This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJLN] metagenome; surface
HIT:
121 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182642548
OJLN01001948
[OJLN] metagenome; surface
76
150
+
Arg
TCT
[ENA]
¢þ
>WENV182642553
OJLN01002889
[OJLN] metagenome; surface
91
165
+
Met
CAT
[ENA]
¢þ
>WENV182642572
OJLN01007803
[OJLN] metagenome; surface
129
220
+
Pro
AGG
[ENA]
¢þ
>WENV182642573
OJLN01007911
[OJLN] metagenome; surface
131
220
+
Ser
TGA
[ENA]
¢þ
>WENV182642566
OJLN01006209
[OJLN] metagenome; surface
132
203
+
Asp
GTC
[ENA]
¢þ
>WENV182642587
OJLN01014302
[OJLN] metagenome; surface
152
79
-
Glu
CTC
[ENA]
¢þ
>WENV182642580
OJLN01012095
[OJLN] metagenome; surface
157
229
+
Trp
CCA
[ENA]
¢þ
>WENV182642561
OJLN01004960
[OJLN] metagenome; surface
170
244
+
Ile
GAT
[ENA]
¢þ
>WENV182642554
OJLN01002889
[OJLN] metagenome; surface
192
265
+
Ile2
CAT
[ENA]
¢þ
>WENV182642558
OJLN01004360
[OJLN] metagenome; surface
204
128
-
Arg
ACG
[ENA]
¢þ
>WENV182642563
OJLN01005117
[OJLN] metagenome; surface
205
130
-
Lys
CTT
[ENA]
¢þ
>WENV182642571
OJLN01007608
[OJLN] metagenome; surface
205
281
+
Pro
GGG
[ENA]
¢þ
>WENV182642574
OJLN01007911
[OJLN] metagenome; surface
235
308
+
fMet
CAT
[ENA]
¢þ
>WENV182642546
OJLN01001881
[OJLN] metagenome; surface
237
308
+
Glu
TTC
[ENA]
¢þ
>WENV182642581
OJLN01012095
[OJLN] metagenome; surface
242
316
+
His
GTG
[ENA]
¢þ
>WENV182642559
OJLN01004577
[OJLN] metagenome; surface
243
327
+
Leu
TAG
[ENA]
¢þ
>WENV182642586
OJLN01014302
[OJLN] metagenome; surface
244
172
-
Gln
CTG
[ENA]
¢þ
>WENV182642579
OJLN01010355
[OJLN] metagenome; surface
249
175
-
Arg
ACG
[ENA]
¢þ
>WENV182642555
OJLN01002889
[OJLN] metagenome; surface
275
367
+
Ser
TGA
[ENA]
¢þ
>WENV182642575
OJLN01007911
[OJLN] metagenome; surface
313
387
+
Phe
GAA
[ENA]
¢þ
>WENV182642582
OJLN01012095
[OJLN] metagenome; surface
328
401
+
Gln
TTG
[ENA]
¢þ
>WENV182642531
OJLN01000091
[OJLN] metagenome; surface
330
240
-
Ser
GGA
[ENA]
¢þ
>WENV182642557
OJLN01004360
[OJLN] metagenome; surface
334
258
-
Arg
ACG
[ENA]
¢þ
>WENV182642518
OJLN01000081
[OJLN] metagenome; surface
341
266
-
Lys
TTT
[ENA]
¢þ
>WENV182642585
OJLN01013877
[OJLN] metagenome; surface
350
261
-
Ser
GCT
[ENA]
¢þ
>WENV182642584
OJLN01013342
[OJLN] metagenome; surface
361
442
+
Ser
GCT
[ENA]
¢þ
>WENV182642547
OJLN01001914
[OJLN] metagenome; surface
373
449
+
Pro
CGG
[ENA]
¢þ
>WENV182642565
OJLN01006013
[OJLN] metagenome; surface
382
458
+
Leu
TAA
[ENA]
¢þ
>WENV182642576
OJLN01007911
[OJLN] metagenome; surface
403
475
+
Gly
TCC
[ENA]
¢þ
>WENV182642583
OJLN01012095
[OJLN] metagenome; surface
409
494
+
Leu
CAA
[ENA]
¢þ
>WENV182642551
OJLN01002519
[OJLN] metagenome; surface
428
502
+
Asn
GTT
[ENA]
¢þ
>WENV182642550
OJLN01002485
[OJLN] metagenome; surface
439
518
+
Ala
AGC
[ENA]
¢þ
>WENV182642513
OJLN01000081
[OJLN] metagenome; surface
449
520
+
Gly
TCC
[ENA]
¢þ
>WENV182642530
OJLN01000091
[OJLN] metagenome; surface
455
382
-
Glu
TTC
[ENA]
¢þ
>WENV182642532
OJLN01000103
[OJLN] metagenome; surface
477
567
+
Ser
GCT
[ENA]
¢þ
>WENV182642552
OJLN01002809
[OJLN] metagenome; surface
485
567
+
Leu
CAG
[ENA]
¢þ
>WENV182642567
OJLN01006857
[OJLN] metagenome; surface
488
561
+
Glu
TTC
[ENA]
¢þ
>WENV182642556
OJLN01003902
[OJLN] metagenome; surface
489
562
+
Asn
GTT
[ENA]
¢þ
>WENV182642562
OJLN01004960
[OJLN] metagenome; surface
506
581
+
Ala
TGC
[ENA]
¢þ
>WENV182642577
OJLN01007911
[OJLN] metagenome; surface
509
585
+
Ile
GAT
[ENA]
¢þ
>WENV182642564
OJLN01005886
[OJLN] metagenome; surface
511
438
-
Asn
GTT
[ENA]
¢þ
>WENV182642560
OJLN01004577
[OJLN] metagenome; surface
515
590
+
Arg
TCG
[ENA]
¢þ
>WENV182642529
OJLN01000091
[OJLN] metagenome; surface
530
456
-
Asn
GTT
[ENA]
¢þ
>WENV182642568
OJLN01006924
[OJLN] metagenome; surface
543
615
+
Ala
AGC
[ENA]
¢þ
>WENV182642569
OJLN01007368
[OJLN] metagenome; surface
549
620
+
Val
GAC
[ENA]
¢þ
>WENV182642570
OJLN01007504
[OJLN] metagenome; surface
562
479
-
Val
TAC
[ENA]
¢þ
>WENV182642578
OJLN01008888
[OJLN] metagenome; surface
565
476
-
Ser
TGA
[ENA]
¢þ
>WENV182642549
OJLN01002316
[OJLN] metagenome; surface
775
702
-
Asn
GTT
[ENA]
¢þ
>WENV182642533
OJLN01000103
[OJLN] metagenome; surface
797
870
+
Arg
ACG
[ENA]
¢þ
>WENV182642545
OJLN01001209
[OJLN] metagenome; surface
1091
1018
-
Cys
GCA
[ENA]
¢þ
>WENV182642544
OJLN01000585
[OJLN] metagenome; surface
1259
1332
+
Gly
GCC
[ENA]
¢þ
>WENV182642543
OJLN01000496
[OJLN] metagenome; surface
1364
1447
+
Gly
GCC
[ENA]
¢þ
>WENV182642534
OJLN01000120
[OJLN] metagenome; surface
1764
1834
+
Met
CAT
[ENA]
¢þ
>WENV182642542
OJLN01000378
[OJLN] metagenome; surface
1825
1739
-
Ser
GGA
[ENA]
¢þ
>WENV182642541
OJLN01000352
[OJLN] metagenome; surface
1938
1863
-
Arg
TCG
[ENA]
¢þ
>WENV182642540
OJLN01000352
[OJLN] metagenome; surface
2099
2016
-
Leu
TAG
[ENA]
¢þ
>WENV182642511
OJLN01000080
[OJLN] metagenome; surface
2156
2232
+
Ile
GAT
[ENA]
¢þ
>WENV182642539
OJLN01000335
[OJLN] metagenome; surface
2164
2089
-
Ala
TGC
[ENA]
¢þ
>WENV182642512
OJLN01000080
[OJLN] metagenome; surface
2288
2363
+
Ala
TGC
[ENA]
¢þ
>WENV182642514
OJLN01000081
[OJLN] metagenome; surface
2697
2771
+
Ala
TGC
[ENA]
¢þ
>WENV182642515
OJLN01000081
[OJLN] metagenome; surface
2863
2945
+
Tyr
GTA
[ENA]
¢þ
>WENV182642538
OJLN01000143
[OJLN] metagenome; surface
2901
2830
-
Glu
CTC
[ENA]
¢þ
>WENV182642516
OJLN01000081
[OJLN] metagenome; surface
2983
3067
+
Ser
TGA
[ENA]
¢þ
>WENV182642507
OJLN01000062
[OJLN] metagenome; surface
3030
3115
+
Ser
GGA
[ENA]
¢þ
>WENV182642506
OJLN01000055
[OJLN] metagenome; surface
3109
3026
-
Leu
TAG
[ENA]
¢þ
>WENV182642535
OJLN01000120
[OJLN] metagenome; surface
3177
3259
+
Leu
TAG
[ENA]
¢þ
>WENV182642537
OJLN01000143
[OJLN] metagenome; surface
3259
3188
-
Gly
TCC
[ENA]
¢þ
>WENV182642536
OJLN01000120
[OJLN] metagenome; surface
3391
3465
+
Arg
TCG
[ENA]
¢þ
>WENV182642528
OJLN01000091
[OJLN] metagenome; surface
3825
3753
-
Ala
TGC
[ENA]
¢þ
>WENV182642527
OJLN01000091
[OJLN] metagenome; surface
3914
3840
-
Pro
TGG
[ENA]
¢þ
>WENV182642526
OJLN01000091
[OJLN] metagenome; surface
4014
3938
-
Arg
ACG
[ENA]
¢þ
>WENV182642525
OJLN01000091
[OJLN] metagenome; surface
4114
4026
-
Leu
TAA
[ENA]
¢þ
>WENV182642524
OJLN01000091
[OJLN] metagenome; surface
4196
4122
-
Gly
GCC
[ENA]
¢þ
>WENV182642523
OJLN01000091
[OJLN] metagenome; surface
4296
4224
-
Thr
TGT
[ENA]
¢þ
>WENV182642522
OJLN01000091
[OJLN] metagenome; surface
4394
4313
-
Leu
TAG
[ENA]
¢þ
>WENV182642521
OJLN01000091
[OJLN] metagenome; surface
4472
4400
-
Lys
TTT
[ENA]
¢þ
>WENV182642520
OJLN01000091
[OJLN] metagenome; surface
4577
4505
-
Asp
GTC
[ENA]
¢þ
>WENV182642519
OJLN01000091
[OJLN] metagenome; surface
4652
4580
-
Val
TAC
[ENA]
¢þ
>WENV182642510
OJLN01000072
[OJLN] metagenome; surface
4773
4860
+
Ser
CGA
[ENA]
¢þ
>WENV182642517
OJLN01000081
[OJLN] metagenome; surface
5778
5848
+
Val
TAC
[ENA]
¢þ
>WENV182642502
OJLN01000036
[OJLN] metagenome; surface
6568
6493
-
His
GTG
[ENA]
¢þ
>WENV182642509
OJLN01000070
[OJLN] metagenome; surface
6805
6882
+
Leu
TAA
[ENA]
¢þ
>WENV182642508
OJLN01000063
[OJLN] metagenome; surface
7132
7206
+
Pro
GGG
[ENA]
¢þ
>WENV182642471
OJLN01000001
[OJLN] metagenome; surface
7229
7155
-
Leu
TAA
[ENA]
¢þ
>WENV182642505
OJLN01000055
[OJLN] metagenome; surface
8046
7972
-
Lys
CTT
[ENA]
¢þ
>WENV182642503
OJLN01000047
[OJLN] metagenome; surface
8200
8276
+
fMet
CAT
[ENA]
¢þ
>WENV182642495
OJLN01000032
[OJLN] metagenome; surface
8416
8498
+
Tyr
GTA
[ENA]
¢þ
>WENV182642501
OJLN01000036
[OJLN] metagenome; surface
8635
8710
+
Arg
TCT
[ENA]
¢þ
>WENV182642496
OJLN01000032
[OJLN] metagenome; surface
8699
8772
+
Thr
GGT
[ENA]
¢þ
>WENV182642497
OJLN01000032
[OJLN] metagenome; surface
8837
8911
+
Met
CAT
[ENA]
¢þ
>WENV182642504
OJLN01000051
[OJLN] metagenome; surface
12658
12741
+
Leu
CAG
[ENA]
¢þ
>WENV182642498
OJLN01000032
[OJLN] metagenome; surface
12903
12976
+
Trp
CCA
[ENA]
¢þ
>WENV182642490
OJLN01000019
[OJLN] metagenome; surface
13651
13735
+
Leu
CAA
[ENA]
¢þ
>WENV182642494
OJLN01000023
[OJLN] metagenome; surface
13945
14021
+
Pro
CGG
[ENA]
¢þ
>WENV182642489
OJLN01000017
[OJLN] metagenome; surface
18365
18291
-
Lys
TTT
[ENA]
¢þ
>WENV182642486
OJLN01000017
[OJLN] metagenome; surface
20178
20252
+
Glu
TTC
[ENA]
¢þ
>WENV182642487
OJLN01000017
[OJLN] metagenome; surface
20664
20738
+
Asp
GTC
[ENA]
¢þ
>WENV182642488
OJLN01000017
[OJLN] metagenome; surface
20799
20874
+
Phe
GAA
[ENA]
¢þ
>WENV182642476
OJLN01000004
[OJLN] metagenome; surface
22082
22009
-
Gly
CCC
[ENA]
¢þ
>WENV182642500
OJLN01000035
[OJLN] metagenome; surface
22184
22097
-
Leu
GAG
[ENA]
¢þ
>WENV182642499
OJLN01000034
[OJLN] metagenome; surface
23973
24048
+
Ala
TGC
[ENA]
¢þ
>WENV182642484
OJLN01000014
[OJLN] metagenome; surface
25501
25575
+
Ile
GAT
[ENA]
¢þ
>WENV182642470
OJLN01000001
[OJLN] metagenome; surface
26465
26386
-
Gln
TTG
[ENA]
¢þ
>WENV182642491
OJLN01000021
[OJLN] metagenome; surface
32176
32248
+
Gln
CTG
[ENA]
¢þ
>WENV182642492
OJLN01000021
[OJLN] metagenome; surface
32384
32459
+
Glu
CTC
[ENA]
¢þ
>WENV182642493
OJLN01000021
[OJLN] metagenome; surface
41868
41794
-
Val
TAC
[ENA]
¢þ
>WENV182642483
OJLN01000012
[OJLN] metagenome; surface
42486
42558
+
Arg
CCG
[ENA]
¢þ
>WENV182642482
OJLN01000011
[OJLN] metagenome; surface
42786
42711
-
Thr
CGT
[ENA]
¢þ
>WENV182642485
OJLN01000016
[OJLN] metagenome; surface
45392
45477
+
Ser
TGA
[ENA]
¢þ
>WENV182642480
OJLN01000007
[OJLN] metagenome; surface
53657
53585
-
Val
GAC
[ENA]
¢þ
>WENV182642479
OJLN01000007
[OJLN] metagenome; surface
53729
53658
-
Cys
GCA
[ENA]
¢þ
>WENV182642478
OJLN01000007
[OJLN] metagenome; surface
53830
53757
-
Gly
GCC
[ENA]
¢þ
>WENV182642477
OJLN01000007
[OJLN] metagenome; surface
54209
54282
+
Val
CAC
[ENA]
¢þ
>WENV182642473
OJLN01000002
[OJLN] metagenome; surface
58035
57961
-
Ile2
CAT
[ENA]
¢þ
>WENV182642481
OJLN01000008
[OJLN] metagenome; surface
59760
59833
+
Ala
GGC
[ENA]
¢þ
>WENV182642469
OJLN01000001
[OJLN] metagenome; surface
62511
62438
-
Ala
CGC
[ENA]
¢þ
>WENV182642467
OJLN01000001
[OJLN] metagenome; surface
70034
70107
+
Arg
CCT
[ENA]
¢þ
>WENV182642472
OJLN01000002
[OJLN] metagenome; surface
70538
70465
-
Asn
GTT
[ENA]
¢þ
>WENV182642475
OJLN01000003
[OJLN] metagenome; surface
81700
81627
-
Gly
TCC
[ENA]
¢þ
>WENV182642474
OJLN01000003
[OJLN] metagenome; surface
100846
100771
-
Pro
TGG
[ENA]
¢þ
>WENV182642468
OJLN01000001
[OJLN] metagenome; surface
121049
120974
-
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK