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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJMC] metagenome; surface
HIT:
148 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182646682
OJMC01006407
[OJMC] metagenome; surface
8
83
+
Arg
CCT
[ENA]
¢þ
>WENV182646718
OJMC01288420
[OJMC] metagenome; surface
21
94
+
Thr
AGT
[ENA]
¢þ
>WENV182646690
OJMC01031797
[OJMC] metagenome; surface
54
128
+
Val
TAC
[ENA]
¢þ
>WENV182646637
OJMC01000250
[OJMC] metagenome; surface
59
130
+
Gly
TCC
[ENA]
¢þ
>WENV182646657
OJMC01001615
[OJMC] metagenome; surface
63
139
+
Ile
GAT
[ENA]
¢þ
>WENV182646711
OJMC01162809
[OJMC] metagenome; surface
84
155
+
Asp
GTC
[ENA]
¢þ
>WENV182646674
OJMC01002909
[OJMC] metagenome; surface
105
29
-
Ile2
CAT
[ENA]
¢þ
>WENV182646635
OJMC01000183
[OJMC] metagenome; surface
124
48
-
Leu
TAA
[ENA]
¢þ
>WENV182646691
OJMC01031797
[OJMC] metagenome; surface
130
202
+
Asp
GTC
[ENA]
¢þ
>WENV182646706
OJMC01078416
[OJMC] metagenome; surface
133
41
-
Ile
TAT
[ENA]
¢þ
>WENV182646658
OJMC01001656
[OJMC] metagenome; surface
145
221
+
Ile
GAT
[ENA]
¢þ
>WENV182646652
OJMC01000423
[OJMC] metagenome; surface
170
244
+
Val
CAC
[ENA]
¢þ
>WENV182646700
OJMC01035839
[OJMC] metagenome; surface
183
109
-
Asn
GTT
[ENA]
¢þ
>WENV182646717
OJMC01268322
[OJMC] metagenome; surface
190
119
-
Ala
AGC
[ENA]
¢þ
>WENV182646673
OJMC01002909
[OJMC] metagenome; surface
219
143
-
Ile
GAT
[ENA]
¢þ
>WENV182646692
OJMC01031797
[OJMC] metagenome; surface
227
299
+
Lys
TTT
[ENA]
¢þ
>WENV182646714
OJMC01177058
[OJMC] metagenome; surface
256
172
-
Ser
AGA
[ENA]
¢þ
>WENV182646707
OJMC01092264
[OJMC] metagenome; surface
263
192
-
Ala
AGC
[ENA]
¢þ
>WENV182646710
OJMC01142850
[OJMC] metagenome; surface
269
198
-
Ala
CGC
[ENA]
¢þ
>WENV182646672
OJMC01002909
[OJMC] metagenome; surface
300
225
-
Trp
CCA
[ENA]
¢þ
>WENV182646693
OJMC01031797
[OJMC] metagenome; surface
304
387
+
Leu
TAG
[ENA]
¢þ
>WENV182646606
OJMC01000023
[OJMC] metagenome; surface
308
232
-
fMet
CAT
[ENA]
¢þ
>WENV182646681
OJMC01005979
[OJMC] metagenome; surface
335
264
-
Glu
TTC
[ENA]
¢þ
>WENV182646715
OJMC01205557
[OJMC] metagenome; surface
335
408
+
Lys
CTT
[ENA]
¢þ
>WENV182646679
OJMC01003786
[OJMC] metagenome; surface
382
292
-
Ser
GGA
[ENA]
¢þ
>WENV182646713
OJMC01174772
[OJMC] metagenome; surface
387
471
+
Ser
GCT
[ENA]
¢þ
>WENV182646694
OJMC01031797
[OJMC] metagenome; surface
399
471
+
Thr
TGT
[ENA]
¢þ
>WENV182646638
OJMC01000250
[OJMC] metagenome; surface
417
488
+
Glu
CTC
[ENA]
¢þ
>WENV182646627
OJMC01000140
[OJMC] metagenome; surface
422
340
-
Tyr
GTA
[ENA]
¢þ
>WENV182646712
OJMC01167725
[OJMC] metagenome; surface
422
492
+
Met
CAT
[ENA]
¢þ
>WENV182646671
OJMC01002909
[OJMC] metagenome; surface
432
357
-
Phe
GAA
[ENA]
¢þ
>WENV182646703
OJMC01059688
[OJMC] metagenome; surface
479
390
-
Ser
GCT
[ENA]
¢þ
>WENV182646716
OJMC01222531
[OJMC] metagenome; surface
486
413
-
Cys
GCA
[ENA]
¢þ
>WENV182646695
OJMC01031797
[OJMC] metagenome; surface
499
570
+
Gly
GCC
[ENA]
¢þ
>WENV182646678
OJMC01003786
[OJMC] metagenome; surface
508
435
-
Glu
TTC
[ENA]
¢þ
>WENV182646670
OJMC01002909
[OJMC] metagenome; surface
516
440
-
Ile2
CAT
[ENA]
¢þ
>WENV182646594
OJMC01000013
[OJMC] metagenome; surface
520
447
-
Gly
CCC
[ENA]
¢þ
>WENV182646650
OJMC01000341
[OJMC] metagenome; surface
520
595
+
Asp
GTC
[ENA]
¢þ
>WENV182646704
OJMC01066947
[OJMC] metagenome; surface
527
455
-
Arg
TCG
[ENA]
¢þ
>WENV182646709
OJMC01138704
[OJMC] metagenome; surface
543
616
+
Asn
GTT
[ENA]
¢þ
>WENV182646683
OJMC01007785
[OJMC] metagenome; surface
554
483
-
His
GTG
[ENA]
¢þ
>WENV182646705
OJMC01078275
[OJMC] metagenome; surface
555
629
+
Lys
CTT
[ENA]
¢þ
>WENV182646696
OJMC01031797
[OJMC] metagenome; surface
578
663
+
Leu
TAA
[ENA]
¢þ
>WENV182646677
OJMC01003786
[OJMC] metagenome; surface
583
509
-
Asn
GTT
[ENA]
¢þ
>WENV182646669
OJMC01002909
[OJMC] metagenome; surface
615
524
-
Ser
GCT
[ENA]
¢þ
>WENV182646651
OJMC01000341
[OJMC] metagenome; surface
615
688
+
Phe
GAA
[ENA]
¢þ
>WENV182646708
OJMC01111862
[OJMC] metagenome; surface
652
578
-
Gln
TTG
[ENA]
¢þ
>WENV182646688
OJMC01015008
[OJMC] metagenome; surface
662
733
+
Pro
AGG
[ENA]
¢þ
>WENV182646697
OJMC01031797
[OJMC] metagenome; surface
675
748
+
Arg
ACG
[ENA]
¢þ
>WENV182646668
OJMC01002909
[OJMC] metagenome; surface
723
635
-
Ser
TGA
[ENA]
¢þ
>WENV182646701
OJMC01040450
[OJMC] metagenome; surface
728
643
-
Leu
GAG
[ENA]
¢þ
>WENV182646626
OJMC01000120
[OJMC] metagenome; surface
761
838
+
Leu
TAA
[ENA]
¢þ
>WENV182646698
OJMC01031797
[OJMC] metagenome; surface
764
837
+
Pro
TGG
[ENA]
¢þ
>WENV182646667
OJMC01002909
[OJMC] metagenome; surface
804
729
-
Lys
TTT
[ENA]
¢þ
>WENV182646699
OJMC01031797
[OJMC] metagenome; surface
843
917
+
Met
CAT
[ENA]
¢þ
>WENV182646702
OJMC01054758
[OJMC] metagenome; surface
856
783
-
Arg
ACG
[ENA]
¢þ
>WENV182646666
OJMC01002909
[OJMC] metagenome; surface
885
809
-
Gln
TTG
[ENA]
¢þ
>WENV182646654
OJMC01001176
[OJMC] metagenome; surface
912
842
-
Gly
CCC
[ENA]
¢þ
>WENV182646686
OJMC01012261
[OJMC] metagenome; surface
921
846
-
Trp
CCA
[ENA]
¢þ
>WENV182646689
OJMC01019684
[OJMC] metagenome; surface
937
1010
+
Trp
CCA
[ENA]
¢þ
>WENV182646676
OJMC01003259
[OJMC] metagenome; surface
937
1026
+
Ser
CGA
[ENA]
¢þ
>WENV182646653
OJMC01000998
[OJMC] metagenome; surface
968
895
-
Lys
CTT
[ENA]
¢þ
>WENV182646665
OJMC01002909
[OJMC] metagenome; surface
969
893
-
Arg
TCT
[ENA]
¢þ
>WENV182646664
OJMC01002909
[OJMC] metagenome; surface
1048
975
-
Gly
TCC
[ENA]
¢þ
>WENV182646634
OJMC01000180
[OJMC] metagenome; surface
1068
995
-
Gly
CCC
[ENA]
¢þ
>WENV182646685
OJMC01012261
[OJMC] metagenome; surface
1125
1052
-
Met
CAT
[ENA]
¢þ
>WENV182646687
OJMC01014953
[OJMC] metagenome; surface
1146
1072
-
Asn
GTT
[ENA]
¢þ
>WENV182646663
OJMC01002909
[OJMC] metagenome; surface
1158
1073
-
Tyr
GTA
[ENA]
¢þ
>WENV182646684
OJMC01012261
[OJMC] metagenome; surface
1232
1157
-
Thr
GGT
[ENA]
¢þ
>WENV182646662
OJMC01002909
[OJMC] metagenome; surface
1261
1186
-
Thr
TGT
[ENA]
¢þ
>WENV182646661
OJMC01002909
[OJMC] metagenome; surface
1344
1268
-
Asp
GTC
[ENA]
¢þ
>WENV182646655
OJMC01001283
[OJMC] metagenome; surface
1347
1273
-
Pro
TGG
[ENA]
¢þ
>WENV182646675
OJMC01003252
[OJMC] metagenome; surface
1372
1298
-
Asn
GTT
[ENA]
¢þ
>WENV182646680
OJMC01005113
[OJMC] metagenome; surface
1394
1481
+
Leu
CAG
[ENA]
¢þ
>WENV182646660
OJMC01002909
[OJMC] metagenome; surface
1461
1386
-
Val
TAC
[ENA]
¢þ
>WENV182646659
OJMC01002909
[OJMC] metagenome; surface
1543
1469
-
Glu
TTC
[ENA]
¢þ
>WENV182646641
OJMC01000282
[OJMC] metagenome; surface
1766
1840
+
Ala
TGC
[ENA]
¢þ
>WENV182646656
OJMC01001305
[OJMC] metagenome; surface
1935
1864
-
Glu
TTC
[ENA]
¢þ
>WENV182646599
OJMC01000020
[OJMC] metagenome; surface
2183
2256
+
Thr
TGT
[ENA]
¢þ
>WENV182646636
OJMC01000238
[OJMC] metagenome; surface
2231
2304
+
Lys
TTT
[ENA]
¢þ
>WENV182646615
OJMC01000056
[OJMC] metagenome; surface
2746
2819
+
Ala
TGC
[ENA]
¢þ
>WENV182646628
OJMC01000149
[OJMC] metagenome; surface
3067
3139
+
Met
CAT
[ENA]
¢þ
>WENV182646617
OJMC01000060
[OJMC] metagenome; surface
3921
3837
-
Ser
TGA
[ENA]
¢þ
>WENV182646631
OJMC01000175
[OJMC] metagenome; surface
4401
4476
+
Arg
TCT
[ENA]
¢þ
>WENV182646640
OJMC01000250
[OJMC] metagenome; surface
4411
4338
-
Gly
GCC
[ENA]
¢þ
>WENV182646614
OJMC01000050
[OJMC] metagenome; surface
4631
4703
+
Gln
TTG
[ENA]
¢þ
>WENV182646586
OJMC01000009
[OJMC] metagenome; surface
4999
5075
+
Leu
CAA
[ENA]
¢þ
>WENV182646642
OJMC01000282
[OJMC] metagenome; surface
5202
5276
+
Asn
GTT
[ENA]
¢þ
>WENV182646643
OJMC01000282
[OJMC] metagenome; surface
5281
5356
+
fMet
CAT
[ENA]
¢þ
>WENV182646644
OJMC01000282
[OJMC] metagenome; surface
5358
5432
+
Phe
GAA
[ENA]
¢þ
>WENV182646645
OJMC01000282
[OJMC] metagenome; surface
5444
5527
+
Tyr
GTA
[ENA]
¢þ
>WENV182646646
OJMC01000282
[OJMC] metagenome; surface
5538
5611
+
Trp
CCA
[ENA]
¢þ
>WENV182646647
OJMC01000282
[OJMC] metagenome; surface
5614
5687
+
His
GTG
[ENA]
¢þ
>WENV182646624
OJMC01000102
[OJMC] metagenome; surface
5669
5595
-
Arg
CCG
[ENA]
¢þ
>WENV182646590
OJMC01000010
[OJMC] metagenome; surface
5700
5609
-
Ser
GCT
[ENA]
¢þ
>WENV182646648
OJMC01000282
[OJMC] metagenome; surface
5701
5772
+
Gln
TTG
[ENA]
¢þ
>WENV182646649
OJMC01000282
[OJMC] metagenome; surface
5778
5851
+
Cys
GCA
[ENA]
¢þ
>WENV182646639
OJMC01000250
[OJMC] metagenome; surface
6136
6054
-
Leu
CAG
[ENA]
¢þ
>WENV182646619
OJMC01000066
[OJMC] metagenome; surface
6632
6705
+
Asn
GTT
[ENA]
¢þ
>WENV182646633
OJMC01000179
[OJMC] metagenome; surface
6816
6728
-
Ser
GCT
[ENA]
¢þ
>WENV182646629
OJMC01000153
[OJMC] metagenome; surface
7817
7744
-
Val
TAC
[ENA]
¢þ
>WENV182646632
OJMC01000175
[OJMC] metagenome; surface
7824
7899
+
His
GTG
[ENA]
¢þ
>WENV182646591
OJMC01000012
[OJMC] metagenome; surface
7949
8025
+
Pro
CGG
[ENA]
¢þ
>WENV182646630
OJMC01000172
[OJMC] metagenome; surface
8419
8331
-
Ser
CGA
[ENA]
¢þ
>WENV182646597
OJMC01000016
[OJMC] metagenome; surface
8673
8587
-
Leu
GAG
[ENA]
¢þ
>WENV182646625
OJMC01000118
[OJMC] metagenome; surface
8985
9060
+
Ala
GGC
[ENA]
¢þ
>WENV182646622
OJMC01000085
[OJMC] metagenome; surface
9274
9347
+
Gln
TTG
[ENA]
¢þ
>WENV182646623
OJMC01000091
[OJMC] metagenome; surface
10066
9984
-
Leu
TAG
[ENA]
¢þ
>WENV182646616
OJMC01000058
[OJMC] metagenome; surface
11297
11223
-
Ile
GAT
[ENA]
¢þ
>WENV182646579
OJMC01000006
[OJMC] metagenome; surface
12225
12301
+
Leu
TAA
[ENA]
¢þ
>WENV182646618
OJMC01000061
[OJMC] metagenome; surface
12293
12219
-
Ile2
CAT
[ENA]
¢þ
>WENV182646612
OJMC01000044
[OJMC] metagenome; surface
12741
12667
-
Pro
TGG
[ENA]
¢þ
>WENV182646611
OJMC01000044
[OJMC] metagenome; surface
13311
13237
-
Gly
TCC
[ENA]
¢þ
>WENV182646589
OJMC01000010
[OJMC] metagenome; surface
13423
13337
-
Ser
TGA
[ENA]
¢þ
>WENV182646610
OJMC01000039
[OJMC] metagenome; surface
17463
17390
-
Thr
TGT
[ENA]
¢þ
>WENV182646621
OJMC01000078
[OJMC] metagenome; surface
17808
17880
+
Gln
CTG
[ENA]
¢þ
>WENV182646581
OJMC01000008
[OJMC] metagenome; surface
18312
18386
+
Arg
TCT
[ENA]
¢þ
>WENV182646620
OJMC01000067
[OJMC] metagenome; surface
19712
19787
+
Thr
CGT
[ENA]
¢þ
>WENV182646582
OJMC01000008
[OJMC] metagenome; surface
22895
22969
+
His
GTG
[ENA]
¢þ
>WENV182646605
OJMC01000021
[OJMC] metagenome; surface
23772
23846
+
Arg
CCG
[ENA]
¢þ
>WENV182646576
OJMC01000005
[OJMC] metagenome; surface
23903
23975
+
Gln
CTG
[ENA]
¢þ
>WENV182646577
OJMC01000005
[OJMC] metagenome; surface
24010
24083
+
Glu
CTC
[ENA]
¢þ
>WENV182646578
OJMC01000005
[OJMC] metagenome; surface
24691
24764
+
Glu
CTC
[ENA]
¢þ
>WENV182646596
OJMC01000015
[OJMC] metagenome; surface
25902
25829
-
Val
TAC
[ENA]
¢þ
>WENV182646598
OJMC01000019
[OJMC] metagenome; surface
27247
27320
+
Thr
CGT
[ENA]
¢þ
>WENV182646583
OJMC01000008
[OJMC] metagenome; surface
27982
28055
+
Lys
CTT
[ENA]
¢þ
>WENV182646613
OJMC01000045
[OJMC] metagenome; surface
29235
29308
+
Lys
TTT
[ENA]
¢þ
>WENV182646592
OJMC01000012
[OJMC] metagenome; surface
35463
35551
+
Ser
GGA
[ENA]
¢þ
>WENV182646608
OJMC01000028
[OJMC] metagenome; surface
35649
35576
-
Asn
GTT
[ENA]
¢þ
>WENV182646609
OJMC01000031
[OJMC] metagenome; surface
35922
35848
-
Leu
CAA
[ENA]
¢þ
>WENV182646607
OJMC01000028
[OJMC] metagenome; surface
36148
36222
+
Ile2
CAT
[ENA]
¢þ
>WENV182646595
OJMC01000015
[OJMC] metagenome; surface
46712
46638
-
Ile2
CAT
[ENA]
¢þ
>WENV182646600
OJMC01000020
[OJMC] metagenome; surface
55752
55825
+
Lys
TTT
[ENA]
¢þ
>WENV182646601
OJMC01000020
[OJMC] metagenome; surface
57065
57138
+
Glu
TTC
[ENA]
¢þ
>WENV182646602
OJMC01000020
[OJMC] metagenome; surface
57188
57264
+
Asp
GTC
[ENA]
¢þ
>WENV182646603
OJMC01000020
[OJMC] metagenome; surface
57922
57997
+
Asp
GTC
[ENA]
¢þ
>WENV182646604
OJMC01000020
[OJMC] metagenome; surface
58017
58090
+
Phe
GAA
[ENA]
¢þ
>WENV182646585
OJMC01000008
[OJMC] metagenome; surface
58829
58747
-
Leu
TAG
[ENA]
¢þ
>WENV182646580
OJMC01000006
[OJMC] metagenome; surface
64751
64845
+
SeC
TCA
[ENA]
¢þ
>WENV182646588
OJMC01000009
[OJMC] metagenome; surface
67420
67345
-
Gly
GCC
[ENA]
¢þ
>WENV182646587
OJMC01000009
[OJMC] metagenome; surface
67700
67774
+
Val
CAC
[ENA]
¢þ
>WENV182646593
OJMC01000012
[OJMC] metagenome; surface
69274
69184
-
Ser
CGA
[ENA]
¢þ
>WENV182646584
OJMC01000008
[OJMC] metagenome; surface
84516
84443
-
Ala
GGC
[ENA]
¢þ
>WENV182646575
OJMC01000004
[OJMC] metagenome; surface
94148
94221
+
Arg
CCT
[ENA]
¢þ
>WENV182646571
OJMC01000003
[OJMC] metagenome; surface
97914
97990
+
Ile
GAT
[ENA]
¢þ
>WENV182646572
OJMC01000003
[OJMC] metagenome; surface
98000
98073
+
Ala
TGC
[ENA]
¢þ
>WENV182646573
OJMC01000003
[OJMC] metagenome; surface
102949
103022
+
Ala
TGC
[ENA]
¢þ
>WENV182646574
OJMC01000003
[OJMC] metagenome; surface
128163
128248
+
Leu
CAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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