>WENV182640714
OJLD01000040
[OJLD] metagenome; surface
9976
10066
+
Ser
GGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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