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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJLR] metagenome; surface
HIT:
67 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182642937
OJLR01000141
[OJLR] metagenome; surface
46
117
+
Gly
TCC
[ENA]
¢þ
>WENV182642949
OJLR01051047
[OJLR] metagenome; surface
91
165
+
Cys
GCA
[ENA]
¢þ
>WENV182642954
OJLR01099090
[OJLR] metagenome; surface
119
193
+
Val
CAC
[ENA]
¢þ
>WENV182642947
OJLR01045673
[OJLR] metagenome; surface
221
148
-
Cys
GCA
[ENA]
¢þ
>WENV182642943
OJLR01002595
[OJLR] metagenome; surface
239
313
+
Asn
GTT
[ENA]
¢þ
>WENV182642956
OJLR01131110
[OJLR] metagenome; surface
275
347
+
Lys
TTT
[ENA]
¢þ
>WENV182642957
OJLR01147581
[OJLR] metagenome; surface
288
362
+
Lys
CTT
[ENA]
¢þ
>WENV182642955
OJLR01130339
[OJLR] metagenome; surface
340
269
-
Ala
CGC
[ENA]
¢þ
>WENV182642958
OJLR01191458
[OJLR] metagenome; surface
358
433
+
Trp
CCA
[ENA]
¢þ
>WENV182642945
OJLR01035594
[OJLR] metagenome; surface
378
451
+
Cys
GCA
[ENA]
¢þ
>WENV182642938
OJLR01000141
[OJLR] metagenome; surface
404
475
+
Glu
CTC
[ENA]
¢þ
>WENV182642948
OJLR01048573
[OJLR] metagenome; surface
420
347
-
Gln
CTG
[ENA]
¢þ
>WENV182642952
OJLR01059532
[OJLR] metagenome; surface
473
402
-
Ala
AGC
[ENA]
¢þ
>WENV182642953
OJLR01068372
[OJLR] metagenome; surface
557
486
-
Asp
GTC
[ENA]
¢þ
>WENV182642950
OJLR01056306
[OJLR] metagenome; surface
570
642
+
Lys
CTT
[ENA]
¢þ
>WENV182642951
OJLR01058635
[OJLR] metagenome; surface
692
619
-
Gln
CTG
[ENA]
¢þ
>WENV182642921
OJLR01000033
[OJLR] metagenome; surface
704
623
-
Tyr
GTA
[ENA]
¢þ
>WENV182642946
OJLR01037398
[OJLR] metagenome; surface
766
695
-
Cys
GCA
[ENA]
¢þ
>WENV182642940
OJLR01000145
[OJLR] metagenome; surface
950
877
-
Ala
GGC
[ENA]
¢þ
>WENV182642944
OJLR01004461
[OJLR] metagenome; surface
1096
1168
+
Met
CAT
[ENA]
¢þ
>WENV182642925
OJLR01000046
[OJLR] metagenome; surface
1489
1563
+
Glu
TTC
[ENA]
¢þ
>WENV182642926
OJLR01000046
[OJLR] metagenome; surface
1975
2049
+
Asp
GTC
[ENA]
¢þ
>WENV182642927
OJLR01000046
[OJLR] metagenome; surface
2110
2185
+
Phe
GAA
[ENA]
¢þ
>WENV182642919
OJLR01000031
[OJLR] metagenome; surface
2136
2051
-
Ser
GGA
[ENA]
¢þ
>WENV182642923
OJLR01000037
[OJLR] metagenome; surface
2422
2496
+
Ala
TGC
[ENA]
¢þ
>WENV182642942
OJLR01000224
[OJLR] metagenome; surface
3001
2927
-
Leu
TAA
[ENA]
¢þ
>WENV182642941
OJLR01000223
[OJLR] metagenome; surface
3744
3815
+
Glu
TTC
[ENA]
¢þ
>WENV182642934
OJLR01000064
[OJLR] metagenome; surface
3886
3812
-
Met
CAT
[ENA]
¢þ
>WENV182642933
OJLR01000064
[OJLR] metagenome; surface
4024
3951
-
Thr
GGT
[ENA]
¢þ
>WENV182642929
OJLR01000049
[OJLR] metagenome; surface
4280
4197
-
Leu
TAG
[ENA]
¢þ
>WENV182642932
OJLR01000064
[OJLR] metagenome; surface
4307
4225
-
Tyr
GTA
[ENA]
¢þ
>WENV182642939
OJLR01000141
[OJLR] metagenome; surface
4393
4320
-
Gly
GCC
[ENA]
¢þ
>WENV182642920
OJLR01000032
[OJLR] metagenome; surface
5020
4945
-
Thr
TGT
[ENA]
¢þ
>WENV182642907
OJLR01000014
[OJLR] metagenome; surface
6745
6670
-
His
GTG
[ENA]
¢þ
>WENV182642924
OJLR01000040
[OJLR] metagenome; surface
7305
7378
+
Gly
TCC
[ENA]
¢þ
>WENV182642918
OJLR01000029
[OJLR] metagenome; surface
8710
8786
+
fMet
CAT
[ENA]
¢þ
>WENV182642935
OJLR01000065
[OJLR] metagenome; surface
8797
8884
+
Leu
GAG
[ENA]
¢þ
>WENV182642905
OJLR01000014
[OJLR] metagenome; surface
8812
8887
+
Arg
TCT
[ENA]
¢þ
>WENV182642928
OJLR01000049
[OJLR] metagenome; surface
9215
9141
-
Lys
CTT
[ENA]
¢þ
>WENV182642936
OJLR01000072
[OJLR] metagenome; surface
10290
10373
+
Leu
CAG
[ENA]
¢þ
>WENV182642931
OJLR01000058
[OJLR] metagenome; surface
13508
13435
-
Trp
CCA
[ENA]
¢þ
>WENV182642922
OJLR01000034
[OJLR] metagenome; surface
13583
13655
+
Arg
CCG
[ENA]
¢þ
>WENV182642930
OJLR01000051
[OJLR] metagenome; surface
14445
14368
-
Leu
TAA
[ENA]
¢þ
>WENV182642913
OJLR01000027
[OJLR] metagenome; surface
16368
16453
+
Ser
TGA
[ENA]
¢þ
>WENV182642917
OJLR01000028
[OJLR] metagenome; surface
17701
17622
-
Gln
TTG
[ENA]
¢þ
>WENV182642914
OJLR01000027
[OJLR] metagenome; surface
23699
23789
+
Ser
GCT
[ENA]
¢þ
>WENV182642915
OJLR01000027
[OJLR] metagenome; surface
24019
24092
+
Arg
ACG
[ENA]
¢þ
>WENV182642909
OJLR01000018
[OJLR] metagenome; surface
25098
25173
+
Thr
CGT
[ENA]
¢þ
>WENV182642908
OJLR01000017
[OJLR] metagenome; surface
25737
25663
-
Ile
GAT
[ENA]
¢þ
>WENV182642912
OJLR01000024
[OJLR] metagenome; surface
25913
25837
-
Pro
CGG
[ENA]
¢þ
>WENV182642894
OJLR01000003
[OJLR] metagenome; surface
26066
25992
-
Ile2
CAT
[ENA]
¢þ
>WENV182642916
OJLR01000027
[OJLR] metagenome; surface
32273
32360
+
Ser
CGA
[ENA]
¢þ
>WENV182642898
OJLR01000005
[OJLR] metagenome; surface
34006
33933
-
Gly
CCC
[ENA]
¢þ
>WENV182642892
OJLR01000002
[OJLR] metagenome; surface
35902
35818
-
Leu
CAA
[ENA]
¢þ
>WENV182642893
OJLR01000003
[OJLR] metagenome; surface
38569
38496
-
Asn
GTT
[ENA]
¢þ
>WENV182642906
OJLR01000014
[OJLR] metagenome; surface
41438
41513
+
Pro
TGG
[ENA]
¢þ
>WENV182642911
OJLR01000019
[OJLR] metagenome; surface
41709
41636
-
Arg
CCT
[ENA]
¢þ
>WENV182642895
OJLR01000004
[OJLR] metagenome; surface
47867
47941
+
Val
TAC
[ENA]
¢þ
>WENV182642910
OJLR01000019
[OJLR] metagenome; surface
49219
49292
+
Ala
CGC
[ENA]
¢þ
>WENV182642903
OJLR01000008
[OJLR] metagenome; surface
57350
57424
+
Pro
GGG
[ENA]
¢þ
>WENV182642897
OJLR01000004
[OJLR] metagenome; surface
57535
57460
-
Glu
CTC
[ENA]
¢þ
>WENV182642896
OJLR01000004
[OJLR] metagenome; surface
57743
57671
-
Gln
CTG
[ENA]
¢þ
>WENV182642904
OJLR01000011
[OJLR] metagenome; surface
61829
61755
-
Lys
TTT
[ENA]
¢þ
>WENV182642902
OJLR01000007
[OJLR] metagenome; surface
65122
65050
-
Val
GAC
[ENA]
¢þ
>WENV182642901
OJLR01000007
[OJLR] metagenome; surface
65194
65123
-
Cys
GCA
[ENA]
¢þ
>WENV182642900
OJLR01000007
[OJLR] metagenome; surface
65295
65222
-
Gly
GCC
[ENA]
¢þ
>WENV182642899
OJLR01000007
[OJLR] metagenome; surface
65674
65748
+
Val
CAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK