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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJMF] metagenome; surface
HIT:
70 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182648303
OJMF01051728
[OJMF] metagenome; surface
7
81
+
Arg
ACG
[ENA]
¢þ
>WENV182648308
OJMF01129315
[OJMF] metagenome; surface
17
102
+
Leu
TAA
[ENA]
¢þ
>WENV182648309
OJMF01133185
[OJMF] metagenome; surface
57
147
+
Ser
GCT
[ENA]
¢þ
>WENV182648258
OJMF01000478
[OJMF] metagenome; surface
87
158
+
Gly
TCC
[ENA]
¢þ
>WENV182648302
OJMF01037400
[OJMF] metagenome; surface
115
188
+
Gln
CTG
[ENA]
¢þ
>WENV182648281
OJMF01012885
[OJMF] metagenome; surface
125
53
-
Thr
AGT
[ENA]
¢þ
>WENV182648283
OJMF01016518
[OJMF] metagenome; surface
130
203
+
Cys
GCA
[ENA]
¢þ
>WENV182648294
OJMF01033545
[OJMF] metagenome; surface
144
218
+
Asn
GTT
[ENA]
¢þ
>WENV182648282
OJMF01014067
[OJMF] metagenome; surface
196
124
-
Glu
TTC
[ENA]
¢þ
>WENV182648295
OJMF01033545
[OJMF] metagenome; surface
219
292
+
Glu
TTC
[ENA]
¢þ
>WENV182648304
OJMF01053888
[OJMF] metagenome; surface
229
139
-
Ser
GGA
[ENA]
¢þ
>WENV182648262
OJMF01001814
[OJMF] metagenome; surface
232
314
+
Leu
CAG
[ENA]
¢þ
>WENV182648310
OJMF01152360
[OJMF] metagenome; surface
266
337
+
Ala
TGC
[ENA]
¢þ
>WENV182648296
OJMF01033545
[OJMF] metagenome; surface
298
373
+
Val
TAC
[ENA]
¢þ
>WENV182648269
OJMF01005618
[OJMF] metagenome; surface
334
260
-
Met
CAT
[ENA]
¢þ
>WENV182648285
OJMF01020191
[OJMF] metagenome; surface
334
409
+
Asn
GTT
[ENA]
¢þ
>WENV182648307
OJMF01126502
[OJMF] metagenome; surface
346
416
+
Gln
TTG
[ENA]
¢þ
>WENV182648305
OJMF01063460
[OJMF] metagenome; surface
346
422
+
Asp
GTC
[ENA]
¢þ
>WENV182648311
OJMF01171258
[OJMF] metagenome; surface
354
438
+
Tyr
GTA
[ENA]
¢þ
>WENV182648297
OJMF01033545
[OJMF] metagenome; surface
380
455
+
Thr
TGT
[ENA]
¢þ
>WENV182648279
OJMF01012794
[OJMF] metagenome; surface
388
460
+
Val
CAC
[ENA]
¢þ
>WENV182648264
OJMF01002035
[OJMF] metagenome; surface
411
482
+
Glu
TTC
[ENA]
¢þ
>WENV182648292
OJMF01028264
[OJMF] metagenome; surface
435
360
-
Ala
TGC
[ENA]
¢þ
>WENV182648259
OJMF01000478
[OJMF] metagenome; surface
445
516
+
Glu
CTC
[ENA]
¢þ
>WENV182648298
OJMF01033545
[OJMF] metagenome; surface
461
535
+
Lys
TTT
[ENA]
¢þ
>WENV182648278
OJMF01012264
[OJMF] metagenome; surface
464
394
-
Gly
CCC
[ENA]
¢þ
>WENV182648293
OJMF01029906
[OJMF] metagenome; surface
473
548
+
Lys
TTT
[ENA]
¢þ
>WENV182648306
OJMF01079573
[OJMF] metagenome; surface
531
460
-
Asp
GTC
[ENA]
¢þ
>WENV182648299
OJMF01033545
[OJMF] metagenome; surface
553
627
+
Gly
GCC
[ENA]
¢þ
>WENV182648291
OJMF01028264
[OJMF] metagenome; surface
566
490
-
Ile
GAT
[ENA]
¢þ
>WENV182648257
OJMF01000262
[OJMF] metagenome; surface
591
520
-
Met
CAT
[ENA]
¢þ
>WENV182648275
OJMF01010080
[OJMF] metagenome; surface
597
670
+
Ile
AAT
[ENA]
¢þ
>WENV182648300
OJMF01033545
[OJMF] metagenome; surface
639
727
+
Leu
TAA
[ENA]
¢þ
>WENV182648289
OJMF01026458
[OJMF] metagenome; surface
654
729
+
Thr
AGT
[ENA]
¢þ
>WENV182648265
OJMF01002230
[OJMF] metagenome; surface
668
750
+
Val
TAC
[ENA]
¢þ
>WENV182648274
OJMF01008658
[OJMF] metagenome; surface
675
605
-
Gly
GCC
[ENA]
¢þ
>WENV182648272
OJMF01007544
[OJMF] metagenome; surface
708
633
-
Ala
TGC
[ENA]
¢þ
>WENV182648270
OJMF01006921
[OJMF] metagenome; surface
714
787
+
Gly
CCC
[ENA]
¢þ
>WENV182648288
OJMF01023639
[OJMF] metagenome; surface
737
662
-
Ala
TGC
[ENA]
¢þ
>WENV182648286
OJMF01022540
[OJMF] metagenome; surface
737
663
-
Asn
GTT
[ENA]
¢þ
>WENV182648301
OJMF01033545
[OJMF] metagenome; surface
740
814
+
Arg
ACG
[ENA]
¢þ
>WENV182648276
OJMF01010649
[OJMF] metagenome; surface
747
818
+
His
GTG
[ENA]
¢þ
>WENV182648290
OJMF01027819
[OJMF] metagenome; surface
775
704
-
Pro
AGG
[ENA]
¢þ
>WENV182648277
OJMF01011183
[OJMF] metagenome; surface
816
902
+
Leu
TAA
[ENA]
¢þ
>WENV182648287
OJMF01023639
[OJMF] metagenome; surface
825
749
-
Ile
GAT
[ENA]
¢þ
>WENV182648271
OJMF01007544
[OJMF] metagenome; surface
827
751
-
Ile
GAT
[ENA]
¢þ
>WENV182648284
OJMF01018690
[OJMF] metagenome; surface
852
924
+
Thr
AGT
[ENA]
¢þ
>WENV182648280
OJMF01012794
[OJMF] metagenome; surface
863
782
-
Leu
AAG
[ENA]
¢þ
>WENV182648267
OJMF01004823
[OJMF] metagenome; surface
917
845
-
Met
CAT
[ENA]
¢þ
>WENV182648260
OJMF01001164
[OJMF] metagenome; surface
1103
1174
+
Ala
AGC
[ENA]
¢þ
>WENV182648273
OJMF01007764
[OJMF] metagenome; surface
1165
1238
+
Arg
CCG
[ENA]
¢þ
>WENV182648254
OJMF01000002
[OJMF] metagenome; surface
1228
1305
+
Leu
TAA
[ENA]
¢þ
>WENV182648268
OJMF01005567
[OJMF] metagenome; surface
1238
1323
+
Gly
TCC
[ENA]
¢þ
>WENV182648242
OJMF01000001
[OJMF] metagenome; surface
1241
1314
+
Glu
TTC
[ENA]
¢þ
>WENV182648266
OJMF01003253
[OJMF] metagenome; surface
1274
1200
-
Val
AAC
[ENA]
¢þ
>WENV182648243
OJMF01000001
[OJMF] metagenome; surface
1315
1386
+
Val
TAC
[ENA]
¢þ
>WENV182648263
OJMF01001814
[OJMF] metagenome; surface
1994
2067
+
Gly
GCC
[ENA]
¢þ
>WENV182648261
OJMF01001491
[OJMF] metagenome; surface
2565
2494
-
Trp
CCA
[ENA]
¢þ
>WENV182648255
OJMF01000184
[OJMF] metagenome; surface
2811
2881
+
Glu
CTC
[ENA]
¢þ
>WENV182648256
OJMF01000184
[OJMF] metagenome; surface
3445
3375
-
Glu
TTC
[ENA]
¢þ
>WENV182648244
OJMF01000001
[OJMF] metagenome; surface
4039
4109
+
Met
CAT
[ENA]
¢þ
>WENV182648245
OJMF01000001
[OJMF] metagenome; surface
4112
4185
+
Ile2
CAT
[ENA]
¢þ
>WENV182648246
OJMF01000001
[OJMF] metagenome; surface
4185
4265
+
Sup
TTA
[ENA]
¢þ
>WENV182648247
OJMF01000001
[OJMF] metagenome; surface
4268
4341
+
Ala
TGC
[ENA]
¢þ
>WENV182648248
OJMF01000001
[OJMF] metagenome; surface
4349
4421
+
Phe
GAA
[ENA]
¢þ
>WENV182648249
OJMF01000001
[OJMF] metagenome; surface
4861
4932
+
His
GTG
[ENA]
¢þ
>WENV182648250
OJMF01000001
[OJMF] metagenome; surface
6768
6840
+
Arg
TCT
[ENA]
¢þ
>WENV182648251
OJMF01000001
[OJMF] metagenome; surface
6843
6915
+
Asn
GTT
[ENA]
¢þ
>WENV182648252
OJMF01000001
[OJMF] metagenome; surface
21284
21370
+
Tyr
GTA
[ENA]
¢þ
>WENV182648253
OJMF01000001
[OJMF] metagenome; surface
23117
23190
+
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK