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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJLQ] metagenome; surface
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182642891
OJLQ01003325
[OJLQ] metagenome; surface
82
6
-
Asp
GTC
[ENA]
¢þ
>WENV182642886
OJLQ01003227
[OJLQ] metagenome; surface
232
306
+
Arg
ACG
[ENA]
¢þ
>WENV182642890
OJLQ01003325
[OJLQ] metagenome; surface
265
173
-
Ser
TGA
[ENA]
¢þ
>WENV182642889
OJLQ01003325
[OJLQ] metagenome; surface
378
303
-
Asp
GTC
[ENA]
¢þ
>WENV182642888
OJLQ01003325
[OJLQ] metagenome; surface
458
384
-
Glu
TTC
[ENA]
¢þ
>WENV182642887
OJLQ01003325
[OJLQ] metagenome; surface
534
460
-
Asn
GTT
[ENA]
¢þ
>WENV182642882
OJLQ01000028
[OJLQ] metagenome; surface
702
630
-
Asn
GTT
[ENA]
¢þ
>WENV182642881
OJLQ01000028
[OJLQ] metagenome; surface
777
705
-
Arg
TCT
[ENA]
¢þ
>WENV182642885
OJLQ01000949
[OJLQ] metagenome; surface
798
726
-
Cys
GCA
[ENA]
¢þ
>WENV182642883
OJLQ01000071
[OJLQ] metagenome; surface
1252
1325
+
Glu
TTC
[ENA]
¢þ
>WENV182642884
OJLQ01000071
[OJLQ] metagenome; surface
1326
1397
+
Val
TAC
[ENA]
¢þ
>WENV182642880
OJLQ01000028
[OJLQ] metagenome; surface
2684
2613
-
His
GTG
[ENA]
¢þ
>WENV182642874
OJLQ01000004
[OJLQ] metagenome; surface
3089
3016
-
Lys
TTT
[ENA]
¢þ
>WENV182642879
OJLQ01000028
[OJLQ] metagenome; surface
3196
3124
-
Phe
GAA
[ENA]
¢þ
>WENV182642878
OJLQ01000028
[OJLQ] metagenome; surface
3277
3204
-
Ala
TGC
[ENA]
¢þ
>WENV182642877
OJLQ01000028
[OJLQ] metagenome; surface
3360
3280
-
Sup
TTA
[ENA]
¢þ
>WENV182642876
OJLQ01000028
[OJLQ] metagenome; surface
3433
3360
-
Ile2
CAT
[ENA]
¢þ
>WENV182642875
OJLQ01000028
[OJLQ] metagenome; surface
3506
3436
-
Met
CAT
[ENA]
¢þ
>WENV182642873
OJLQ01000004
[OJLQ] metagenome; surface
4922
4836
-
Tyr
GTA
[ENA]
¢þ
>WENV182642872
OJLQ01000001
[OJLQ] metagenome; surface
10517
10440
-
Leu
TAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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