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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJMD] metagenome; surface
HIT:
125 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182646803
OJMD01013598
[OJMD] metagenome; surface
31
105
+
Arg
CCT
[ENA]
¢þ
>WENV182646827
OJMD01053566
[OJMD] metagenome; surface
64
135
+
Gly
GCC
[ENA]
¢þ
>WENV182646833
OJMD01057248
[OJMD] metagenome; surface
65
137
+
Val
GAC
[ENA]
¢þ
>WENV182646774
OJMD01000305
[OJMD] metagenome; surface
72
143
+
Gly
TCC
[ENA]
¢þ
>WENV182646840
OJMD01075857
[OJMD] metagenome; surface
82
-1
-
Leu
CAG
[ENA]
¢þ
>WENV182646793
OJMD01002802
[OJMD] metagenome; surface
82
155
+
Cys
GCA
[ENA]
¢þ
>WENV182646806
OJMD01018357
[OJMD] metagenome; surface
116
192
+
fMet
CAT
[ENA]
¢þ
>WENV182646776
OJMD01000320
[OJMD] metagenome; surface
125
196
+
Gln
TTG
[ENA]
¢þ
>WENV182646837
OJMD01064851
[OJMD] metagenome; surface
129
56
-
Leu
TAA
[ENA]
¢þ
>WENV182646842
OJMD01118112
[OJMD] metagenome; surface
138
65
-
Gly
CCC
[ENA]
¢þ
>WENV182646808
OJMD01021272
[OJMD] metagenome; surface
139
66
-
Gly
CCC
[ENA]
¢þ
>WENV182646819
OJMD01035117
[OJMD] metagenome; surface
140
48
-
Ser
GCT
[ENA]
¢þ
>WENV182646828
OJMD01053566
[OJMD] metagenome; surface
140
225
+
Leu
TAA
[ENA]
¢þ
>WENV182646815
OJMD01028135
[OJMD] metagenome; surface
141
68
-
Pro
TGG
[ENA]
¢þ
>WENV182646796
OJMD01005602
[OJMD] metagenome; surface
142
216
+
Arg
CCT
[ENA]
¢þ
>WENV182646772
OJMD01000294
[OJMD] metagenome; surface
150
75
-
His
GTG
[ENA]
¢þ
>WENV182646794
OJMD01002802
[OJMD] metagenome; surface
168
254
+
Leu
TAA
[ENA]
¢þ
>WENV182646825
OJMD01050416
[OJMD] metagenome; surface
178
102
-
Met
CAT
[ENA]
¢þ
>WENV182646834
OJMD01057248
[OJMD] metagenome; surface
181
256
+
Gly
GCC
[ENA]
¢þ
>WENV182646821
OJMD01038466
[OJMD] metagenome; surface
214
141
-
Asn
GTT
[ENA]
¢þ
>WENV182646801
OJMD01009383
[OJMD] metagenome; surface
227
319
+
Ser
TGA
[ENA]
¢þ
>WENV182646829
OJMD01053566
[OJMD] metagenome; surface
229
304
+
Arg
ACG
[ENA]
¢þ
>WENV182646807
OJMD01018687
[OJMD] metagenome; surface
231
158
-
Gly
CCC
[ENA]
¢þ
>WENV182646826
OJMD01052053
[OJMD] metagenome; surface
233
306
+
Ala
TGC
[ENA]
¢þ
>WENV182646832
OJMD01056332
[OJMD] metagenome; surface
236
309
+
Thr
AGT
[ENA]
¢þ
>WENV182646814
OJMD01028135
[OJMD] metagenome; surface
244
168
-
Arg
ACG
[ENA]
¢þ
>WENV182646800
OJMD01009340
[OJMD] metagenome; surface
276
201
-
Trp
CCA
[ENA]
¢þ
>WENV182646771
OJMD01000294
[OJMD] metagenome; surface
285
209
-
Arg
CCG
[ENA]
¢þ
>WENV182646835
OJMD01057248
[OJMD] metagenome; surface
288
359
+
Cys
GCA
[ENA]
¢þ
>WENV182646838
OJMD01066029
[OJMD] metagenome; surface
294
388
+
SeC
TCA
[ENA]
¢þ
>WENV182646813
OJMD01028135
[OJMD] metagenome; surface
345
257
-
Leu
TAA
[ENA]
¢þ
>WENV182646841
OJMD01076858
[OJMD] metagenome; surface
356
442
+
Ser
TGA
[ENA]
¢þ
>WENV182646791
OJMD01001956
[OJMD] metagenome; surface
367
441
+
Ile
AAT
[ENA]
¢þ
>WENV182646830
OJMD01053566
[OJMD] metagenome; surface
368
443
+
Pro
TGG
[ENA]
¢þ
>WENV182646836
OJMD01062121
[OJMD] metagenome; surface
387
460
+
Thr
CGT
[ENA]
¢þ
>WENV182646839
OJMD01071332
[OJMD] metagenome; surface
404
320
-
Leu
TAG
[ENA]
¢þ
>WENV182646843
OJMD01120280
[OJMD] metagenome; surface
406
333
-
Ala
CGC
[ENA]
¢þ
>WENV182646775
OJMD01000305
[OJMD] metagenome; surface
430
501
+
Glu
CTC
[ENA]
¢þ
>WENV182646812
OJMD01028135
[OJMD] metagenome; surface
431
357
-
Gly
GCC
[ENA]
¢þ
>WENV182646831
OJMD01053566
[OJMD] metagenome; surface
469
544
+
Met
CAT
[ENA]
¢þ
>WENV182646823
OJMD01043313
[OJMD] metagenome; surface
491
416
-
Trp
CCA
[ENA]
¢þ
>WENV182646817
OJMD01032741
[OJMD] metagenome; surface
509
434
-
Ala
GGC
[ENA]
¢þ
>WENV182646769
OJMD01000283
[OJMD] metagenome; surface
509
591
+
Leu
CAG
[ENA]
¢þ
>WENV182646811
OJMD01028135
[OJMD] metagenome; surface
510
438
-
Thr
TGT
[ENA]
¢þ
>WENV182646760
OJMD01000016
[OJMD] metagenome; surface
517
434
-
Leu
CAG
[ENA]
¢þ
>WENV182646824
OJMD01048591
[OJMD] metagenome; surface
539
465
-
Gly
TCC
[ENA]
¢þ
>WENV182646820
OJMD01038235
[OJMD] metagenome; surface
544
634
+
Ser
GGA
[ENA]
¢þ
>WENV182646773
OJMD01000300
[OJMD] metagenome; surface
547
621
+
Asn
GTT
[ENA]
¢þ
>WENV182646818
OJMD01034288
[OJMD] metagenome; surface
556
483
-
Thr
CGT
[ENA]
¢þ
>WENV182646822
OJMD01043313
[OJMD] metagenome; surface
576
500
-
Asp
GTC
[ENA]
¢þ
>WENV182646799
OJMD01007621
[OJMD] metagenome; surface
587
516
-
His
GTG
[ENA]
¢þ
>WENV182646810
OJMD01028135
[OJMD] metagenome; surface
599
516
-
Leu
TAG
[ENA]
¢þ
>WENV182646816
OJMD01029161
[OJMD] metagenome; surface
600
676
+
Val
GAC
[ENA]
¢þ
>WENV182646805
OJMD01014941
[OJMD] metagenome; surface
621
546
-
Phe
GAA
[ENA]
¢þ
>WENV182646778
OJMD01000320
[OJMD] metagenome; surface
643
568
-
Lys
TTT
[ENA]
¢þ
>WENV182646802
OJMD01010800
[OJMD] metagenome; surface
646
718
+
Lys
TTT
[ENA]
¢þ
>WENV182646795
OJMD01004083
[OJMD] metagenome; surface
650
722
+
Met
CAT
[ENA]
¢þ
>WENV182646787
OJMD01001004
[OJMD] metagenome; surface
668
584
-
Leu
CAA
[ENA]
¢þ
>WENV182646809
OJMD01028135
[OJMD] metagenome; surface
679
605
-
Lys
TTT
[ENA]
¢þ
>WENV182646797
OJMD01006922
[OJMD] metagenome; surface
719
627
-
Ser
GCT
[ENA]
¢þ
>WENV182646763
OJMD01000019
[OJMD] metagenome; surface
740
663
-
Leu
TAA
[ENA]
¢þ
>WENV182646790
OJMD01001918
[OJMD] metagenome; surface
741
816
+
Asn
GTT
[ENA]
¢þ
>WENV182646792
OJMD01002438
[OJMD] metagenome; surface
761
835
+
Asn
GTT
[ENA]
¢þ
>WENV182646804
OJMD01013971
[OJMD] metagenome; surface
820
746
-
Ala
AGC
[ENA]
¢þ
>WENV182646798
OJMD01007012
[OJMD] metagenome; surface
867
941
+
Pro
CGG
[ENA]
¢þ
>WENV182646788
OJMD01001124
[OJMD] metagenome; surface
872
796
-
Pro
CGG
[ENA]
¢þ
>WENV182646789
OJMD01001284
[OJMD] metagenome; surface
1325
1250
-
Asn
GTT
[ENA]
¢þ
>WENV182646784
OJMD01000493
[OJMD] metagenome; surface
1329
1413
+
Leu
TAG
[ENA]
¢þ
>WENV182646779
OJMD01000322
[OJMD] metagenome; surface
1488
1574
+
Leu
GAG
[ENA]
¢þ
>WENV182646768
OJMD01000171
[OJMD] metagenome; surface
1493
1569
+
Ile
GAT
[ENA]
¢þ
>WENV182646767
OJMD01000144
[OJMD] metagenome; surface
1583
1657
+
Leu
TAA
[ENA]
¢þ
>WENV182646785
OJMD01000493
[OJMD] metagenome; surface
1601
1676
+
Arg
TCG
[ENA]
¢þ
>WENV182646786
OJMD01000573
[OJMD] metagenome; surface
1782
1852
+
Gly
CCC
[ENA]
¢þ
>WENV182646780
OJMD01000351
[OJMD] metagenome; surface
2252
2178
-
Ala
TGC
[ENA]
¢þ
>WENV182646770
OJMD01000283
[OJMD] metagenome; surface
2267
2340
+
Gly
GCC
[ENA]
¢þ
>WENV182646781
OJMD01000474
[OJMD] metagenome; surface
2283
2358
+
Thr
TGT
[ENA]
¢þ
>WENV182646782
OJMD01000474
[OJMD] metagenome; surface
2367
2451
+
Tyr
GTA
[ENA]
¢þ
>WENV182646783
OJMD01000474
[OJMD] metagenome; surface
2568
2642
+
Gly
TCC
[ENA]
¢þ
>WENV182646777
OJMD01000320
[OJMD] metagenome; surface
2999
3073
+
Ala
TGC
[ENA]
¢þ
>WENV182646764
OJMD01000030
[OJMD] metagenome; surface
3044
3120
+
Ile
GAT
[ENA]
¢þ
>WENV182646765
OJMD01000030
[OJMD] metagenome; surface
3126
3201
+
Ala
TGC
[ENA]
¢þ
>WENV182646762
OJMD01000018
[OJMD] metagenome; surface
3705
3622
-
Leu
TAG
[ENA]
¢þ
>WENV182646766
OJMD01000042
[OJMD] metagenome; surface
4624
4549
-
Glu
TTC
[ENA]
¢þ
>WENV182646735
OJMD01000004
[OJMD] metagenome; surface
6263
6178
-
Ser
GGA
[ENA]
¢þ
>WENV182646743
OJMD01000006
[OJMD] metagenome; surface
6567
6492
-
His
GTG
[ENA]
¢þ
>WENV182646756
OJMD01000015
[OJMD] metagenome; surface
8325
8407
+
Tyr
GTA
[ENA]
¢þ
>WENV182646757
OJMD01000015
[OJMD] metagenome; surface
8608
8681
+
Thr
GGT
[ENA]
¢þ
>WENV182646740
OJMD01000006
[OJMD] metagenome; surface
8634
8709
+
Arg
TCT
[ENA]
¢þ
>WENV182646761
OJMD01000018
[OJMD] metagenome; surface
8678
8604
-
Lys
CTT
[ENA]
¢þ
>WENV182646758
OJMD01000015
[OJMD] metagenome; surface
8746
8820
+
Met
CAT
[ENA]
¢þ
>WENV182646759
OJMD01000015
[OJMD] metagenome; surface
12812
12885
+
Trp
CCA
[ENA]
¢þ
>WENV182646745
OJMD01000009
[OJMD] metagenome; surface
22673
22599
-
Ala
TGC
[ENA]
¢þ
>WENV182646741
OJMD01000006
[OJMD] metagenome; surface
41260
41335
+
Pro
TGG
[ENA]
¢þ
>WENV182646746
OJMD01000010
[OJMD] metagenome; surface
52323
52408
+
Ser
TGA
[ENA]
¢þ
>WENV182646755
OJMD01000012
[OJMD] metagenome; surface
55852
55778
-
Lys
TTT
[ENA]
¢þ
>WENV182646752
OJMD01000012
[OJMD] metagenome; surface
57664
57738
+
Glu
TTC
[ENA]
¢þ
>WENV182646753
OJMD01000012
[OJMD] metagenome; surface
58150
58224
+
Asp
GTC
[ENA]
¢þ
>WENV182646754
OJMD01000012
[OJMD] metagenome; surface
58285
58360
+
Phe
GAA
[ENA]
¢þ
>WENV182646734
OJMD01000004
[OJMD] metagenome; surface
58463
58538
+
Thr
CGT
[ENA]
¢þ
>WENV182646747
OJMD01000010
[OJMD] metagenome; surface
59654
59744
+
Ser
GCT
[ENA]
¢þ
>WENV182646748
OJMD01000010
[OJMD] metagenome; surface
59974
60047
+
Arg
ACG
[ENA]
¢þ
>WENV182646736
OJMD01000005
[OJMD] metagenome; surface
63933
64008
+
Thr
TGT
[ENA]
¢þ
>WENV182646749
OJMD01000010
[OJMD] metagenome; surface
68228
68315
+
Ser
CGA
[ENA]
¢þ
>WENV182646751
OJMD01000011
[OJMD] metagenome; surface
76555
76468
-
Leu
GAG
[ENA]
¢þ
>WENV182646742
OJMD01000006
[OJMD] metagenome; surface
92068
92141
+
Gly
TCC
[ENA]
¢þ
>WENV182646744
OJMD01000007
[OJMD] metagenome; surface
95556
95629
+
Gly
CCC
[ENA]
¢þ
>WENV182646719
OJMD01000001
[OJMD] metagenome; surface
95583
95656
+
Asn
GTT
[ENA]
¢þ
>WENV182646750
OJMD01000010
[OJMD] metagenome; surface
96149
96073
-
Pro
CGG
[ENA]
¢þ
>WENV182646720
OJMD01000001
[OJMD] metagenome; surface
108086
108160
+
Ile2
CAT
[ENA]
¢þ
>WENV182646739
OJMD01000005
[OJMD] metagenome; surface
114952
114879
-
Arg
CCT
[ENA]
¢þ
>WENV182646737
OJMD01000005
[OJMD] metagenome; surface
122476
122549
+
Ala
CGC
[ENA]
¢þ
>WENV182646733
OJMD01000003
[OJMD] metagenome; surface
151784
151858
+
Ile
GAT
[ENA]
¢þ
>WENV182646738
OJMD01000005
[OJMD] metagenome; surface
158506
158585
+
Gln
TTG
[ENA]
¢þ
>WENV182646730
OJMD01000001
[OJMD] metagenome; surface
219754
219682
-
Val
GAC
[ENA]
¢þ
>WENV182646729
OJMD01000001
[OJMD] metagenome; surface
219826
219755
-
Cys
GCA
[ENA]
¢þ
>WENV182646728
OJMD01000001
[OJMD] metagenome; surface
219927
219854
-
Gly
GCC
[ENA]
¢þ
>WENV182646721
OJMD01000001
[OJMD] metagenome; surface
220306
220379
+
Val
CAC
[ENA]
¢þ
>WENV182646732
OJMD01000002
[OJMD] metagenome; surface
234964
234880
-
Leu
CAA
[ENA]
¢þ
>WENV182646731
OJMD01000002
[OJMD] metagenome; surface
308297
308370
+
Ala
GGC
[ENA]
¢þ
>WENV182646722
OJMD01000001
[OJMD] metagenome; surface
371645
371719
+
Pro
GGG
[ENA]
¢þ
>WENV182646723
OJMD01000001
[OJMD] metagenome; surface
417117
417189
+
Arg
CCG
[ENA]
¢þ
>WENV182646724
OJMD01000001
[OJMD] metagenome; surface
438172
438248
+
fMet
CAT
[ENA]
¢þ
>WENV182646725
OJMD01000001
[OJMD] metagenome; surface
530702
530776
+
Val
TAC
[ENA]
¢þ
>WENV182646727
OJMD01000001
[OJMD] metagenome; surface
540186
540111
-
Glu
CTC
[ENA]
¢þ
>WENV182646726
OJMD01000001
[OJMD] metagenome; surface
540394
540322
-
Gln
CTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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