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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[OJMY] gut metagenome; gut
HIT:
6 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182665019
OJMY01000410
[OJMY] gut metagenome; gut
91
165
+
Gly
TCC
[ENA]
¢þ
>WENV182665020
OJMY01000410
[OJMY] gut metagenome; gut
172
247
+
Thr
GGT
[ENA]
¢þ
>WENV182665023
OJMY01001465
[OJMY] gut metagenome; gut
333
261
-
Thr
GGT
[ENA]
¢þ
>WENV182665024
OJMY01002557
[OJMY] gut metagenome; gut
393
466
+
Trp
CCA
[ENA]
¢þ
>WENV182665022
OJMY01001465
[OJMY] gut metagenome; gut
529
446
-
Tyr
GTA
[ENA]
¢þ
>WENV182665021
OJMY01001465
[OJMY] gut metagenome; gut
762
686
-
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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