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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OJMW] gut metagenome; gut
HIT:
7 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182665001
OJMW01000363
[OJMW] gut metagenome; gut
1
77
+
Met
CAT
[ENA]
¢þ
>WENV182665003
OJMW01000767
[OJMW] gut metagenome; gut
144
216
+
Thr
GGT
[ENA]
¢þ
>WENV182665006
OJMW01002632
[OJMW] gut metagenome; gut
348
273
-
Thr
GGT
[ENA]
¢þ
>WENV182665005
OJMW01002632
[OJMW] gut metagenome; gut
429
355
-
Gly
TCC
[ENA]
¢þ
>WENV182665004
OJMW01001663
[OJMW] gut metagenome; gut
726
650
-
Ala
TGC
[ENA]
¢þ
>WENV182665002
OJMW01000621
[OJMW] gut metagenome; gut
888
815
-
Trp
CCA
[ENA]
¢þ
>WENV182665000
OJMW01000091
[OJMW] gut metagenome; gut
2566
2478
-
Ser
GGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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