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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJSR] human gut metagenome; human gut
HIT:
104 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182796860
OJSR01000366
[OJSR] human gut metagenome; human gut
44
115
+
Gly
GCC
[ENA]
¢þ
>WENV182796841
OJSR01000159
[OJSR] human gut metagenome; human gut
99
174
+
Val
TAC
[ENA]
¢þ
>WENV182796797
OJSR01000017
[OJSR] human gut metagenome; human gut
105
181
+
Asp
GTC
[ENA]
¢þ
>WENV182796850
OJSR01000229
[OJSR] human gut metagenome; human gut
111
193
+
Leu
CAG
[ENA]
¢þ
>WENV182796861
OJSR01000366
[OJSR] human gut metagenome; human gut
131
216
+
Leu
TAA
[ENA]
¢þ
>WENV182796866
OJSR01000425
[OJSR] human gut metagenome; human gut
132
58
-
Gly
TCC
[ENA]
¢þ
>WENV182796883
OJSR01000434
[OJSR] human gut metagenome; human gut
138
65
-
Glu
TTC
[ENA]
¢þ
>WENV182796859
OJSR01000330
[OJSR] human gut metagenome; human gut
140
67
-
Glu
TTC
[ENA]
¢þ
>WENV182796845
OJSR01000197
[OJSR] human gut metagenome; human gut
166
95
-
Arg
CCT
[ENA]
¢þ
>WENV182796842
OJSR01000159
[OJSR] human gut metagenome; human gut
178
253
+
Lys
TTT
[ENA]
¢þ
>WENV182796882
OJSR01000434
[OJSR] human gut metagenome; human gut
226
151
-
Ile
GAT
[ENA]
¢þ
>WENV182796858
OJSR01000330
[OJSR] human gut metagenome; human gut
228
153
-
Ile
GAT
[ENA]
¢þ
>WENV182796862
OJSR01000366
[OJSR] human gut metagenome; human gut
231
304
+
Arg
ACG
[ENA]
¢þ
>WENV182796889
OJSR01001327
[OJSR] human gut metagenome; human gut
239
167
-
Thr
GGT
[ENA]
¢þ
>WENV182796888
OJSR01001178
[OJSR] human gut metagenome; human gut
277
202
-
Arg
TCT
[ENA]
¢þ
>WENV182796857
OJSR01000330
[OJSR] human gut metagenome; human gut
307
237
-
Gly
TCC
[ENA]
¢þ
>WENV182796892
OJSR01001949
[OJSR] human gut metagenome; human gut
307
378
+
Trp
CCA
[ENA]
¢þ
>WENV182796863
OJSR01000366
[OJSR] human gut metagenome; human gut
316
389
+
Pro
TGG
[ENA]
¢þ
>WENV182796865
OJSR01000425
[OJSR] human gut metagenome; human gut
332
248
-
Tyr
GTA
[ENA]
¢þ
>WENV182796881
OJSR01000434
[OJSR] human gut metagenome; human gut
332
260
-
Gly
TCC
[ENA]
¢þ
>WENV182796791
OJSR01000009
[OJSR] human gut metagenome; human gut
385
298
-
Ser
GGA
[ENA]
¢þ
>WENV182796856
OJSR01000330
[OJSR] human gut metagenome; human gut
395
318
-
Phe
GAA
[ENA]
¢þ
>WENV182796880
OJSR01000434
[OJSR] human gut metagenome; human gut
417
345
-
Phe
GAA
[ENA]
¢þ
>WENV182796864
OJSR01000425
[OJSR] human gut metagenome; human gut
418
343
-
Thr
TGT
[ENA]
¢þ
>WENV182796855
OJSR01000330
[OJSR] human gut metagenome; human gut
474
399
-
Asp
GTC
[ENA]
¢þ
>WENV182796879
OJSR01000434
[OJSR] human gut metagenome; human gut
494
421
-
fMet
CAT
[ENA]
¢þ
>WENV182796891
OJSR01001806
[OJSR] human gut metagenome; human gut
545
620
+
Asn
GTT
[ENA]
¢þ
>WENV182796844
OJSR01000186
[OJSR] human gut metagenome; human gut
589
514
-
Lys
CTT
[ENA]
¢þ
>WENV182796854
OJSR01000330
[OJSR] human gut metagenome; human gut
596
521
-
fMet
CAT
[ENA]
¢þ
>WENV182796878
OJSR01000434
[OJSR] human gut metagenome; human gut
603
514
-
Ser
TGA
[ENA]
¢þ
>WENV182796877
OJSR01000434
[OJSR] human gut metagenome; human gut
694
619
-
Ile2
CAT
[ENA]
¢þ
>WENV182796890
OJSR01001581
[OJSR] human gut metagenome; human gut
706
632
-
Ala
TGC
[ENA]
¢þ
>WENV182796851
OJSR01000272
[OJSR] human gut metagenome; human gut
707
779
+
Thr
GGT
[ENA]
¢þ
>WENV182796853
OJSR01000330
[OJSR] human gut metagenome; human gut
718
629
-
Ser
TGA
[ENA]
¢þ
>WENV182796876
OJSR01000434
[OJSR] human gut metagenome; human gut
781
706
-
Met
CAT
[ENA]
¢þ
>WENV182796852
OJSR01000330
[OJSR] human gut metagenome; human gut
825
752
-
Ile2
CAT
[ENA]
¢þ
>WENV182796875
OJSR01000434
[OJSR] human gut metagenome; human gut
860
787
-
Pro
TGG
[ENA]
¢þ
>WENV182796874
OJSR01000434
[OJSR] human gut metagenome; human gut
962
889
-
Arg
ACG
[ENA]
¢þ
>WENV182796873
OJSR01000434
[OJSR] human gut metagenome; human gut
1061
976
-
Leu
TAA
[ENA]
¢þ
>WENV182796872
OJSR01000434
[OJSR] human gut metagenome; human gut
1138
1067
-
Gly
GCC
[ENA]
¢þ
>WENV182796871
OJSR01000434
[OJSR] human gut metagenome; human gut
1231
1159
-
Thr
TGT
[ENA]
¢þ
>WENV182796832
OJSR01000101
[OJSR] human gut metagenome; human gut
1240
1155
-
Leu
AAG
[ENA]
¢þ
>WENV182796870
OJSR01000434
[OJSR] human gut metagenome; human gut
1323
1242
-
Leu
TAG
[ENA]
¢þ
>WENV182796869
OJSR01000434
[OJSR] human gut metagenome; human gut
1401
1329
-
Lys
TTT
[ENA]
¢þ
>WENV182796868
OJSR01000434
[OJSR] human gut metagenome; human gut
1501
1429
-
Asp
GTC
[ENA]
¢þ
>WENV182796867
OJSR01000434
[OJSR] human gut metagenome; human gut
1577
1503
-
Val
TAC
[ENA]
¢þ
>WENV182796813
OJSR01000040
[OJSR] human gut metagenome; human gut
1624
1535
-
Ser
CGA
[ENA]
¢þ
>WENV182796887
OJSR01000857
[OJSR] human gut metagenome; human gut
1637
1548
-
Ser
GGA
[ENA]
¢þ
>WENV182796886
OJSR01000806
[OJSR] human gut metagenome; human gut
1989
2062
+
Arg
CCG
[ENA]
¢þ
>WENV182796884
OJSR01000450
[OJSR] human gut metagenome; human gut
2593
2520
-
Arg
TCT
[ENA]
¢þ
>WENV182796809
OJSR01000040
[OJSR] human gut metagenome; human gut
2616
2691
+
Asn
GTT
[ENA]
¢þ
>WENV182796823
OJSR01000082
[OJSR] human gut metagenome; human gut
2766
2840
+
Arg
CCT
[ENA]
¢þ
>WENV182796843
OJSR01000162
[OJSR] human gut metagenome; human gut
2821
2893
+
Thr
CGT
[ENA]
¢þ
>WENV182796885
OJSR01000479
[OJSR] human gut metagenome; human gut
2970
3043
+
Lys
CTT
[ENA]
¢þ
>WENV182796814
OJSR01000067
[OJSR] human gut metagenome; human gut
3322
3238
-
Leu
CAA
[ENA]
¢þ
>WENV182796808
OJSR01000035
[OJSR] human gut metagenome; human gut
3506
3432
-
Gln
CTG
[ENA]
¢þ
>WENV182796807
OJSR01000035
[OJSR] human gut metagenome; human gut
3656
3582
-
Gln
CTG
[ENA]
¢þ
>WENV182796806
OJSR01000035
[OJSR] human gut metagenome; human gut
3780
3704
-
Met
CAT
[ENA]
¢þ
>WENV182796805
OJSR01000035
[OJSR] human gut metagenome; human gut
3878
3804
-
Gln
TTG
[ENA]
¢þ
>WENV182796804
OJSR01000035
[OJSR] human gut metagenome; human gut
3989
3915
-
Gln
TTG
[ENA]
¢þ
>WENV182796803
OJSR01000035
[OJSR] human gut metagenome; human gut
4097
4013
-
Leu
TAG
[ENA]
¢þ
>WENV182796802
OJSR01000035
[OJSR] human gut metagenome; human gut
4182
4106
-
Met
CAT
[ENA]
¢þ
>WENV182796833
OJSR01000106
[OJSR] human gut metagenome; human gut
4235
4307
+
Cys
GCA
[ENA]
¢þ
>WENV182796790
OJSR01000009
[OJSR] human gut metagenome; human gut
5261
5174
-
Ser
GGA
[ENA]
¢þ
>WENV182796839
OJSR01000136
[OJSR] human gut metagenome; human gut
5364
5288
-
Pro
TGG
[ENA]
¢þ
>WENV182796846
OJSR01000199
[OJSR] human gut metagenome; human gut
5386
5458
+
Trp
CCA
[ENA]
¢þ
>WENV182796847
OJSR01000199
[OJSR] human gut metagenome; human gut
5469
5543
+
His
GTG
[ENA]
¢þ
>WENV182796838
OJSR01000136
[OJSR] human gut metagenome; human gut
5493
5407
-
Leu
CAG
[ENA]
¢þ
>WENV182796848
OJSR01000199
[OJSR] human gut metagenome; human gut
5555
5628
+
Gln
TTG
[ENA]
¢þ
>WENV182796837
OJSR01000136
[OJSR] human gut metagenome; human gut
5592
5517
-
His
GTG
[ENA]
¢þ
>WENV182796836
OJSR01000136
[OJSR] human gut metagenome; human gut
5724
5648
-
Arg
CCG
[ENA]
¢þ
>WENV182796840
OJSR01000155
[OJSR] human gut metagenome; human gut
5751
5664
-
Ser
TGA
[ENA]
¢þ
>WENV182796831
OJSR01000099
[OJSR] human gut metagenome; human gut
6816
6891
+
Thr
CGT
[ENA]
¢þ
>WENV182796795
OJSR01000015
[OJSR] human gut metagenome; human gut
6861
6945
+
Tyr
GTA
[ENA]
¢þ
>WENV182796849
OJSR01000199
[OJSR] human gut metagenome; human gut
7081
7152
+
Arg
CCG
[ENA]
¢þ
>WENV182796796
OJSR01000015
[OJSR] human gut metagenome; human gut
7161
7245
+
Tyr
GTA
[ENA]
¢þ
>WENV182796810
OJSR01000040
[OJSR] human gut metagenome; human gut
7856
7931
+
Asn
GTT
[ENA]
¢þ
>WENV182796798
OJSR01000017
[OJSR] human gut metagenome; human gut
9558
9634
+
Asp
GTC
[ENA]
¢þ
>WENV182796827
OJSR01000090
[OJSR] human gut metagenome; human gut
10511
10586
+
Gly
GCC
[ENA]
¢þ
>WENV182796828
OJSR01000090
[OJSR] human gut metagenome; human gut
10627
10700
+
Cys
GCA
[ENA]
¢þ
>WENV182796829
OJSR01000090
[OJSR] human gut metagenome; human gut
10714
10800
+
Leu
TAA
[ENA]
¢þ
>WENV182796834
OJSR01000119
[OJSR] human gut metagenome; human gut
14261
14336
+
Phe
GAA
[ENA]
¢þ
>WENV182796835
OJSR01000120
[OJSR] human gut metagenome; human gut
15071
14985
-
Leu
CAG
[ENA]
¢þ
>WENV182796826
OJSR01000084
[OJSR] human gut metagenome; human gut
15990
15896
-
SeC
TCA
[ENA]
¢þ
>WENV182796812
OJSR01000040
[OJSR] human gut metagenome; human gut
16854
16779
-
Asn
GTT
[ENA]
¢þ
>WENV182796799
OJSR01000019
[OJSR] human gut metagenome; human gut
17910
17983
+
Gly
CCC
[ENA]
¢þ
>WENV182796811
OJSR01000040
[OJSR] human gut metagenome; human gut
18612
18687
+
Asn
GTT
[ENA]
¢þ
>WENV182796817
OJSR01000074
[OJSR] human gut metagenome; human gut
19536
19628
+
Ser
GCT
[ENA]
¢þ
>WENV182796818
OJSR01000074
[OJSR] human gut metagenome; human gut
19633
19709
+
Arg
ACG
[ENA]
¢þ
>WENV182796819
OJSR01000074
[OJSR] human gut metagenome; human gut
19860
19936
+
Arg
ACG
[ENA]
¢þ
>WENV182796820
OJSR01000074
[OJSR] human gut metagenome; human gut
19998
20074
+
Arg
ACG
[ENA]
¢þ
>WENV182796821
OJSR01000074
[OJSR] human gut metagenome; human gut
20303
20379
+
Arg
ACG
[ENA]
¢þ
>WENV182796815
OJSR01000069
[OJSR] human gut metagenome; human gut
21078
21164
+
Leu
GAG
[ENA]
¢þ
>WENV182796830
OJSR01000098
[OJSR] human gut metagenome; human gut
21143
21219
+
Pro
CGG
[ENA]
¢þ
>WENV182796792
OJSR01000011
[OJSR] human gut metagenome; human gut
22718
22642
-
Pro
GGG
[ENA]
¢þ
>WENV182796825
OJSR01000082
[OJSR] human gut metagenome; human gut
23238
23163
-
Ala
GGC
[ENA]
¢þ
>WENV182796824
OJSR01000082
[OJSR] human gut metagenome; human gut
23355
23280
-
Ala
GGC
[ENA]
¢þ
>WENV182796793
OJSR01000013
[OJSR] human gut metagenome; human gut
23655
23731
+
Val
GAC
[ENA]
¢þ
>WENV182796794
OJSR01000013
[OJSR] human gut metagenome; human gut
23736
23812
+
Val
GAC
[ENA]
¢þ
>WENV182796816
OJSR01000069
[OJSR] human gut metagenome; human gut
25095
25171
+
fMet
CAT
[ENA]
¢þ
>WENV182796822
OJSR01000078
[OJSR] human gut metagenome; human gut
27247
27172
-
Trp
CCA
[ENA]
¢þ
>WENV182796800
OJSR01000020
[OJSR] human gut metagenome; human gut
28201
28125
-
Arg
TCT
[ENA]
¢þ
>WENV182796801
OJSR01000024
[OJSR] human gut metagenome; human gut
43364
43439
+
Phe
GAA
[ENA]
¢þ
>WENV182796789
OJSR01000004
[OJSR] human gut metagenome; human gut
58544
58469
-
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK